FvH4_2g32600

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Forward (+)
24673912 .. 24675081
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32600.t1

Sequence Viewer

Length: 891 bp
ATGGTGGAGATTTCTGAATTGCATGACGATCTATTAGGTCAGATCCTGGAAAGGGTAAGCGAGCCCGGTGATCGGAAACAGGTTCTCCAAGTCTGCAAACAATGGTTCACACTGGAGGGTCCAACAAGAAGGTCACTCACTTTATACGAATTCAGTCGTCTCCGTCAGGCCATCGATCTCAGCGCCGAACAATTCGAATCAATGTTTTTACCGGAGAACGGTCTTTACGGTCTGTCAAGTGGTGGCGGCCTTCCGAAACTGTCCAAGGTTTCGGTCAGAGGGAGATGGTGTGTAGCCACCGACAGATGGATACATAGGTTTCCTAATTTGACATATTTGGATTTGGGAGAGTGCGGTCAGGTCGATGATGACTATGCGGTTGAGATCGATGACGATGCGTTAGAAGCAATTGCGCTTTCCGAGATTTCGGACACTGGTTTGAGATTGTTGGCACATGGAAGGTGTTCAAAAACCCTCAACACATTGGTGCTGGCTTACTGCAAGGGTATAACTGATTCCGGGGTCTCACATTTGCAGAATATGCAATGCTTGGAAGAGCTGGTTTTGGAAAGCTGCGGGTTGAAGAATGTGTCAGACCAAAGCCTGTTTTTTGTTGTTGAGAATTGCCCCAACTTAGAGTTTCTTGATTTAAGTTGTTGTCGTGTAACTGGTGCCGGAATTTGTGCACTTTCCAGTCACAGGTTCCTAGAGTCTCTTGTTTTGCGCAGGTGGTTTGTTTATTATTGGGAAGATGTGGAGCACTTGTTGCTTGAATGCAAGTCACTCAAGTCTATCGAACTAAGTTGGCAGTTTACGTGCTCATTTGCTCCGGAAAGCCTTAGCAGAATTGTGACGTTGTATGATGACTGGAAAGTGTTTAGTTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

297

Amino Acids

33.56

Weight (kDa)

