Rorug02G0461000

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000345
Physical Location & Seq
Reverse (-)
59267771 .. 59272261
4491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0461000.1

Sequence Viewer

Length: 1284 bp
ATGGATTTCTTCAAAGTTAAGAAGTTTAGAAAAGCTCACAAACCAGACCCAGAAAATGAGTTAGAGGACAATCCTGTGCCAGAGGAACCAAAGGAGAATGGTGGTGATGAAAAAGGCAAGGCCGTTAATGTTGATCCTATAGCTGAAGCTGACGATGACGATGATGATTTCATAACAGAGGAAGTCAAGAGAAGGTTAAAAGAATTGCGAAGGAATAGTTTTATGGTATTGATCCCGGAAGAAGAGTCATGTGCTGAAGAGGAGGAGGAAGAAGAAGAGCAGGGAGAGACGAGCTCCAATGAGTGGAGGGATGTAGAAGCTGAGGGTCGGCAATGGTGGTGTGGCTTTGGTGCTGTATATGACAAATACTGTGAGAGGATGTTGTTCTTTGAACGGATGAGCACACAGCAGCTTAAGGAAGGTTGTCTGACAGGCATCCAAACCCCTACAACTCCATCACCAAGATCTGCATCTAAGAAGCTTTCCTCTCCTTTTCGCTGTCTCTCTTTGAAGAAGATTGAAGAACCTAATGACGAGACTGAGCATCTCCAGCAGCCAGAGATGGACCCTTATCATGATATTGAGACATCATATGTAGCTCAAGTTTGCTTGTCTTGGGAGGCACTGCACTGTCAATACACTCAACTGAATCAGCTAATCTCATGCCAACCTGAAAATCCCACCTCCTACAACCACAGTGCTCAACAGTTTCAACAATTTCAGGTTTTATTACAAAGGTTTATTGAAAATGAACCTTTTGAGGAGGGTCTCAGGCCAGAAATTTATGCTCGCACGCAGAGAGTTCTGCCTAAACTACTCCGGGTCCCTAATATACAAGGTCCAATTAATAAAGGGAAAGAAGAAGAAGAGTCAGATTCCATGATTCTTGCCCCTGATCTGATCAAGATTATTGAAACCTCAATCCTCACATTTCTACTTTTCCTGAAGATGGATAAGAAAAAAACAAGCGCTGGTCTTAGCTTATTTGGAAATCAAAACCATGCTACCCCACTTCAGCAGATTCAAACTTCACTGGATAAGAAATGGATGAAATTAAAGGAACTTCGTAAAAAGAGGAAAAGTTGGAAGAAGTCATGGCCGCAATCACAAGAAGATGTTCAGCTGTTGTTTAGCCTCACTGATGCAAAGGTTTTGTCAAGGGTTCTCCGGATGGGAAGAATTAGTAAAGAGCAGCTATTTTGGTGCGAGGAAAAGATGAAAAAGCTAGATTTGGTGGATGGCAAGTTGTGGAGAGACCCCTCTCCCACCCTTTTCCCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

427

Amino Acids

49.83

Weight (kDa)

