Rw2G043480

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000358
Physical Location & Seq
Forward (+)
69946604 .. 69947728
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043480.1

Sequence Viewer

Length: 1125 bp
ATGGCTTCCAACACCGAAGAATCAGCGAAAGTTTCTCTCTTGAGTGTCGACGAACTAGGTTCAATCCTCAAGTTGGTTACCGACCCAGATGACAGAAAATCGTTCTCCCAGGTCTGCAAGCAATGGTCCAAAGTCGAGGGTCTAAACCGATCATCACTCCGTCTTCTCCAATCCGATCTTCTCCGCCGTGTACTACCCAGATGCCCAAATTTGATCACTTTCCAAACCCAGGAGCCCCTCTCCGACGCCGACCTCGAATTCTTAGCCCAAACATGTCCCAGACTCCAAGTCATCAACCTCAGTATTTGTGACAATGAATCCAAGGTTCAAGATTTGGTGTCTGATGGTGTTTGCGCTCTGGCAAATCAGTGTCCGAATATAACAAAGCTTTTGCTTAGAAGAAGACTGAAGGCAGGAGTTGCTTCGGTGATGAAGTTATTACCGAACTTGACGCATTTGGATTTAGGGTTATGTCATAAGGTTGAGGACAACGACATTGAAGCAATTGGGTCGGCGGCCAGTTCGATTACCTATTTGAATGTGGAATCTTGTGTTTGTATCACTGATCGCGGTTTGGGGTTTCTGTCACATGCGTTATTTTCGAAAACATTGAAGACATTGGTGCTTGCTAAGTGTAGTAAGATCACTGATTCAGGGGTTTCGGTTTTGCAGAACATGTGTTGCTTGGAGCATCTGAATTTGGCTAACCATGGAGCGAAAATCACTGATGTAGGAGGTCTGGCAATATCGGAAATCAAAACTCTGAAGAAACTGAACTTGTCTGGGCTGATGTCCCTGACAGACCAAACCGTAGTTGCTCTTGCGCAAAATTGCCTCAACTTGGAGGTGCTTGATTTGAGTGACTGTCAGAGGGTGACGAGAGCTGGTCTTCGTGCATTTTCGAGTCACACATGCCTAAATTCTCTTGTGTTGCACTATTGTTTTAAGTTTTTTGGGTCTGATTTGGAACACTTGGTGCTGGAGTGTCCGACATTGAAGTGTATTGTGGTGGATGAATATGTGGGACGTCAGATATTGCCGGAAATGCAAGAGAGCACTAGAAGATGTGTGAGGTACAAGTTTATTTGTGATTGGTCTTTCAAAGACCTTGAGAATTTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

374

Amino Acids

41.43

Weight (kDa)

