FvH4_6g06400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000358
Physical Location & Seq
Reverse (-)
3732748 .. 3733824
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06400.t1

Sequence Viewer

Length: 1077 bp
ATGAATAAGATAGGAGCTGACGAACTGGGCCAGATCCTGAGACTGGTCACCGACCCAGCTGATAGAAAATTAGCATCTCTGGTCTGCAAGGAGTGGTGGGTCATGGAGGGTCCGACCCGATCATCACTCCGAATTCTCAACCTCGATCATCTTCCTCGATTACTAACTAGGCACCCAAACTTAACCACATTCGAAACACCAAGGGTAATAAGCAATGCCGACCTCGCATTGGTGGCCCAGTCATACCCGAAATTGGAGGTCTTCATACTTGATTGCATACAGATTGAAGGCATAGATGACAGGAAGAATTTTCGGGCGCTTCAAAAAGTTGGGGACGAAGGTTTGTGCGCTGTGGCAAATGGGTGTCCCAAGTTGTCCAAGATTGTGATCAAAAGGTGTTTTGCTGGACTGCTTGGAATTATGTCCATGATTACTTCAGCAGCACATAACTTGACTCATTTGGATTTGTATACTTGTACTTTGGTTACTGACCAAGCCCTTGAAGCAATTGGTTCATCTAGTTGTCTCCTTCGCTTTTTGAATTTGAGATTTTGCACCAAAATTACTGATGTCGGATTGAGTTTCTTGGCAAATGGGTCTTGTTCAAAAACCATCGAGCAATTGAACCTTTACAGTTGCTTTGAAATCACAGATGACGGGGTCTCGCTTTTGTGCAAGATGCGTGTCTTGGAAGAGCTGGATTTGAGTTACATTGGCCAGCTAACTGATGTTGGAGGTCAGGCAATCTCCACAATTCGAACCCTCAAGAAGTTGAAGTTTCAGAATGTAATACAACTAACAGAAAGAACCGTTGTAGCTCTTGCTAAGAATTGCATAAACTTGGAGGTGCTTGATCTATGTGGTTGTACAAGCATCGCTATAACATGTATTGATGCATTTTCGGGTCATAAGTGCATGCGATTCCTCTATCTACTAGATTGTTCATGTAATGATTTAAGAGGACCTGCTTTCGAAAGACTAGCACTTGGATGCCCTTCATTGGAGTCGATTGTGGTTGAAGAATTTTGCAGAGAGAGGCTGTTGCAGGATATGCAAGAGAGTACTGTTAGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

359

Amino Acids

39.65

Weight (kDa)