4.77

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 6 - 44 3.7e-07 F-box
DUF7885 PF25372 109 - 247 2.1e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 717
Acc16I TGCGCA 1 cut(s) 725
Acc36I ACCTGC 1 cut(s) 717
AccB1I GGYRCC 1 cut(s) 671
AccIII TCCGGA 1 cut(s) 829
AciI CCGC 4 cut(s) 246, 354, 377, 576
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 2 cut(s) 149, 678
AfiI CCNNNNNNNGG 5 cut(s) 52, 72, 218, 306, 699
AgsI TTSAA 3 cut(s) 468, 583, 773
AjnI CCWGG 1 cut(s) 45
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 2 cut(s) 559, 573
AluI AGCT 2 cut(s) 559, 573
Alw21I GWGCWC 3 cut(s) 688, 762, 821
Alw26I GTCTC 3 cut(s) 164, 529, 717
Alw44I GTGCAC 1 cut(s) 684
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 829
AoxI GGCC 2 cut(s) 168, 247
ApaLI GTGCAC 1 cut(s) 684
ApeKI GCWGC 1 cut(s) 573
ApoI RAATTY 2 cut(s) 149, 678
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 3 cut(s) 185, 415, 726
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 2 cut(s) 66, 520
AsuHPI GGTGA 1 cut(s) 80
AsuII TTCGAA 1 cut(s) 195
AvaII GGWCC 1 cut(s) 119
BaeGI GKGCMC 1 cut(s) 688
BaeI ACNNNNGTAYC 2 cut(s) 302, 335
BanI GGYRCC 1 cut(s) 671
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 3 cut(s) 688, 762, 821
BbvI GCAGC 1 cut(s) 560
BccI CCATC 3 cut(s) 179, 279, 300
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 303
BcnI CCSGG 2 cut(s) 66, 520
BcoDI GTCTC 3 cut(s) 164, 529, 717
BfaI CTAG 1 cut(s) 707
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 717
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 2 cut(s) 247, 574
BlsI GCNGC 2 cut(s) 248, 575
Bme1390I CCNGG 3 cut(s) 47, 66, 520
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 3 cut(s) 120, 673, 704
BmrFI CCNGG 3 cut(s) 47, 66, 520
BmsI GCATC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 839
Bpu14I TTCGAA 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 2 cut(s) 66, 520
Bsa29I ATCGAT 2 cut(s) 174, 387
BsaAI YACGTR 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 2 cut(s) 264, 519
BsaWI WCCGGW 2 cut(s) 211, 829
BsaXI ACNNNNNCTCC 6 cut(s) 69, 99, 274, 304, 749, 779
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 72, 218, 306, 699
Bse1I ACTGG 5 cut(s) 117, 439, 673, 693, 872
Bse3DI GCAATG 1 cut(s) 551
BseAI TCCGGA 1 cut(s) 829
BseBI CCWGG 1 cut(s) 47
BseCI ATCGAT 2 cut(s) 174, 387
BseDI CCNNGG 2 cut(s) 264, 519
BseLI CCNNNNNNNGG 5 cut(s) 52, 72, 218, 306, 699
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 5 cut(s) 117, 439, 673, 693, 872
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 1 cut(s) 560
BshFI GGCC 2 cut(s) 170, 249
BshNI GGYRCC 1 cut(s) 671
BshVI ATCGAT 2 cut(s) 174, 387
BsiHKAI GWGCWC 3 cut(s) 688, 762, 821
BsiSI CCGG 5 cut(s) 66, 212, 519, 675, 830
BslI CCNNNNNNNGG 5 cut(s) 52, 72, 218, 306, 699
BsmAI GTCTC 3 cut(s) 164, 529, 717
BsmBI CGTCTC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 779
BsnI GGCC 2 cut(s) 170, 249
Bso31I GGTCTC 1 cut(s) 529
Bsp119I TTCGAA 1 cut(s) 195
Bsp1286I GDGCHC 4 cut(s) 66, 688, 762, 821
Bsp13I TCCGGA 1 cut(s) 829
Bsp143I GATC 5 cut(s) 28, 42, 70, 175, 384
BspACI CCGC 4 cut(s) 246, 354, 377, 576
BspANI GGCC 2 cut(s) 170, 249
BspCNI CTCAG 1 cut(s) 192
BspDI ATCGAT 2 cut(s) 174, 387
BspEI TCCGGA 1 cut(s) 829
BspLI GGNNCC 3 cut(s) 120, 673, 704
BspMI ACCTGC 1 cut(s) 717
BspPI GGATC 1 cut(s) 37
BspQI GCTCTTC 1 cut(s) 549
BspT104I TTCGAA 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 671
BspTNI GGTCTC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 5 cut(s) 117, 439, 673, 693, 872
BssECI CCNNGG 2 cut(s) 264, 519
BssMI GATC 5 cut(s) 28, 42, 70, 175, 384
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 3 cut(s) 221, 230, 261
Bst6I CTCTTC 1 cut(s) 549
BstAPI GCANNNNNTGC 2 cut(s) 541, 766
BstBAI YACGTR 1 cut(s) 816
BstBI TTCGAA 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 62, 492
BstDEI CTNAG 4 cut(s) 179, 634, 800, 839
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 3 cut(s) 185, 415, 726
BstKTI GATC 5 cut(s) 31, 45, 73, 178, 387
BstMAI GTCTC 3 cut(s) 164, 529, 717
BstMBI GATC 5 cut(s) 28, 42, 70, 175, 384
BstMWI GCNNNNNNNGC 3 cut(s) 404, 541, 766
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 45, 64, 518
BstSLI GKGCMC 1 cut(s) 688
BstV1I GCAGC 1 cut(s) 560
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
Bsu15I ATCGAT 2 cut(s) 174, 387
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 170, 249
BsuTUI ATCGAT 2 cut(s) 174, 387
BtsIMutI CAGTG 2 cut(s) 110, 432
BveI ACCTGC 1 cut(s) 717
Cac8I GCNNGC 2 cut(s) 62, 492
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 3 cut(s) 185, 415, 726
