Rw6G040150

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000358
Physical Location & Seq
Reverse (-)
64004339 .. 64005510
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040150.1

Sequence Viewer

Length: 1062 bp
ATGATAGGAGACGACGAACTCGGCCTAGTCCTGAGCCGGGTAACCGAGCCAGCTGATAGAAAATCGGCCTCTCAGGTCTGCAAGCGATGGGGGGTAACGGAGGGTCTGAGCCGATCGTCACTTCGAGTTGTCAACATGGATCATCTTCCTCGATTACTAGCTAGGTATCCAAACTTAGCCACATTCGAAACACCCAAGCGAATGAGCAATGCCGATCTCGCATTGGTGGCCCAATCATGCCCCAAACTGGAGGCCTTCAAACTTGGTCCGACTATTGCGGAAATTGAAATGCAAGACATCCGCGCACTGGTACGATATGAATTAGAATTAGCGATCTCTGTTGATGAAGTAAGGGAGATATTACGGGTGGTTCATCAAGTTGGGGACCAAGGTTTGTGCGCTTTGGCAAATGGGTGGTTCCCAATCATGGCCATGATCACTTCAGCAGCACATCACTTGACTCATTTGGATTTGGAACATTGTTCTTCGGTTTCGGACCAAGCCCTTGAAGCAATTGGGTCCTCTGCTTGTCCCATTCGCGTTTTGAATTTGAAAGGTTGCTCCATTACTGGAGCCGGATTGAGATTTTTGGCAAATGGGTGTTGCTCAAAAACCATCGAGCAATTGAACCTTGCGTACTGCCCTGGAATCACTAATGACGGGGTCTTGCTTTTGTGCATGATGCGTGTCTTGGAGGAGCTGGATTTGTCGTTCTGTAGCGAGCTAACTGATGTTGGAGGACAGGCAATCTCTGCAATTCAAACCCTCAAGAAGTTGAACTTGGCCTGTGTATTCTCCCTGACAGAAAAAACTGTTGTAGCTCTTGCTAAGAATTGCATAAACTTGGAGATGCTTAATCTACGTGGTGGTTTAGGGGTCACTACAGCTGCTATTGATGCATTTTTGGGTCACAAATGCTTGCAATCCCTTAATCTAATTGAAAGCCTAGCGCTTCAATGCCCTTCATTCAAGTCAATTGTGGTGAATGAAAAATGGAGAGATAGGCTGTTGCAGGAAATGCAAGAGAGTACTGTTAGCAGATTCCTGCAATTCAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

353

Amino Acids

38.63

Weight (kDa)

