Rmu_sc0001639.1_g000026

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001639.1
OG0000358
Physical Location & Seq
Forward (+)
114843 .. 115937
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001639.1_g000026.1.cds

Sequence Viewer

Length: 1095 bp
atggatgccctatgtaaccatgaactagacctaatcttgaactgggttaaggacccagacgatagaaaatcattctctcaggtcagtaagcgattgtgggcagtggagcgtctgaaccgatcatccattcgccttctcgaactcattcgtctccctcgattacttgatagatttccaaacttggtcacattccaaacatccctgcctctaagcgacgctgacctcgaattattagcccaaagatgtcccaaactagaggtcatcgaccttggaataccggcattgtcctacagaaaagttgggacccaaggtctatgcacactagcagataggtgtcccaagttatccaaggttttacttcgtgggatgtgtatgatgagtgatgcgcatgatggaattgtgtcgttcatacctttagcggataacttgaagcacttggatttgggatacattatgttcgtttctgacaaaacccttgaagcaattgggtcctcaagttgtccgattaccgttttgaacttggaaagctgtcatattacggattgtggattgagatttttgacaaatgggtcttgctcaaaaaccataaaggaattggtccttgcaaagtgtcatggaatcactgattctggggtctcgctcttgcagaagatgtgtgccttggaggagctaaatttggctgattgtcgcgaagtcactgacgttggaggtgtggcaatctccgcaattcgaaccctcaagaaactggactttgctaggggacccaaagtgacagcttgggaacccgcttggggacccagagtgacagaccgcaccattcttgctctcgccgagaattgcctcaacttggaaatacttgatttgagtggtaataaattcgtgaccggagttggtattcgtgcatttttgggtcacaagtgcttacaatcccttgatctacgctatattcgggtttatgttagtggatctgatttggaagacctagcgcttgcatgcccgtcattgaagtctatactagtagagggtggatggagaaaaagattgttgggtgaaatgcaagagagcactgttagcagattcgtgaggttcaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

364

Amino Acids

40.37

Weight (kDa)