6.7

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 19 - 51 3.4e-07 F-box
DUF7885 PF25372 64 - 227 1.4e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1030
Acc16I TGCGCA 1 cut(s) 825
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 570
AciI CCGC 3 cut(s) 184, 515, 570
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 5 cut(s) 208, 257, 697, 919, 1114
AcuI CTGAAG 2 cut(s) 428, 785
AcyI GRCGYC 2 cut(s) 246, 1027
AdeI CACNNNGTG 1 cut(s) 976
AfaI GTAC 2 cut(s) 192, 1076
AfiI CCNNNNNNNGG 3 cut(s) 73, 229, 841
AflIII ACRYGT 2 cut(s) 272, 675
AgsI TTSAA 7 cut(s) 63, 329, 500, 538, 613, 997, 1102
AhdI GACNNNNNGTC 1 cut(s) 287
AjnI CCWGG 2 cut(s) 108, 228
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 2 cut(s) 388, 884
AluI AGCT 2 cut(s) 388, 884
Alw21I GWGCWC 1 cut(s) 1058
AoxI GGCC 1 cut(s) 516
ApoI RAATTY 5 cut(s) 208, 257, 697, 919, 1114
AspLEI GCGC 2 cut(s) 356, 826
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 439, 886
AsuII TTCGAA 1 cut(s) 602
AvaII GGWCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 4 cut(s) 155, 409, 620, 881
Bbv12I GWGCWC 1 cut(s) 1058
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 171
BcgI CGANNNNNNTGC 2 cut(s) 492, 526
BciT130I CCWGG 2 cut(s) 110, 230
BclI TGATCA 1 cut(s) 213
BfaI CTAG 2 cut(s) 56, 1059
BisI GCNGC 1 cut(s) 516
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 2 cut(s) 110, 230
Bme18I GGWCC 1 cut(s) 126
BmeRI GACNNNNNGTC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 110, 230
BmsI GCATC 2 cut(s) 191, 700
BpiI GAAGAC 4 cut(s) 155, 409, 620, 881
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 1001
Bpu14I TTCGAA 1 cut(s) 602
BpuEI CTTGAG 2 cut(s) 53, 61
BsaHI GRCGYC 2 cut(s) 246, 1027
BsaJI CCNNGG 4 cut(s) 108, 228, 321, 709
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 229, 841
Bse1I ACTGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 110, 230
BseDI CCNNGG 4 cut(s) 108, 228, 321, 709
BseGI GGATG 1 cut(s) 1018
BseLI CCNNNNNNNGG 3 cut(s) 73, 229, 841
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 1 cut(s) 518
BsiHKAI GWGCWC 1 cut(s) 1058
BsiSI CCGG 1 cut(s) 1040
BslFI GGGAC 3 cut(s) 261, 778, 1038
BslI CCNNNNNNNGG 3 cut(s) 73, 229, 841
BsmFI GGGAC 3 cut(s) 261, 778, 1038
BsnI GGCC 1 cut(s) 518
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 2 cut(s) 237, 1058
Bsp143I GATC 5 cut(s) 149, 175, 213, 565, 642
Bsp19I CCATGG 1 cut(s) 709
BspACI CCGC 3 cut(s) 184, 515, 570
BspANI GGCC 1 cut(s) 518
BspCNI CTCAG 1 cut(s) 312
BspFNI CGCG 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 234
BspT104I TTCGAA 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 519
BssECI CCNNGG 4 cut(s) 108, 228, 321, 709
BssMI GATC 5 cut(s) 149, 175, 213, 565, 642
BssNI GRCGYC 2 cut(s) 246, 1027
BssT1I CCWWGG 2 cut(s) 321, 709
Bst2UI CCWGG 2 cut(s) 110, 230
Bst4CI ACNGT 2 cut(s) 811, 866
BstACI GRCGYC 2 cut(s) 246, 1027
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 119, 627
BstDEI CTNAG 4 cut(s) 262, 299, 395, 630
BstDSI CCRYGG 1 cut(s) 709
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 1 cut(s) 1018
BstFNI CGCG 1 cut(s) 570
BstHHI GCGC 2 cut(s) 356, 826
BstKTI GATC 5 cut(s) 152, 178, 216, 568, 645
BstMBI GATC 5 cut(s) 149, 175, 213, 565, 642
BstMWI GCNNNNNNNGC 2 cut(s) 419, 1045
BstNI CCWGG 2 cut(s) 110, 230
BstNSI RCATGY 4 cut(s) 276, 593, 679, 915
BstPI GGTNACC 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 108, 228
BstUI CGCG 1 cut(s) 570
BstV2I GAAGAC 4 cut(s) 155, 409, 620, 881
BsuRI GGCC 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 709
BtsCI GGATG 1 cut(s) 1018
BtsIMutI CAGTG 4 cut(s) 374, 561, 645, 723
Cac8I GCNNGC 2 cut(s) 119, 627
CfoI GCGC 2 cut(s) 356, 826
Cfr13I GGNCC 1 cut(s) 126
CseI GACGC 2 cut(s) 254, 460
Csp6I GTAC 2 cut(s) 191, 1075
CviAII CATG 5 cut(s) 273, 590, 676, 710, 912
CviJI RGCY 8 cut(s) 5, 235, 266, 388, 518, 704, 787, 884
CviKI_1 RGCY 8 cut(s) 5, 235, 266, 388, 518, 704, 787, 884
CviQI GTAC 2 cut(s) 191, 1075
DdeI CTNAG 4 cut(s) 262, 299, 395, 630
DpnI GATC 5 cut(s) 151, 177, 215, 567, 644
DpnII GATC 5 cut(s) 149, 175, 213, 565, 642
DraIII CACNNNGTG 1 cut(s) 976
DriI GACNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 516
Eam1105I GACNNNNNGTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 321, 709
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 428, 785
Eco91I GGTNACC 1 cut(s) 76
EcoO65I GGTNACC 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 108, 228
EcoT14I CCWWGG 2 cut(s) 321, 709