5.83

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 9 - 41 1.7e-08 F-box
DUF7885 PF25372 140 - 275 1.2e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 973
AccB1I GGYRCC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 470
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 4 cut(s) 132, 307, 541, 1022
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 3 cut(s) 478, 868, 1063
AfiI CCNNNNNNNGG 4 cut(s) 43, 229, 253, 1000
AflIII ACRYGT 1 cut(s) 884
AgsI TTSAA 9 cut(s) 287, 323, 503, 541, 606, 625, 644, 775, 1019
AluBI AGCT 5 cut(s) 17, 59, 697, 721, 818
AluI AGCT 5 cut(s) 17, 59, 697, 721, 818
Alw26I GTCTC 3 cut(s) 34, 530, 667
AlwI GGATC 1 cut(s) 28
AlwNI CAGNNNCTG 1 cut(s) 37
AoxI GGCC 3 cut(s) 28, 234, 715
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 4 cut(s) 132, 307, 541, 1022
AspLEI GCGC 2 cut(s) 319, 350
AspS9I GGNCC 4 cut(s) 28, 110, 235, 962
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 3 cut(s) 192, 757, 972
AvaII GGWCC 2 cut(s) 110, 962
BalI TGGCCA 1 cut(s) 717
BanI GGYRCC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 452
BccI CCATC 1 cut(s) 620
BclI TGATCA 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 34, 530, 667
BfaI CTAG 4 cut(s) 168, 519, 935, 980
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 973
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
BmcAI AGTACT 1 cut(s) 1063
Bme18I GGWCC 2 cut(s) 110, 962
BmgT120I GGNCC 4 cut(s) 28, 110, 235, 962
BmiI GGNNCC 2 cut(s) 111, 173
BmrI ACTGGG 2 cut(s) 35, 232
BmsI GCATC 5 cut(s) 83, 669, 882, 883, 980
BmuI ACTGGG 2 cut(s) 35, 232
BpiI GAAGAC 1 cut(s) 253
Bpu14I TTCGAA 3 cut(s) 192, 757, 972
BpuEI CTTGAG 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 229, 253, 1000
Bse1I ACTGG 3 cut(s) 30, 48, 238
Bse3DI GCAATG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 995
BseJI GATNNNNATC 1 cut(s) 386
BseLI CCNNNNNNNGG 4 cut(s) 43, 229, 253, 1000
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 3 cut(s) 30, 48, 238
BseXI GCAGC 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 3 cut(s) 30, 236, 717
BshNI GGYRCC 1 cut(s) 171
BslFI GGGAC 2 cut(s) 347, 351
BslI CCNNNNNNNGG 4 cut(s) 43, 229, 253, 1000
BsmAI GTCTC 3 cut(s) 34, 530, 667
BsmFI GGGAC 2 cut(s) 347, 351
BsnI GGCC 3 cut(s) 30, 236, 717
Bso31I GGTCTC 1 cut(s) 667
Bsp119I TTCGAA 3 cut(s) 192, 757, 972
Bsp1407I TGTACA 1 cut(s) 866
Bsp143I GATC 5 cut(s) 33, 119, 145, 387, 853
BspANI GGCC 3 cut(s) 30, 236, 717
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 111, 173
BspMI ACCTGC 1 cut(s) 973
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 687
BspT104I TTCGAA 3 cut(s) 192, 757, 972
BspT107I GGYRCC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 866
BsrI ACTGG 3 cut(s) 30, 48, 238
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 5 cut(s) 33, 119, 145, 387, 853
BssNAI GTATAC 1 cut(s) 471
BssT1I CCWWGG 1 cut(s) 200
Bst1107I GTATAC 1 cut(s) 471
Bst4CI ACNGT 3 cut(s) 635, 811, 1066
Bst6I CTCTTC 1 cut(s) 687
BstAPI GCANNNNNTGC 1 cut(s) 1051
BstAUI TGTACA 1 cut(s) 866
BstBI TTCGAA 3 cut(s) 192, 757, 972
BstC8I GCNNGC 2 cut(s) 719, 917
BstDEI CTNAG 3 cut(s) 38, 825, 1074
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 995
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 2 cut(s) 319, 350
BstKTI GATC 5 cut(s) 36, 122, 148, 390, 856
BstMAI GTCTC 3 cut(s) 34, 530, 667
BstMBI GATC 5 cut(s) 33, 119, 145, 387, 853
BstMWI GCNNNNNNNGC 4 cut(s) 224, 233, 503, 1051
BstNSI RCATGY 2 cut(s) 888, 919
BstPI GGTNACC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BstZ17I GTATAC 1 cut(s) 471
BsuRI GGCC 3 cut(s) 30, 236, 717
BtgZI GCGATG 1 cut(s) 859
BtsCI GGATG 1 cut(s) 995
BveI ACCTGC 1 cut(s) 973
Cac8I GCNNGC 2 cut(s) 719, 917
CaiI CAGNNNCTG 1 cut(s) 37
CfoI GCGC 2 cut(s) 319, 350
Cfr13I GGNCC 4 cut(s) 28, 110, 235, 962
Csp6I GTAC 3 cut(s) 477, 867, 1062
CviAII CATG 5 cut(s) 103, 427, 885, 916, 945
CviQI GTAC 3 cut(s) 477, 867, 1062
DdeI CTNAG 3 cut(s) 38, 825, 1074
DpnI GATC 5 cut(s) 35, 121, 147, 389, 855
DpnII GATC 5 cut(s) 33, 119, 145, 387, 853
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 667
Eco47I GGWCC 2 cut(s) 110, 962
