Rroxscaffold_6G00412580

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000358
Physical Location & Seq
Forward (+)
35112093 .. 35113142
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412580.1

Sequence Viewer

Length: 1050 bp
ATGGATGCCCTATGTAACGATGAACTAGGCCTAATCTTGAACTGGGTTGATAGAAAATCATTCTCTCAGGTCTGTAAGCAATGGTGGGTAGCGGAGGGTTGGAACCGATCATGCATTCGTGTTCTCGAACTCGATCGTCTCCCTCGATTACTTGATAGATTTCCAAACTTGGTCACATTCCAAACATGTCGATCTCTAAGCAACGCTGACCTCGAATTATTAGCCCAAAGATGTCCCAAACTAGAGGTCATCGACCTTACAACACCGGTGCGGTCCTTTAGTGTAGTTGGGACCCGAGGTCTATGCACACTAGCAAATAAGTGTCCCAGATTATCCAAGGTTGTCCTTCGTGGGAGATATTATAAGATTGAGGATGATGGAATTGTGTCTTTCATAACTTTAGCGGATAACTTGAAGCATTTGAATTTGGAATTGTGTAAGCTGGTTTCTGACAAAACCCTTGAAGCAATTGGGTCCTCAAGTTGTCCGATTACCGTTTTGAATTTGGAAAGCTGTGACATTACGGATTGTGGATTGAGATTTTTGACAAATGGGTCTTGCTCAAAAACCATAAAGGAATTGGTCCTTAAGGGGTGTCATAGAATCACTGATTCTGGGGTCTCACTCTTGCAGAAGATGTGTGTCTTGGAGGAGCTAAATTTGACTCATTGTCGGCGAGTCACTGAAGTTGGAGGCGTGGCGATCTCCGCAATTCTAACCCTCAAGAAATTGAACTTTGCTTGGGGCCCCAAAGTCACAGACCGCACCATTCTCGCTCTCGCTGAGAATTGCCTCAACTTAGAGATGCTTAATTTGAGAGGTAATGGATTCGTGACCGGAGTTGGTGTTCGTGCATTTTTAAGTCACAAACACTTACAATCCCTTGATCTACGCTACATTCGGATTCATATTAGTGGATCTGATTTGGAAGACCTAGTGCTTGCATGCCCATCATTGAAGTCTATACTGGTAGAGGGTGGATGGAGAAAAAGGTTGTTGCGTGAGATGCAAGAAAGCACTCTTAGCAGATTCGTGATCAGGTTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

349

Amino Acids

39.2

Weight (kDa)