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 2 cut(s) 321, 709
FaeI CATG 5 cut(s) 276, 593, 679, 713, 915
FaiI YATR 9 cut(s) 274, 380, 472, 477, 591, 677, 711, 913, 1020
FaqI GGGAC 3 cut(s) 261, 778, 1038
FatI CATG 5 cut(s) 272, 589, 675, 709, 911
FbaI TGATCA 1 cut(s) 213
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 1 cut(s) 1025
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 516
FspBI CTAG 2 cut(s) 56, 1059
FspI TGCGCA 1 cut(s) 825
GlaI GCGC 2 cut(s) 355, 825
GluI GCNGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 1001
HaeIII GGCC 1 cut(s) 518
HapII CCGG 1 cut(s) 1040
HgaI GACGC 2 cut(s) 254, 460
HhaI GCGC 2 cut(s) 356, 826
Hin1I GRCGYC 2 cut(s) 246, 1027
Hin1II CATG 5 cut(s) 276, 593, 679, 713, 915
Hin6I GCGC 2 cut(s) 354, 824
HinP1I GCGC 2 cut(s) 354, 824
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 6 cut(s) 20, 282, 317, 545, 650, 904
HpaII CCGG 1 cut(s) 1040
HphI GGTGA 2 cut(s) 439, 886
Hpy166II GTNNAC 2 cut(s) 49, 191
Hpy188III TCNNGA 2 cut(s) 40, 329
Hpy8I GTNNAC 2 cut(s) 49, 191
Hpy99I CGWCG 2 cut(s) 53, 248
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 2 cut(s) 811, 866
HpyCH4IV ACGT 1 cut(s) 1027
HpyCH4V TGCA 5 cut(s) 117, 670, 896, 934, 1048
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 1045
HpyF3I CTNAG 4 cut(s) 262, 299, 395, 630
HpySE526I ACGT 1 cut(s) 1027
Hsp92I GRCGYC 2 cut(s) 246, 1027
Hsp92II CATG 5 cut(s) 276, 593, 679, 713, 915
HspAI GCGC 2 cut(s) 354, 824
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 5 cut(s) 149, 175, 213, 565, 642
LmnI GCTCC 3 cut(s) 232, 688, 713
LweI GCATC 2 cut(s) 191, 700
MaeI CTAG 2 cut(s) 56, 1059
MaeII ACGT 1 cut(s) 1027
MaeIII GTNAC 6 cut(s) 76, 308, 585, 860, 874, 905
MalI GATC 5 cut(s) 151, 177, 215, 567, 644
MboI GATC 5 cut(s) 149, 175, 213, 565, 642
MboII GAAGA 9 cut(s) 29, 155, 170, 411, 414, 625, 778, 881, 1074
MfeI CAATTG 1 cut(s) 504
MhlI GDGCHC 2 cut(s) 237, 1058
MluCI AATT 7 cut(s) 208, 257, 504, 697, 829, 919, 1114
MlyI GAGTC 2 cut(s) 276, 913
MmeI TCCRAC 3 cut(s) 33, 267, 1013
MseI TTAA 2 cut(s) 945, 1118
MslI CAYNNNNRTG 1 cut(s) 997
MspI CCGG 1 cut(s) 1040
MspR9I CCNGG 2 cut(s) 110, 230
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 2 cut(s) 110, 230
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 419, 1045
NcoI CCATGG 1 cut(s) 709
NdeII GATC 5 cut(s) 149, 175, 213, 565, 642
NlaIII CATG 5 cut(s) 276, 593, 679, 713, 915
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 5 cut(s) 308, 585, 860, 874, 905
NsbI TGCGCA 1 cut(s) 825
NspI RCATGY 4 cut(s) 276, 593, 679, 915
NspV TTCGAA 1 cut(s) 602
PciI ACATGT 2 cut(s) 272, 675
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 4 cut(s) 20, 317, 545, 650
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 2 cut(s) 276, 912
PpsI GAGTC 2 cut(s) 276, 912
PscI ACATGT 2 cut(s) 272, 675
Psp6I CCWGG 2 cut(s) 108, 228
PspEI GGTNACC 1 cut(s) 76
PspGI CCWGG 2 cut(s) 108, 228
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 126
RsaI GTAC 2 cut(s) 192, 1076
RsaNI GTAC 2 cut(s) 191, 1075
RseI CAYNNNNRTG 1 cut(s) 997
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 945, 1118
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 5 cut(s) 149, 175, 213, 565, 642
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 2 cut(s) 276, 913
ScrFI CCNGG 2 cut(s) 110, 230
SduI GDGCHC 2 cut(s) 237, 1058
SfaNI GCATC 2 cut(s) 191, 700
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 3 cut(s) 40, 68, 1109
SmoI CTYRAG 3 cut(s) 40, 68, 1109
Sse9I AATT 7 cut(s) 208, 257, 504, 697, 829, 919, 1114
SsiI CCGC 3 cut(s) 184, 515, 570
SspMI CTAG 2 cut(s) 56, 1059
StyD4I CCNGG 2 cut(s) 108, 228
StyI CCWWGG 2 cut(s) 321, 709
TaaI ACNGT 2 cut(s) 811, 866
TaiI ACGT 1 cut(s) 1030
TaqI TCGA 6 cut(s) 48, 135, 255, 524, 602, 902
TasI AATT 7 cut(s) 208, 257, 504, 697, 829, 919, 1114
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 4 cut(s) 20, 317, 545, 650
Tru1I TTAA 2 cut(s) 945, 1118
Tru9I TTAA 2 cut(s) 945, 1118
TscAI CASTG 4 cut(s) 374, 568, 652, 730
TseFI GTSAC 5 cut(s) 308, 585, 860, 874, 905
Tsp45I GTSAC 5 cut(s) 308, 585, 860, 874, 905
TspDTI ATGAA 3 cut(s) 330, 446, 1029
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 4 cut(s) 374, 568, 652, 730
VpaK11BI GGWCC 1 cut(s) 126
XapI RAATTY 5 cut(s) 208, 257, 697, 919, 1114
XceI RCATGY 4 cut(s) 276, 593, 679, 915
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 2 cut(s) 56, 1059
ZraI GACGTC 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.