5.14

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1666 PF07891 192 - 426 2.1e-89 Protein of unknown function (DUF1666)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 303
AccIII TCCGGA 1 cut(s) 1167
AciI CCGC 1 cut(s) 1100
AclWI GGATC 2 cut(s) 128, 226
AcoI YGGCCR 1 cut(s) 1097
AcsI RAATTY 1 cut(s) 780
AcuI CTGAAG 4 cut(s) 165, 276, 965, 998
AfeI AGCGCT 1 cut(s) 970
AfiI CCNNNNNNNGG 2 cut(s) 303, 949
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 8 cut(s) 13, 392, 511, 521, 713, 746, 914, 1025
Alw21I GWGCWC 3 cut(s) 296, 404, 703
Alw26I GTCTC 6 cut(s) 281, 506, 530, 578, 773, 1248
AlwI GGATC 2 cut(s) 128, 226
Aor13HI TCCGGA 1 cut(s) 1167
Aor51HI AGCGCT 1 cut(s) 970
AoxI GGCC 3 cut(s) 120, 773, 1097
ApeKI GCWGC 3 cut(s) 409, 553, 1192
ApoI RAATTY 1 cut(s) 780
ArsI GACNNNNNNTTYG 2 cut(s) 1139, 1171
AseI ATTAAT 1 cut(s) 846
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 1 cut(s) 971
AspS9I GGNCC 3 cut(s) 565, 823, 839
AsuC2I CCSGG 2 cut(s) 236, 821
AsuHPI GGTGA 2 cut(s) 116, 450
AvaII GGWCC 3 cut(s) 565, 823, 839
BanII GRGCYC 1 cut(s) 296
Bbv12I GWGCWC 3 cut(s) 296, 404, 703
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 421, 565, 1204
BccI CCATC 5 cut(s) 463, 556, 943, 1165, 1232
BceAI ACGGC 1 cut(s) 107
BclI TGATCA 1 cut(s) 900
BcnI CCSGG 2 cut(s) 236, 821
BcoDI GTCTC 6 cut(s) 281, 506, 530, 578, 773, 1248
BfaI CTAG 1 cut(s) 1226
BfmI CTRYAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 972
BfrI CTTAAG 1 cut(s) 413
BglII AGATCT 1 cut(s) 464
BisI GCNGC 4 cut(s) 410, 554, 1100, 1193
BlsI GCNGC 4 cut(s) 411, 555, 1101, 1194
Bme1390I CCNGG 2 cut(s) 236, 821
Bme18I GGWCC 3 cut(s) 565, 823, 839
BmgT120I GGNCC 3 cut(s) 565, 823, 839
BmiI GGNNCC 4 cut(s) 87, 567, 824, 825
BmrFI CCNGG 2 cut(s) 236, 821
BmsI GCATC 4 cut(s) 444, 479, 553, 1132
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BpmI CTGGAG 1 cut(s) 533
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 585
BpuMI CCSGG 2 cut(s) 236, 821
BsaBI GATNNNNATC 1 cut(s) 469
BsaI GGTCTC 2 cut(s) 773, 1248
BsaWI WCCGGW 1 cut(s) 1167
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 949
Bse1I ACTGG 1 cut(s) 1038
Bse3DI GCAATG 1 cut(s) 338
Bse8I GATNNNNATC 1 cut(s) 469
BseAI TCCGGA 1 cut(s) 1167
BseGI GGATG 7 cut(s) 316, 384, 402, 435, 1053, 1176, 1243
BseJI GATNNNNATC 1 cut(s) 469
BseLI CCNNNNNNNGG 2 cut(s) 303, 949
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 3 cut(s) 312, 531, 784
BseNI ACTGG 1 cut(s) 1038
BseRI GAGGAG 3 cut(s) 275, 278, 776
BseXI GCAGC 3 cut(s) 421, 565, 1204
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 3 cut(s) 122, 775, 1099
BsiHKAI GWGCWC 3 cut(s) 296, 404, 703
BsiSI CCGG 3 cut(s) 236, 820, 1168
BslFI GGGAC 1 cut(s) 809
BslI CCNNNNNNNGG 2 cut(s) 303, 949
