Rorug02G0460900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000358
Physical Location & Seq
Forward (+)
59264385 .. 59264666
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0460900.1

Sequence Viewer

Length: 282 bp
ATGCAAGCTGGGAAGAACCAAACCTTGACCTATAAGAAAAGAGGTCGACAAGAGGCAACTGTCCCTTTTCCTAAGAAATTCAAAACCATTCTGGGTGGTAAGCTTCTCACACTCCATGCGGAAGCTCTTGATTTGGCTGAAGGTGAGGATGATGTCGCACTGGTGACACTGAAGAAGAGGTTGGGCAGACCGCTTAAAAGCAAGAACAAGGGTCCCTGGTCTCAAAACAAGGTGGGATTGACCCTTTTGAGCCTCACCTATCCTTCTGCTACTACTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

93

Amino Acids

10.18

Weight (kDa)

10.17

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 46
AciI CCGC 2 cut(s) 119, 191
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 2 cut(s) 159, 191
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 3 cut(s) 8, 103, 125
AluI AGCT 3 cut(s) 8, 103, 125
Alw26I GTCTC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 3 cut(s) 155, 175, 247
AvaII GGWCC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 213, 214
BmrFI CCNGG 1 cut(s) 217
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 165
BseYI CCCAGC 1 cut(s) 8
BslFI GGGAC 2 cut(s) 47, 198
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 2 cut(s) 47, 198
Bso31I GGTCTC 1 cut(s) 225
BspACI CCGC 2 cut(s) 119, 191
BspLI GGNNCC 2 cut(s) 213, 214
BspTNI GGTCTC 1 cut(s) 225
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 72, 279
BstF5I GGATG 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 158, 167
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 212
CviAII CATG 1 cut(s) 116
CviJI RGCY 5 cut(s) 8, 103, 125, 137, 252
CviKI_1 RGCY 5 cut(s) 8, 103, 125, 137, 252
DdeI CTNAG 2 cut(s) 72, 279
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 212
Eco57I CTGAAG 2 cut(s) 159, 191
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 215
FaeI CATG 1 cut(s) 119
FaiI YATR 2 cut(s) 33, 117
FaqI GGGAC 2 cut(s) 47, 198
FatI CATG 1 cut(s) 115
FblI GTMKAC 1 cut(s) 46
FokI GGATG 1 cut(s) 161
GsaI CCCAGC 1 cut(s) 12
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 101
HphI GGTGA 3 cut(s) 155, 175, 247
Hpy166II GTNNAC 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 2 cut(s) 134, 273
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 72, 279
Hsp92II CATG 1 cut(s) 119
KflI GGGWCCC 1 cut(s) 212
LpnPI CCDG 4 cut(s) 77, 146, 202, 229
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 3 cut(s) 25, 184, 187
MluCI AATT 1 cut(s) 77
MnlI CCTC 5 cut(s) 35, 46, 139, 171, 263
MseI TTAA 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 275
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 2 cut(s) 213, 214
NmuCI GTSAC 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 213, 214
PspPI GGNCC 1 cut(s) 212
PspPPI RGGWCCY 1 cut(s) 212
SalI GTCGAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 217
SinI GGWCC 1 cut(s) 212
Sse9I AATT 1 cut(s) 77
SsiI CCGC 2 cut(s) 119, 191
StyD4I CCNGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 46
TasI AATT 1 cut(s) 77
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 165, 174
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspRI CASTG 2 cut(s) 165, 174
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.