Cfr13I GGNCC 1 cut(s) 119
ClaI ATCGAT 2 cut(s) 174, 387
CviAII CATG 2 cut(s) 23, 455
CviJI RGCY 9 cut(s) 64, 170, 249, 296, 494, 559, 573, 603, 837
CviKI_1 RGCY 9 cut(s) 64, 170, 249, 296, 494, 559, 573, 603, 837
DdeI CTNAG 4 cut(s) 179, 634, 800, 839
DpnI GATC 5 cut(s) 30, 44, 72, 177, 386
DpnII GATC 5 cut(s) 28, 42, 70, 175, 384
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 2 cut(s) 26, 458
FaiI YATR 9 cut(s) 24, 145, 315, 334, 375, 456, 509, 542, 861
FatI CATG 2 cut(s) 22, 454
FauI CCCGC 1 cut(s) 569
Fnu4HI GCNGC 2 cut(s) 247, 574
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 247, 574
FspBI CTAG 1 cut(s) 707
FspI TGCGCA 1 cut(s) 725
GlaI GCGC 3 cut(s) 184, 414, 725
GluI GCNGC 2 cut(s) 247, 574
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 2 cut(s) 170, 249
HapII CCGG 5 cut(s) 66, 212, 519, 675, 830
HhaI GCGC 3 cut(s) 185, 415, 726
Hin1II CATG 2 cut(s) 26, 458
Hin6I GCGC 3 cut(s) 183, 413, 724
HinP1I GCGC 3 cut(s) 183, 413, 724
HinfI GANTC 3 cut(s) 197, 515, 710
HpaII CCGG 5 cut(s) 66, 212, 519, 675, 830
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 108, 686, 813
Hpy188I TCNGA 9 cut(s) 16, 42, 75, 255, 278, 421, 430, 595, 886
Hpy188III TCNNGA 2 cut(s) 644, 830
Hpy8I GTNNAC 3 cut(s) 108, 686, 813
HpyAV CCTTC 3 cut(s) 123, 260, 453
HpyCH4III ACNGT 3 cut(s) 221, 230, 261
HpyCH4IV ACGT 2 cut(s) 815, 854
HpyCH4V TGCA 7 cut(s) 22, 96, 501, 535, 544, 686, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 541, 766
HpyF3I CTNAG 4 cut(s) 179, 634, 800, 839
HpySE526I ACGT 2 cut(s) 815, 854
Hsp92II CATG 2 cut(s) 26, 458
HspAI GCGC 3 cut(s) 183, 413, 724
Kpn2I TCCGGA 1 cut(s) 829
Kzo9I GATC 5 cut(s) 28, 42, 70, 175, 384
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 2 cut(s) 757, 832
Lsp1109I GCAGC 1 cut(s) 560
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 707
MaeII ACGT 2 cut(s) 815, 854
MaeIII GTNAC 5 cut(s) 132, 664, 695, 780, 850
MalI GATC 5 cut(s) 30, 44, 72, 177, 386
MboI GATC 5 cut(s) 28, 42, 70, 175, 384
MboII GAAGA 3 cut(s) 566, 595, 761
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 4 cut(s) 66, 688, 762, 821
MluCI AATT 8 cut(s) 17, 149, 191, 325, 408, 622, 678, 846
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 3 cut(s) 109, 272, 485
MroI TCCGGA 1 cut(s) 829
MroXI GAANNNNTTC 1 cut(s) 463
MseI TTAA 2 cut(s) 650, 889
MslI CAYNNNNRTG 1 cut(s) 485
MspI CCGG 5 cut(s) 66, 212, 519, 675, 830
MspR9I CCNGG 3 cut(s) 47, 66, 520
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 779
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 404, 541, 766
NciI CCSGG 2 cut(s) 66, 520
NdeII GATC 5 cut(s) 28, 42, 70, 175, 384
NlaIII CATG 2 cut(s) 26, 458
NlaIV GGNNCC 3 cut(s) 120, 673, 704
NmuCI GTSAC 4 cut(s) 132, 695, 780, 850
NsbI TGCGCA 1 cut(s) 725
NspV TTCGAA 1 cut(s) 195
OliI CACNNNNGTG 1 cut(s) 485
PaqCI CACCTGC 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 549
PctI GAATGC 1 cut(s) 779
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 197, 515
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 2 cut(s) 248, 575
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
Ppu21I YACGTR 1 cut(s) 816
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 3 cut(s) 120, 673, 704
PspPI GGNCC 1 cut(s) 119
PsrI GAACNNNNNNTAC 2 cut(s) 209, 241
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 485
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 2 cut(s) 650, 889
SatI GCNGC 2 cut(s) 247, 574
Sau3AI GATC 5 cut(s) 28, 42, 70, 175, 384
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 3 cut(s) 47, 66, 520
SduI GDGCHC 4 cut(s) 66, 688, 762, 821
SfaNI GCATC 1 cut(s) 385
SfuI TTCGAA 1 cut(s) 195
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
Sse9I AATT 8 cut(s) 17, 149, 191, 325, 408, 622, 678, 846
SsiI CCGC 4 cut(s) 246, 354, 377, 576
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 3 cut(s) 45, 64, 518
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 3 cut(s) 221, 230, 261
TaiI ACGT 2 cut(s) 818, 857
TaqI TCGA 5 cut(s) 174, 195, 363, 387, 795
TaqII GACCGA 1 cut(s) 262
TasI AATT 8 cut(s) 17, 149, 191, 325, 408, 622, 678, 846
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 2 cut(s) 197, 515
Tru1I TTAA 2 cut(s) 650, 889
Tru9I TTAA 2 cut(s) 650, 889
TscAI CASTG 2 cut(s) 117, 439
TseFI GTSAC 4 cut(s) 132, 695, 780, 850
TseI GCWGC 1 cut(s) 573
Tsp45I GTSAC 4 cut(s) 132, 695, 780, 850
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 117, 439
VneI GTGCAC 1 cut(s) 684
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 2 cut(s) 149, 678
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.