BsmAI GTCTC 6 cut(s) 281, 506, 530, 578, 773, 1248
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 809
BsnI GGCC 3 cut(s) 122, 775, 1099
Bso31I GGTCTC 2 cut(s) 773, 1248
Bsp1286I GDGCHC 3 cut(s) 296, 404, 703
Bsp13I TCCGGA 1 cut(s) 1167
Bsp143I GATC 5 cut(s) 133, 231, 464, 895, 900
BspACI CCGC 1 cut(s) 1100
BspANI GGCC 3 cut(s) 122, 775, 1099
BspCNI CTCAG 3 cut(s) 313, 532, 783
BspEI TCCGGA 1 cut(s) 1167
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 4 cut(s) 87, 567, 824, 825
BspPI GGATC 2 cut(s) 128, 226
BspQI GCTCTTC 1 cut(s) 270
BspTI CTTAAG 1 cut(s) 413
BspTNI GGTCTC 2 cut(s) 773, 1248
BsrDI GCAATG 1 cut(s) 338
BsrI ACTGG 1 cut(s) 1038
BssMI GATC 5 cut(s) 133, 231, 464, 895, 900
Bst4CI ACNGT 4 cut(s) 371, 632, 698, 708
Bst6I CTCTTC 4 cut(s) 237, 252, 270, 861
BstAFI CTTAAG 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 790, 794
BstDEI CTNAG 5 cut(s) 321, 474, 540, 770, 977
BstF5I GGATG 7 cut(s) 316, 384, 402, 435, 1053, 1176, 1243
BstH2I RGCGCY 1 cut(s) 972
BstHHI GCGC 1 cut(s) 971
BstKTI GATC 5 cut(s) 136, 234, 467, 898, 903
BstMAI GTCTC 6 cut(s) 281, 506, 530, 578, 773, 1248
BstMBI GATC 5 cut(s) 133, 231, 464, 895, 900
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstSCI CCNGG 2 cut(s) 234, 819
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 421, 565, 1204
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 3 cut(s) 122, 775, 1099
BtsCI GGATG 7 cut(s) 316, 384, 402, 435, 1053, 1176, 1243
BtsI GCAGTG 1 cut(s) 623
BtsIMutI CAGTG 5 cut(s) 623, 628, 703, 1031, 1137
Cac8I GCNNGC 2 cut(s) 790, 794
CciI TCATGA 1 cut(s) 574
CfoI GCGC 1 cut(s) 971
Cfr13I GGNCC 3 cut(s) 565, 823, 839
CviAII CATG 6 cut(s) 249, 575, 663, 880, 1001, 1095
DdeI CTNAG 5 cut(s) 321, 474, 540, 770, 977
DpnI GATC 5 cut(s) 135, 233, 466, 897, 902
DpnII GATC 5 cut(s) 133, 231, 464, 895, 900
EaeI YGGCCR 1 cut(s) 1097
Eam1104I CTCTTC 4 cut(s) 237, 252, 270, 861
EarI CTCTTC 4 cut(s) 237, 252, 270, 861
Ecl136II GAGCTC 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 296
Eco31I GGTCTC 2 cut(s) 773, 1248
Eco47I GGWCC 3 cut(s) 565, 823, 839
Eco47III AGCGCT 1 cut(s) 970
Eco53kI GAGCTC 1 cut(s) 294
Eco57I CTGAAG 4 cut(s) 165, 276, 965, 998
EcoICRI GAGCTC 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 823
EcoT38I GRGCYC 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 6 cut(s) 252, 578, 666, 883, 1004, 1098
FaqI GGGAC 1 cut(s) 809
FatI CATG 6 cut(s) 248, 574, 662, 879, 1000, 1094
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 900
Fnu4HI GCNGC 4 cut(s) 410, 554, 1100, 1193
FokI GGATG 7 cut(s) 323, 391, 409, 422, 1060, 1183, 1250
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 4 cut(s) 410, 554, 1100, 1193
FspBI CTAG 1 cut(s) 1226
GlaI GCGC 1 cut(s) 970
GluI GCNGC 4 cut(s) 410, 554, 1100, 1193