6.02

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 4 - 39 6e-08 F-box
DUF7885 PF25372 146 - 314 2.4e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 303, 540
AciI CCGC 2 cut(s) 278, 301
AclWI GGATC 1 cut(s) 147
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 3 cut(s) 312, 638, 1030
AfeI AGCGCT 1 cut(s) 951
AfiI CCNNNNNNNGG 4 cut(s) 37, 247, 307, 427
AjnI CCWGG 1 cut(s) 643
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AloI GAACNNNNNNTCC 2 cut(s) 695, 727
AluBI AGCT 6 cut(s) 53, 161, 700, 724, 821, 887
AluI AGCT 6 cut(s) 53, 161, 700, 724, 821, 887
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 1 cut(s) 147
Aor51HI AGCGCT 1 cut(s) 951
AoxI GGCC 6 cut(s) 22, 66, 228, 252, 429, 783
ApeKI GCWGC 2 cut(s) 446, 887
ApoI RAATTY 1 cut(s) 547
AspLEI GCGC 3 cut(s) 305, 401, 952
AspS9I GGNCC 5 cut(s) 229, 266, 385, 496, 519
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 994
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 4 cut(s) 266, 385, 496, 519
BalI TGGCCA 1 cut(s) 431
BbvI GCAGC 2 cut(s) 458, 874
BccI CCATC 2 cut(s) 81, 623
BciT130I CCWGG 1 cut(s) 645
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 4 cut(s) 26, 158, 162, 947
BfmI CTRYAG 2 cut(s) 715, 882
BfoI RGCGCY 1 cut(s) 953
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 2 cut(s) 447, 888
BlsI GCNGC 2 cut(s) 448, 889
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 2 cut(s) 38, 645
Bme18I GGWCC 4 cut(s) 266, 385, 496, 519
BmgT120I GGNCC 5 cut(s) 229, 266, 385, 496, 519
BmiI GGNNCC 4 cut(s) 386, 419, 520, 574
BmrFI CCNGG 2 cut(s) 38, 645
BmsI GCATC 3 cut(s) 672, 840, 886
BpmI CTGGAG 2 cut(s) 269, 591
Bpu10I CCTNAGC 1 cut(s) 32
Bpu14I TTCGAA 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 752
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 863
BsaJI CCNNGG 2 cut(s) 388, 643
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 247, 307, 427
Bse1I ACTGG 3 cut(s) 252, 312, 574
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 388, 643
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 4 cut(s) 37, 247, 307, 427
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 3 cut(s) 23, 86, 98
BseNI ACTGG 3 cut(s) 252, 312, 574
BseRI GAGGAG 1 cut(s) 710
BseXI GCAGC 2 cut(s) 458, 874
Bsh1236I CGCG 2 cut(s) 303, 540
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 6 cut(s) 24, 68, 230, 254, 431, 785
BsiEI CGRYCG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 37, 576
BslFI GGGAC 2 cut(s) 398, 516
BslI CCNNNNNNNGG 4 cut(s) 37, 247, 307, 427
BsmAI GTCTC 1 cut(s) 3
BsmBI CGTCTC 1 cut(s) 3
BsmFI GGGAC 2 cut(s) 398, 516
BsnI GGCC 6 cut(s) 24, 68, 230, 254, 431, 785
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 5 cut(s) 113, 139, 214, 333, 435
BspACI CCGC 2 cut(s) 278, 301
BspANI GGCC 6 cut(s) 24, 68, 230, 254, 431, 785
BspCNI CTCAG 3 cut(s) 24, 85, 99
BspFNI CGCG 2 cut(s) 303, 540
BspLI GGNNCC 4 cut(s) 386, 419, 520, 574
BspPI GGATC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 3 cut(s) 252, 312, 574
BssECI CCNNGG 2 cut(s) 388, 643
BssMI GATC 5 cut(s) 113, 139, 214, 333, 435
BssT1I CCWWGG 1 cut(s) 388
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 2 cut(s) 814, 1033
BstAPI GCANNNNNTGC 2 cut(s) 752, 1018
BstBAI YACGTR 1 cut(s) 863
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 4 cut(s) 51, 83, 722, 920
BstDEI CTNAG 5 cut(s) 32, 72, 107, 175, 828
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 2 cut(s) 303, 540
BstH2I RGCGCY 1 cut(s) 953
BstHHI GCGC 3 cut(s) 305, 401, 952
BstKTI GATC 5 cut(s) 116, 142, 217, 336, 438
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 5 cut(s) 113, 139, 214, 333, 435
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 6 cut(s) 218, 227, 509, 752, 896, 1018
BstNI CCWGG 1 cut(s) 645
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 36, 643
BstSFI CTRYAG 2 cut(s) 715, 882
BstUI CGCG 2 cut(s) 303, 540
BstV1I GCAGC 2 cut(s) 458, 874
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 6 cut(s) 24, 68, 230, 254, 431, 785
BtgZI GCGATG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 4 cut(s) 51, 83, 722, 920
CfoI GCGC 3 cut(s) 305, 401, 952
Cfr13I GGNCC 5 cut(s) 229, 266, 385, 496, 519
Csp6I GTAC 3 cut(s) 311, 637, 1029
CviAII CATG 5 cut(s) 136, 237, 427, 433, 679
CviQI GTAC 3 cut(s) 311, 637, 1029
DdeI CTNAG 5 cut(s) 32, 72, 107, 175, 828
DpnI GATC 5 cut(s) 115, 141, 216, 335, 437
DpnII GATC 5 cut(s) 113, 139, 214, 333, 435
EaeI YGGCCR 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 388
Eco147I AGGCCT 1 cut(s) 254
Eco47I GGWCC 4 cut(s) 266, 385, 496, 519
Eco47III AGCGCT 1 cut(s) 951
Eco57I CTGAAG 1 cut(s) 426
Eco91I GGTNACC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 519