8.81

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 134 - 212 5.1e-13 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 215 - 320 1.6e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AasI GACNNNNNNGTC 1 cut(s) 553
AciI CCGC 5 cut(s) 92, 271, 404, 708, 763
AclWI GGATC 1 cut(s) 925
AcsI RAATTY 3 cut(s) 424, 502, 658
AcuI CTGAAG 1 cut(s) 705
AflII CTTAAG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 8 cut(s) 40, 415, 424, 464, 502, 733, 958, 1045
AhdI GACNNNNNGTC 2 cut(s) 297, 669
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 3 cut(s) 442, 513, 655
AluI AGCT 3 cut(s) 442, 513, 655
Alw26I GTCTC 2 cut(s) 143, 625
AlwI GGATC 1 cut(s) 925
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 2 cut(s) 28, 745
ApaI GGGCCC 1 cut(s) 749
ApoI RAATTY 3 cut(s) 424, 502, 658
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
AsiGI ACCGGT 1 cut(s) 265
AspS9I GGNCC 6 cut(s) 273, 291, 474, 583, 745, 746
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 4 cut(s) 273, 291, 474, 583
BaeGI GKGCMC 1 cut(s) 749
BanII GRGCYC 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 936
BccI CCATC 3 cut(s) 371, 958, 975
BcgI CGANNNNNNTGC 4 cut(s) 285, 319, 754, 788
BclI TGATCA 1 cut(s) 1035
BcoDI GTCTC 2 cut(s) 143, 625
BfaI CTAG 4 cut(s) 26, 242, 311, 935
BfrI CTTAAG 1 cut(s) 587
Bme18I GGWCC 4 cut(s) 273, 291, 474, 583
BmeRI GACNNNNNGTC 2 cut(s) 297, 669
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 6 cut(s) 273, 291, 474, 583, 745, 746
BmiI GGNNCC 7 cut(s) 104, 292, 293, 475, 746, 747, 748
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 795, 996
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 936
BpuEI CTTGAG 2 cut(s) 463, 707
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 2 cut(s) 295, 336
BsaWI WCCGGW 2 cut(s) 265, 836
BsaXI ACNNNNNCTCC 2 cut(s) 831, 861
Bse118I RCCGGY 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 47, 972
Bse3DI GCAATG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 295, 336
BseGI GGATG 3 cut(s) 10, 379, 986
BseMI GCAATG 1 cut(s) 86
BseMII CTCAG 2 cut(s) 80, 774
BseNI ACTGG 2 cut(s) 47, 972
BseRI GAGGAG 1 cut(s) 665
BseSI GKGCMC 1 cut(s) 749
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 30, 747
BshTI ACCGGT 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 2 cut(s) 266, 837
BslFI GGGAC 3 cut(s) 219, 304, 309
BsmAI GTCTC 2 cut(s) 143, 625
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 3 cut(s) 219, 304, 309
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 2 cut(s) 30, 747
Bso31I GGTCTC 1 cut(s) 625
BsoBI CYCGRG 1 cut(s) 294
Bsp120I GGGCCC 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 749
Bsp143I GATC 7 cut(s) 107, 133, 191, 702, 886, 917, 1035
BspACI CCGC 5 cut(s) 92, 271, 404, 708, 763
BspANI GGCC 2 cut(s) 30, 747
BspCNI CTCAG 2 cut(s) 79, 775
BspLI GGNNCC 7 cut(s) 104, 292, 293, 475, 746, 747, 748
BspPI GGATC 1 cut(s) 925
BspTI CTTAAG 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 625
BsrDI GCAATG 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 265
BsrI ACTGG 2 cut(s) 47, 972
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 295, 336
BssMI GATC 7 cut(s) 107, 133, 191, 702, 886, 917, 1035
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 496
BstAFI CTTAAG 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 942, 946
BstDEI CTNAG 5 cut(s) 66, 197, 783, 799, 1022
BstF5I GGATG 3 cut(s) 10, 379, 986
BstKTI GATC 7 cut(s) 110, 136, 194, 705, 889, 920, 1038
BstMAI GTCTC 2 cut(s) 143, 625
BstMBI GATC 7 cut(s) 107, 133, 191, 702, 886, 917, 1035
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 3 cut(s) 707, 1006, 1023
BstNSI RCATGY 2 cut(s) 189, 948
BstSLI GKGCMC 1 cut(s) 749
BstV2I GAAGAC 1 cut(s) 936
BstX2I RGATCY 1 cut(s) 917
BstYI RGATCY 1 cut(s) 917
BsuRI GGCC 2 cut(s) 30, 747
BtsCI GGATG 3 cut(s) 10, 379, 986
BtsIMutI CAGTG 2 cut(s) 606, 681
Cac8I GCNNGC 2 cut(s) 942, 946
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 6 cut(s) 273, 291, 474, 583, 745, 746
CspAI ACCGGT 1 cut(s) 265
CviAII CATG 3 cut(s) 111, 186, 945
CviJI RGCY 6 cut(s) 30, 224, 442, 513, 655, 747
CviKI_1 RGCY 6 cut(s) 30, 224, 442, 513, 655, 747
DdeI CTNAG 5 cut(s) 66, 197, 783, 799, 1022
DpnI GATC 7 cut(s) 109, 135, 193, 704, 888, 919, 1037
DpnII GATC 7 cut(s) 107, 133, 191, 702, 886, 917, 1035