Eco57I CTGAAG 1 cut(s) 420
Eco91I GGTNACC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 962
EcoO65I GGTNACC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 898
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 5 cut(s) 106, 430, 888, 919, 948
FaqI GGGAC 2 cut(s) 347, 351
FatI CATG 5 cut(s) 102, 426, 884, 915, 944
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 1 cut(s) 1002
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 4 cut(s) 168, 519, 935, 980
GlaI GCGC 2 cut(s) 318, 349
GluI GCNGC 1 cut(s) 441
GsaI CCCAGC 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 3 cut(s) 30, 236, 717
HhaI GCGC 2 cut(s) 319, 350
Hin1II CATG 5 cut(s) 106, 430, 888, 919, 948
Hin6I GCGC 2 cut(s) 317, 348
HinP1I GCGC 2 cut(s) 317, 348
HinfI GANTC 3 cut(s) 454, 921, 1004
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 4 cut(s) 114, 131, 575, 783
Hpy188III TCNNGA 2 cut(s) 37, 766
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 4 cut(s) 281, 332, 539, 1005
HpyCH4III ACNGT 3 cut(s) 635, 811, 1066
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 233, 503, 1051
HpyF3I CTNAG 3 cut(s) 38, 825, 1074
Hsp92II CATG 5 cut(s) 106, 430, 888, 919, 948
HspAI GCGC 2 cut(s) 317, 348
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 5 cut(s) 33, 119, 145, 387, 853
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 5 cut(s) 83, 669, 882, 883, 980
MaeI CTAG 4 cut(s) 168, 519, 935, 980
MaeIII GTNAC 3 cut(s) 46, 484, 707
MalI GATC 5 cut(s) 35, 121, 147, 389, 855
MboI GATC 5 cut(s) 33, 119, 145, 387, 853
MboII GAAGA 5 cut(s) 143, 253, 316, 704, 1031
MfeI CAATTG 2 cut(s) 507, 620
MflI RGATCY 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 717
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 2 cut(s) 448, 1013
MmeI TCCRAC 3 cut(s) 137, 553, 712
Mox20I TGGCCA 1 cut(s) 717
Mph1103I ATGCAT 1 cut(s) 898
MscI TGGCCA 1 cut(s) 717
MseI TTAA 2 cut(s) 182, 956
MslI CAYNNNNRTG 1 cut(s) 988
Msp20I TGGCCA 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 59
MunI CAATTG 2 cut(s) 507, 620
MwoI GCNNNNNNNGC 4 cut(s) 224, 233, 503, 1051
NdeII GATC 5 cut(s) 33, 119, 145, 387, 853
NlaIII CATG 5 cut(s) 106, 430, 888, 919, 948
NlaIV GGNNCC 2 cut(s) 111, 173
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 898
NspI RCATGY 2 cut(s) 888, 919
NspV TTCGAA 3 cut(s) 192, 757, 972
PaeI GCATGC 1 cut(s) 919
PciI ACATGT 1 cut(s) 884
PciSI GCTCTTC 1 cut(s) 687
PfeI GAWTC 1 cut(s) 921
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 2 cut(s) 448, 1012
PpsI GAGTC 2 cut(s) 448, 1012
PpuMI RGGWCCY 1 cut(s) 962
PscI ACATGT 1 cut(s) 884
Psp5II RGGWCCY 1 cut(s) 962
PspEI GGTNACC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 111, 173
PspPI GGNCC 4 cut(s) 28, 110, 235, 962
PspPPI RGGWCCY 1 cut(s) 962
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 33
PsyI GACNNNGTC 1 cut(s) 659
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 3 cut(s) 478, 868, 1063
RsaNI GTAC 3 cut(s) 477, 867, 1062
RseI CAYNNNNRTG 1 cut(s) 988
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 2 cut(s) 182, 956
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 5 cut(s) 33, 119, 145, 387, 853
Sau96I GGNCC 4 cut(s) 28, 110, 235, 962
ScaI AGTACT 1 cut(s) 1063
SchI GAGTC 2 cut(s) 448, 1013
SfaNI GCATC 5 cut(s) 83, 669, 882, 883, 980
SfuI TTCGAA 3 cut(s) 192, 757, 972
SinI GGWCC 2 cut(s) 110, 962
SmiMI CAYNNNNRTG 1 cut(s) 988
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
SphI GCATGC 1 cut(s) 919
SspMI CTAG 4 cut(s) 168, 519, 935, 980
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 3 cut(s) 635, 811, 1066
TaqI TCGA 7 cut(s) 144, 157, 192, 615, 757, 972, 1007
TatI WGTACW 3 cut(s) 476, 866, 1061
TfiI GAWTC 1 cut(s) 921
Tru1I TTAA 2 cut(s) 182, 956
Tru9I TTAA 2 cut(s) 182, 956
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 5 cut(s) 17, 253, 504, 933, 987
Tth111I GACNNNGTC 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 110, 962
XapI RAATTY 4 cut(s) 132, 307, 541, 1022
XceI RCATGY 2 cut(s) 888, 919
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 4 cut(s) 168, 519, 935, 980
ZrmI AGTACT 1 cut(s) 1063
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.