EcoO65I GGTNACC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 388
EcoT22I ATGCAT 1 cut(s) 901
ErhI CCWWGG 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 3
FaeI CATG 5 cut(s) 139, 240, 430, 436, 682
FaiI YATR 7 cut(s) 137, 238, 318, 428, 434, 680, 839
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FaqI GGGAC 2 cut(s) 398, 516
FatI CATG 5 cut(s) 135, 236, 426, 432, 678
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 447, 888
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 447, 888
FspBI CTAG 4 cut(s) 26, 158, 162, 947
GlaI GCGC 3 cut(s) 304, 400, 951
GluI GCNGC 2 cut(s) 447, 888
GsuI CTGGAG 2 cut(s) 269, 591
HaeII RGCGCY 1 cut(s) 953
HaeIII GGCC 6 cut(s) 24, 68, 230, 254, 431, 785
HapII CCGG 2 cut(s) 37, 576
HhaI GCGC 3 cut(s) 305, 401, 952
Hin1II CATG 5 cut(s) 139, 240, 430, 436, 682
Hin6I GCGC 3 cut(s) 303, 399, 950
HinP1I GCGC 3 cut(s) 303, 399, 950
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 460, 648, 1041
HpaII CCGG 2 cut(s) 37, 576
HphI GGTGA 1 cut(s) 994
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 108, 270, 496
Hpy188III TCNNGA 3 cut(s) 31, 769, 1054
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 265, 972
HpyCH4III ACNGT 2 cut(s) 814, 1033
HpyCH4IV ACGT 1 cut(s) 862
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 227, 509, 752, 896, 1018
HpyF3I CTNAG 5 cut(s) 32, 72, 107, 175, 828
HpySE526I ACGT 1 cut(s) 862
Hsp92II CATG 5 cut(s) 139, 240, 430, 436, 682
HspAI GCGC 3 cut(s) 303, 399, 950
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 5 cut(s) 113, 139, 214, 333, 435
LmnI GCTCC 3 cut(s) 566, 572, 697
Lsp1109I GCAGC 2 cut(s) 458, 874
LweI GCATC 3 cut(s) 672, 840, 886
MaeI CTAG 4 cut(s) 26, 158, 162, 947
MaeII ACGT 1 cut(s) 862
MaeIII GTNAC 5 cut(s) 40, 94, 117, 877, 908
MalI GATC 5 cut(s) 115, 141, 216, 335, 437
MboI GATC 5 cut(s) 113, 139, 214, 333, 435
MboII GAAGA 2 cut(s) 137, 477
MfeI CAATTG 3 cut(s) 513, 623, 975
MlsI TGGCCA 1 cut(s) 431
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 2 cut(s) 293, 715
MnlI CCTC 8 cut(s) 79, 94, 159, 244, 532, 688, 731, 776
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 901
MscI TGGCCA 1 cut(s) 431
MseI TTAA 2 cut(s) 855, 930
MslI CAYNNNNRTG 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 2 cut(s) 53, 887
MspI CCGG 2 cut(s) 37, 576
MspR9I CCNGG 2 cut(s) 38, 645
MunI CAATTG 3 cut(s) 513, 623, 975
MvaI CCWGG 1 cut(s) 645
MvnI CGCG 2 cut(s) 303, 540
MwoI GCNNNNNNNGC 6 cut(s) 218, 227, 509, 752, 896, 1018
NciI CCSGG 1 cut(s) 38
NdeII GATC 5 cut(s) 113, 139, 214, 333, 435
NlaIII CATG 5 cut(s) 139, 240, 430, 436, 682
NlaIV GGNNCC 4 cut(s) 386, 419, 520, 574
NmuCI GTSAC 3 cut(s) 117, 877, 908
NsiI ATGCAT 1 cut(s) 901
NspV TTCGAA 1 cut(s) 186
PceI AGGCCT 1 cut(s) 254
PfeI GAWTC 2 cut(s) 648, 1041
PflFI GACNNNGTC 1 cut(s) 662
PkrI GCNGC 2 cut(s) 448, 889
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 863
PpuMI RGGWCCY 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 643
PspEI GGTNACC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 4 cut(s) 386, 419, 520, 574
PspPI GGNCC 5 cut(s) 229, 266, 385, 496, 519
PspPPI RGGWCCY 1 cut(s) 519
PsrI GAACNNNNNNTAC 2 cut(s) 620, 652
PsyI GACNNNGTC 1 cut(s) 662
PvuI CGATCG 1 cut(s) 116
PvuII CAGCTG 2 cut(s) 53, 887
RsaI GTAC 3 cut(s) 312, 638, 1030
RsaNI GTAC 3 cut(s) 311, 637, 1029
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 2 cut(s) 855, 930
SatI GCNGC 2 cut(s) 447, 888
Sau3AI GATC 5 cut(s) 113, 139, 214, 333, 435
Sau96I GGNCC 5 cut(s) 229, 266, 385, 496, 519
ScaI AGTACT 1 cut(s) 1030
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 2 cut(s) 38, 645
SfaNI GCATC 3 cut(s) 672, 840, 886
SfcI CTRYAG 2 cut(s) 715, 882
SfuI TTCGAA 1 cut(s) 186
SinI GGWCC 4 cut(s) 266, 385, 496, 519
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
SseBI AGGCCT 1 cut(s) 254
SsiI CCGC 2 cut(s) 278, 301
SspMI CTAG 4 cut(s) 26, 158, 162, 947
StuI AGGCCT 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 36, 643
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 2 cut(s) 814, 1033
TaiI ACGT 1 cut(s) 865
TaqI TCGA 4 cut(s) 124, 151, 186, 618
TatI WGTACW 1 cut(s) 1028
TfiI GAWTC 2 cut(s) 648, 1041
Tru1I TTAA 2 cut(s) 855, 930
Tru9I TTAA 2 cut(s) 855, 930
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 3 cut(s) 117, 877, 908
TseI GCWGC 2 cut(s) 446, 887
Tsp45I GTSAC 3 cut(s) 117, 877, 908
TspDTI ATGAA 5 cut(s) 333, 360, 362, 954, 1002
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 662
VpaK11BI GGWCC 4 cut(s) 266, 385, 496, 519
XapI RAATTY 1 cut(s) 547
XspI CTAG 4 cut(s) 26, 158, 162, 947
ZrmI AGTACT 1 cut(s) 1030
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.