7.87

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 568
Acc16I TGCGCA 1 cut(s) 387
AccII CGCG 1 cut(s) 690
AciI CCGC 4 cut(s) 419, 723, 786, 811
AclWI GGATC 1 cut(s) 973
AcsI RAATTY 2 cut(s) 673, 875
AfeI AGCGCT 1 cut(s) 987
AfiI CCNNNNNNNGG 2 cut(s) 791, 847
AgsI TTSAA 6 cut(s) 40, 430, 479, 517, 1006, 1090
AhdI GACNNNNNGTC 1 cut(s) 309
AhlI ACTAGT 1 cut(s) 1015
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 3 cut(s) 528, 670, 776
AluI AGCT 3 cut(s) 528, 670, 776
Alw21I GWGCWC 1 cut(s) 1067
Alw26I GTCTC 2 cut(s) 155, 640
AlwI GGATC 1 cut(s) 973
Aor51HI AGCGCT 1 cut(s) 987
ApoI RAATTY 2 cut(s) 673, 875
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 388, 988
AspS9I GGNCC 6 cut(s) 52, 303, 489, 598, 761, 794
AsuHPI GGTGA 1 cut(s) 1061
AsuII TTCGAA 1 cut(s) 730
AvaII GGWCC 6 cut(s) 52, 303, 489, 598, 761, 794
BbsI GAAGAC 1 cut(s) 984
Bbv12I GWGCWC 1 cut(s) 1067
BccI CCATC 2 cut(s) 386, 1023
BciVI GTATCC 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 155, 640
BcuI ACTAGT 1 cut(s) 1015
BfaI CTAG 6 cut(s) 26, 254, 323, 756, 983, 1016
BfmI CTRYAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 989
BfuI GTATCC 1 cut(s) 440
Bme18I GGWCC 6 cut(s) 52, 303, 489, 598, 761, 794
BmeRI GACNNNNNGTC 1 cut(s) 309
BmgT120I GGNCC 6 cut(s) 52, 303, 489, 598, 761, 794
BmiI GGNNCC 9 cut(s) 54, 304, 305, 490, 762, 763, 783, 795, 796
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 984
Bpu14I TTCGAA 1 cut(s) 730
BpuEI CTTGAG 2 cut(s) 478, 722
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 4 cut(s) 268, 307, 348, 660
BsaWI WCCGGW 1 cut(s) 884
Bsc4I CCNNNNNNNGG 2 cut(s) 791, 847
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 47, 750
BseDI CCNNGG 4 cut(s) 268, 307, 348, 660
BseGI GGATG 5 cut(s) 10, 122, 197, 372, 1034
BseLI CCNNNNNNNGG 2 cut(s) 791, 847
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 47, 750
BseRI GAGGAG 1 cut(s) 680
Bsh1236I CGCG 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 1067
BsiSI CCGG 2 cut(s) 278, 885
BslFI GGGAC 5 cut(s) 231, 316, 321, 774, 807
BslI CCNNNNNNNGG 2 cut(s) 791, 847
BsmAI GTCTC 2 cut(s) 155, 640
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 5 cut(s) 231, 316, 321, 774, 807
Bso31I GGTCTC 1 cut(s) 640
Bsp119I TTCGAA 1 cut(s) 730
Bsp1286I GDGCHC 1 cut(s) 1067
Bsp143I GATC 3 cut(s) 119, 934, 965
Bsp68I TCGCGA 1 cut(s) 690
BspACI CCGC 4 cut(s) 419, 723, 786, 811
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 1 cut(s) 690
BspLI GGNNCC 9 cut(s) 54, 304, 305, 490, 762, 763, 783, 795, 796
BspPI GGATC 1 cut(s) 973
BspT104I TTCGAA 1 cut(s) 730
BspTNI GGTCTC 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 47, 750
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 4 cut(s) 268, 307, 348, 660
BssMI GATC 3 cut(s) 119, 934, 965
BssT1I CCWWGG 4 cut(s) 268, 307, 348, 660
Bst4CI ACNGT 2 cut(s) 511, 1069
BstBI TTCGAA 1 cut(s) 730
BstC8I GCNNGC 2 cut(s) 990, 994
BstDEI CTNAG 2 cut(s) 78, 209
BstF5I GGATG 5 cut(s) 10, 122, 197, 372, 1034
BstFNI CGCG 1 cut(s) 690
BstH2I RGCGCY 1 cut(s) 989
BstHHI GCGC 2 cut(s) 388, 988
BstKTI GATC 3 cut(s) 122, 937, 968
BstMAI GTCTC 2 cut(s) 155, 640
BstMBI GATC 3 cut(s) 119, 934, 965
BstMWI GCNNNNNNNGC 2 cut(s) 722, 1071
BstNSI RCATGY 1 cut(s) 996
BstSFI CTRYAG 1 cut(s) 289
BstUI CGCG 1 cut(s) 690
BstV2I GAAGAC 1 cut(s) 984
BstX2I RGATCY 1 cut(s) 965
BstYI RGATCY 1 cut(s) 965
BsuI GTATCC 1 cut(s) 440
BtsCI GGATG 5 cut(s) 10, 122, 197, 372, 1034
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 4 cut(s) 108, 621, 696, 1065
BtuMI TCGCGA 1 cut(s) 690
Cac8I GCNNGC 2 cut(s) 990, 994
CfoI GCGC 2 cut(s) 388, 988
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 6 cut(s) 52, 303, 489, 598, 761, 794
CseI GACGC 2 cut(s) 98, 224
CviAII CATG 4 cut(s) 20, 389, 614, 993
CviJI RGCY 5 cut(s) 236, 528, 670, 680, 776
CviKI_1 RGCY 5 cut(s) 236, 528, 670, 680, 776
DdeI CTNAG 2 cut(s) 78, 209
DpnI GATC 3 cut(s) 121, 936, 967
DpnII GATC 3 cut(s) 119, 934, 965
DrdI GACNNNNNNGTC 1 cut(s) 568
DriI GACNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 568
Eam1105I GACNNNNNGTC 1 cut(s) 309
Eco130I CCWWGG 4 cut(s) 268, 307, 348, 660
Eco31I GGTCTC 1 cut(s) 640
