Rh6BG440600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000358
Physical Location & Seq
Forward (+)
65843811 .. 65844167
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG440600.1

Sequence Viewer

Length: 357 bp
ATGCTGGGAAACTTGTTTGCATACCTGCTCTCGCTCAAGAAAGTGCAAATGGGTTCCCTCTACTCTGTGACAGACAACACAATTGTTGCTCTTGCTCGGAATTGCCTCAATTTGGAGCTGCTTGAACTGAGAGGTTGTAAGGTGACTGGAGCTGGTATTCGTGCATTTTCGGGTCACAAGTGCTTACAGACCCTTAATCTCTTCTGTTGTGTGTCTGGTATTAGAGGGTCTGATTTAGAACGTTTGGCGCGAAAATGCCCGGCATTGAAGTCTATTGTGGTGGATGAAAGATTGAGGAATAGGATGTGGCGTGTAATGCGAGATGGCACTATTAGCAAATTTCTGGAGTTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

118

Amino Acids

13.25

Weight (kDa)

9.69

Isoelectric Point (pI)

11.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AccII CGCG 1 cut(s) 250
AclI AACGTT 1 cut(s) 241
AcsI RAATTY 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 125, 268
AluBI AGCT 2 cut(s) 118, 152
AluI AGCT 2 cut(s) 118, 152
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 338
AspLEI GCGC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 154
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 317
BcnI CCSGG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 33
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 260
BpmI CTGGAG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 151
BseGI GGATG 2 cut(s) 289, 309
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 250
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 55
BspMI ACCTGC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 289, 309
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 316, 333
BstSCI CCNGG 1 cut(s) 258
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 105
BtsCI GGATG 2 cut(s) 289, 309
BveI ACCTGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 250
CviJI RGCY 2 cut(s) 118, 152
CviKI_1 RGCY 2 cut(s) 118, 152
DdeI CTNAG 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
FaiI YATR 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 2 cut(s) 296, 316
Fsp4HI GCNGC 1 cut(s) 119
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 119
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 168
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 250
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 99, 232
Hpy188III TCNNGA 2 cut(s) 37, 344
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 3 cut(s) 20, 46, 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 333
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 241
HspAI GCGC 1 cut(s) 248
LmnI GCTCC 2 cut(s) 115, 149
LpnPI CCDG 6 cut(s) 38, 132, 138, 201, 273, 329
Lsp1109I GCAGC 1 cut(s) 105
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 67, 142, 173
MboII GAAGA 1 cut(s) 193
MfeI CAATTG 1 cut(s) 81
MluCI AATT 4 cut(s) 81, 100, 109, 338
MnlI CCTC 5 cut(s) 68, 116, 125, 218, 288
MseI TTAA 1 cut(s) 195
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 1 cut(s) 81
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 316, 333
NciI CCSGG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 55
NmuCI GTSAC 3 cut(s) 67, 142, 173
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PkrI GCNGC 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 260
SetI ASST 6 cut(s) 27, 120, 136, 144, 154, 244
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 4 cut(s) 81, 100, 109, 338
StyD4I CCNGG 1 cut(s) 258
TaiI ACGT 1 cut(s) 244
TasI AATT 4 cut(s) 81, 100, 109, 338
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseFI GTSAC 3 cut(s) 67, 142, 173
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 3 cut(s) 67, 142, 173
TspDTI ATGAA 2 cut(s) 300, 340
XapI RAATTY 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.