DrdI GACNNNNNNGTC 1 cut(s) 553
DriI GACNNNNNGTC 2 cut(s) 297, 669
DseDI GACNNNNNNGTC 1 cut(s) 553
Eam1105I GACNNNNNGTC 2 cut(s) 297, 669
Eco130I CCWWGG 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 749
Eco31I GGTCTC 1 cut(s) 625
Eco47I GGWCC 4 cut(s) 273, 291, 474, 583
Eco57I CTGAAG 1 cut(s) 705
Eco88I CYCGRG 1 cut(s) 294
EcoO109I RGGNCCY 4 cut(s) 291, 474, 745, 746
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 749
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 3 cut(s) 114, 189, 948
FaqI GGGAC 3 cut(s) 219, 304, 309
FatI CATG 3 cut(s) 110, 185, 944
FbaI TGATCA 1 cut(s) 1035
FokI GGATG 3 cut(s) 17, 386, 993
FriOI GRGCYC 1 cut(s) 749
FspBI CTAG 4 cut(s) 26, 242, 311, 935
HaeIII GGCC 2 cut(s) 30, 747
HapII CCGG 2 cut(s) 266, 837
Hin1II CATG 3 cut(s) 114, 189, 948
HinfI GANTC 7 cut(s) 603, 611, 664, 678, 828, 904, 1029
HpaII CCGG 2 cut(s) 266, 837
Hpy188I TCNGA 4 cut(s) 451, 489, 903, 922
Hpy188III TCNNGA 5 cut(s) 37, 125, 724, 832, 1033
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4V TGCA 6 cut(s) 114, 306, 631, 854, 944, 1009
HpyF10VI GCNNNNNNNGC 3 cut(s) 707, 1006, 1023
HpyF3I CTNAG 5 cut(s) 66, 197, 783, 799, 1022
Hsp92II CATG 3 cut(s) 114, 189, 948
KflI GGGWCCC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 1035
Kzo9I GATC 7 cut(s) 107, 133, 191, 702, 886, 917, 1035
LmnI GCTCC 1 cut(s) 652
LpnPI CCDG 9 cut(s) 28, 53, 279, 340, 428, 600, 850, 953, 1024
LweI GCATC 2 cut(s) 795, 996
MaeI CTAG 4 cut(s) 26, 242, 311, 935
MaeIII GTNAC 7 cut(s) 14, 172, 515, 679, 754, 832, 863
MalI GATC 7 cut(s) 109, 135, 193, 704, 888, 919, 1037
MboI GATC 7 cut(s) 107, 133, 191, 702, 886, 917, 1035
MboII GAAGA 2 cut(s) 646, 941
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 1 cut(s) 749
MlyI GAGTC 2 cut(s) 658, 687
MmeI TCCRAC 2 cut(s) 80, 670
Mph1103I ATGCAT 1 cut(s) 116
MseI TTAA 3 cut(s) 588, 810, 860
MslI CAYNNNNRTG 1 cut(s) 912
MspCI CTTAAG 1 cut(s) 587
MspI CCGG 2 cut(s) 266, 837
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 707, 1006, 1023
NdeII GATC 7 cut(s) 107, 133, 191, 702, 886, 917, 1035
NlaIII CATG 3 cut(s) 114, 189, 948
NlaIV GGNNCC 7 cut(s) 104, 292, 293, 475, 746, 747, 748
NmuCI GTSAC 6 cut(s) 172, 515, 679, 754, 832, 863
NsiI ATGCAT 1 cut(s) 116
NspI RCATGY 2 cut(s) 189, 948
PaeI GCATGC 1 cut(s) 948
PceI AGGCCT 1 cut(s) 30
PciI ACATGT 1 cut(s) 185
PcsI WCGNNNNNNNCGW 2 cut(s) 142, 210
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 5 cut(s) 603, 611, 828, 904, 1029
PinAI ACCGGT 1 cut(s) 265
Ple19I CGATCG 1 cut(s) 136
PleI GAGTC 2 cut(s) 658, 686
PpsI GAGTC 2 cut(s) 658, 686
PpuMI RGGWCCY 2 cut(s) 291, 474
PscI ACATGT 1 cut(s) 185
PsiI TTATAA 1 cut(s) 363
Psp5II RGGWCCY 2 cut(s) 291, 474
PspN4I GGNNCC 7 cut(s) 104, 292, 293, 475, 746, 747, 748
PspOMI GGGCCC 1 cut(s) 745
PspPI GGNCC 6 cut(s) 273, 291, 474, 583, 745, 746
PspPPI RGGWCCY 2 cut(s) 291, 474
PsuI RGATCY 1 cut(s) 917
PvuI CGATCG 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 912
SaqAI TTAA 3 cut(s) 588, 810, 860
Sau3AI GATC 7 cut(s) 107, 133, 191, 702, 886, 917, 1035
Sau96I GGNCC 6 cut(s) 273, 291, 474, 583, 745, 746
SchI GAGTC 2 cut(s) 658, 687
SduI GDGCHC 1 cut(s) 749
SfaNI GCATC 2 cut(s) 795, 996
SgrAI CRCCGGYG 1 cut(s) 265
SinI GGWCC 4 cut(s) 273, 291, 474, 583
SmiMI CAYNNNNRTG 1 cut(s) 912
SmlI CTYRAG 3 cut(s) 478, 587, 722
SmoI CTYRAG 3 cut(s) 478, 587, 722
SphI GCATGC 1 cut(s) 948
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 5 cut(s) 92, 271, 404, 708, 763
SspMI CTAG 4 cut(s) 26, 242, 311, 935
StuI AGGCCT 1 cut(s) 30
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 496
TaqI TCGA 6 cut(s) 126, 132, 145, 190, 213, 252
TfiI GAWTC 5 cut(s) 603, 611, 828, 904, 1029
Tru1I TTAA 3 cut(s) 588, 810, 860
Tru9I TTAA 3 cut(s) 588, 810, 860
TscAI CASTG 2 cut(s) 613, 688
TseFI GTSAC 6 cut(s) 172, 515, 679, 754, 832, 863
Tsp45I GTSAC 6 cut(s) 172, 515, 679, 754, 832, 863
TspDTI ATGAA 3 cut(s) 36, 382, 896
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 2 cut(s) 613, 688
Vha464I CTTAAG 1 cut(s) 587
VpaK11BI GGWCC 4 cut(s) 273, 291, 474, 583
XapI RAATTY 3 cut(s) 424, 502, 658
XceI RCATGY 2 cut(s) 189, 948
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XspI CTAG 4 cut(s) 26, 242, 311, 935
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.