Eco47I GGWCC 6 cut(s) 52, 303, 489, 598, 761, 794
Eco47III AGCGCT 1 cut(s) 987
EcoO109I RGGNCCY 5 cut(s) 52, 303, 489, 761, 794
EcoT14I CCWWGG 4 cut(s) 268, 307, 348, 660
ErhI CCWWGG 4 cut(s) 268, 307, 348, 660
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 4 cut(s) 23, 392, 617, 996
FaqI GGGAC 5 cut(s) 231, 316, 321, 774, 807
FatI CATG 4 cut(s) 19, 388, 613, 992
FauI CCCGC 1 cut(s) 793
FokI GGATG 5 cut(s) 17, 109, 184, 379, 1041
FspAI RTGCGCAY 1 cut(s) 387
FspBI CTAG 6 cut(s) 26, 254, 323, 756, 983, 1016
FspI TGCGCA 1 cut(s) 387
GlaI GCGC 2 cut(s) 387, 987
HaeII RGCGCY 1 cut(s) 989
HapII CCGG 2 cut(s) 278, 885
HgaI GACGC 2 cut(s) 98, 224
HhaI GCGC 2 cut(s) 388, 988
Hin1II CATG 4 cut(s) 23, 392, 617, 996
Hin6I GCGC 2 cut(s) 386, 986
HinP1I GCGC 2 cut(s) 386, 986
HinfI GANTC 3 cut(s) 618, 626, 1077
HpaII CCGG 2 cut(s) 278, 885
HphI GGTGA 1 cut(s) 1061
Hpy188I TCNGA 4 cut(s) 114, 466, 504, 970
Hpy188III TCNNGA 6 cut(s) 37, 137, 689, 739, 880, 1081
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 511, 1069
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 6 cut(s) 318, 605, 646, 902, 992, 1057
HpyF10VI GCNNNNNNNGC 2 cut(s) 722, 1071
HpyF3I CTNAG 2 cut(s) 78, 209
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 4 cut(s) 23, 392, 617, 996
HspAI GCGC 2 cut(s) 386, 986
KflI GGGWCCC 3 cut(s) 303, 761, 794
Kzo9I GATC 3 cut(s) 119, 934, 965
LmnI GCTCC 2 cut(s) 106, 667
LpnPI CCDG 9 cut(s) 28, 65, 69, 215, 291, 615, 731, 811, 898
LweI GCATC 1 cut(s) 373
MaeI CTAG 6 cut(s) 26, 254, 323, 756, 983, 1016
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 7 cut(s) 14, 184, 694, 769, 802, 880, 911
MalI GATC 3 cut(s) 121, 936, 967
MboI GATC 3 cut(s) 119, 934, 965
MboII GAAGA 2 cut(s) 661, 989
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 965
MhlI GDGCHC 1 cut(s) 1067
MluCI AATT 9 cut(s) 227, 396, 483, 593, 673, 726, 835, 875, 1090
MmeI TCCRAC 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 1 cut(s) 48
MspI CCGG 2 cut(s) 278, 885
MunI CAATTG 1 cut(s) 483
MvnI CGCG 1 cut(s) 690
MwoI GCNNNNNNNGC 2 cut(s) 722, 1071
NdeII GATC 3 cut(s) 119, 934, 965
NlaIII CATG 4 cut(s) 23, 392, 617, 996
NlaIV GGNNCC 9 cut(s) 54, 304, 305, 490, 762, 763, 783, 795, 796
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 6 cut(s) 184, 694, 769, 802, 880, 911
NruI TCGCGA 1 cut(s) 690
NsbI TGCGCA 1 cut(s) 387
NspI RCATGY 1 cut(s) 996
NspV TTCGAA 1 cut(s) 730
PaeI GCATGC 1 cut(s) 996
PcsI WCGNNNNNNNCGW 2 cut(s) 154, 222
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 618, 626, 1077
PpuMI RGGWCCY 5 cut(s) 52, 303, 489, 761, 794
Psp5II RGGWCCY 5 cut(s) 52, 303, 489, 761, 794
PspN4I GGNNCC 9 cut(s) 54, 304, 305, 490, 762, 763, 783, 795, 796
PspPI GGNCC 6 cut(s) 52, 303, 489, 598, 761, 794
PspPPI RGGWCCY 5 cut(s) 52, 303, 489, 761, 794
PsuI RGATCY 1 cut(s) 965
RruI TCGCGA 1 cut(s) 690
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 3 cut(s) 119, 934, 965
Sau96I GGNCC 6 cut(s) 52, 303, 489, 598, 761, 794
SduI GDGCHC 1 cut(s) 1067
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 730
SinI GGWCC 6 cut(s) 52, 303, 489, 598, 761, 794
SmlI CTYRAG 2 cut(s) 493, 737
SmoI CTYRAG 2 cut(s) 493, 737
SpeI ACTAGT 1 cut(s) 1015
SphI GCATGC 1 cut(s) 996
Sse9I AATT 9 cut(s) 227, 396, 483, 593, 673, 726, 835, 875, 1090
SsiI CCGC 4 cut(s) 419, 723, 786, 811
SspMI CTAG 6 cut(s) 26, 254, 323, 756, 983, 1016
StyI CCWWGG 4 cut(s) 268, 307, 348, 660
TaaI ACNGT 2 cut(s) 511, 1069
TaiI ACGT 1 cut(s) 705
TaqI TCGA 5 cut(s) 138, 157, 225, 264, 730
TasI AATT 9 cut(s) 227, 396, 483, 593, 673, 726, 835, 875, 1090
TfiI GAWTC 3 cut(s) 618, 626, 1077
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 4 cut(s) 108, 628, 703, 1072
TseFI GTSAC 6 cut(s) 184, 694, 769, 802, 880, 911
Tsp45I GTSAC 6 cut(s) 184, 694, 769, 802, 880, 911
TspDTI ATGAA 2 cut(s) 36, 397
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 4 cut(s) 108, 628, 703, 1072
VpaK11BI GGWCC 6 cut(s) 52, 303, 489, 598, 761, 794
XapI RAATTY 2 cut(s) 673, 875
XceI RCATGY 1 cut(s) 996
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 6 cut(s) 26, 254, 323, 756, 983, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.