GsuI CTGGAG 1 cut(s) 533
HaeII RGCGCY 1 cut(s) 972
HaeIII GGCC 3 cut(s) 122, 775, 1099
HapII CCGG 3 cut(s) 236, 820, 1168
HhaI GCGC 1 cut(s) 971
Hin1II CATG 6 cut(s) 252, 578, 666, 883, 1004, 1098
Hin6I GCGC 1 cut(s) 969
HinP1I GCGC 1 cut(s) 969
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 6 cut(s) 245, 649, 869, 875, 883, 1021
HpaII CCGG 3 cut(s) 236, 820, 1168
HphI GGTGA 2 cut(s) 116, 450
Hpy188I TCNGA 3 cut(s) 429, 874, 900
Hpy188III TCNNGA 5 cut(s) 187, 575, 904, 943, 1168
HpyAV CCTTC 3 cut(s) 186, 204, 413
HpyCH4III ACNGT 4 cut(s) 371, 632, 698, 708
HpyCH4V TGCA 3 cut(s) 470, 628, 1145
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
HpyF3I CTNAG 5 cut(s) 321, 474, 540, 770, 977
Hsp92II CATG 6 cut(s) 252, 578, 666, 883, 1004, 1098
HspAI GCGC 1 cut(s) 969
KflI GGGWCCC 1 cut(s) 823
Kpn2I TCCGGA 1 cut(s) 1167
Ksp22I TGATCA 1 cut(s) 900
Kzo9I GATC 5 cut(s) 133, 231, 464, 895, 900
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 299
Lsp1109I GCAGC 3 cut(s) 421, 565, 1204
LweI GCATC 4 cut(s) 444, 479, 553, 1132
MaeI CTAG 1 cut(s) 1226
MalI GATC 5 cut(s) 135, 233, 466, 897, 902
MboI GATC 5 cut(s) 133, 231, 464, 895, 900
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 3 cut(s) 296, 404, 703
MluCI AATT 6 cut(s) 203, 716, 780, 843, 1052, 1179
MlyI GAGTC 2 cut(s) 254, 878
MmeI TCCRAC 1 cut(s) 1064
MroI TCCGGA 1 cut(s) 1167
MroXI GAANNNNTTC 1 cut(s) 1116
MseI TTAA 7 cut(s) 18, 126, 197, 414, 846, 1055, 1282
MspA1I CMGCKG 1 cut(s) 1123
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 3 cut(s) 236, 820, 1168
MspR9I CCNGG 2 cut(s) 236, 821
MwoI GCNNNNNNNGC 1 cut(s) 550
NciI CCSGG 2 cut(s) 236, 821
NdeI CATATG 1 cut(s) 592
NdeII GATC 5 cut(s) 133, 231, 464, 895, 900
NlaIII CATG 6 cut(s) 252, 578, 666, 883, 1004, 1098
NlaIV GGNNCC 4 cut(s) 87, 567, 824, 825
PagI TCATGA 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 4 cut(s) 649, 875, 883, 1021
PflMI CCANNNNNTGG 1 cut(s) 303
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 4 cut(s) 411, 555, 1101, 1194
PleI GAGTC 2 cut(s) 253, 877
PpsI GAGTC 2 cut(s) 253, 877
PpuMI RGGWCCY 1 cut(s) 823
PshBI ATTAAT 1 cut(s) 846
Psp124BI GAGCTC 1 cut(s) 296
Psp5II RGGWCCY 1 cut(s) 823
PspN4I GGNNCC 4 cut(s) 87, 567, 824, 825
PspPI GGNCC 3 cut(s) 565, 823, 839
PspPPI RGGWCCY 1 cut(s) 823
PsuI RGATCY 1 cut(s) 464
PvuII CAGCTG 1 cut(s) 1123
SacI GAGCTC 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 7 cut(s) 18, 126, 197, 414, 846, 1055, 1282
SatI GCNGC 4 cut(s) 410, 554, 1100, 1193
Sau3AI GATC 5 cut(s) 133, 231, 464, 895, 900
Sau96I GGNCC 3 cut(s) 565, 823, 839
SchI GAGTC 2 cut(s) 254, 878
ScrFI CCNGG 2 cut(s) 236, 821
SduI GDGCHC 3 cut(s) 296, 404, 703
SfaNI GCATC 4 cut(s) 444, 479, 553, 1132
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 3 cut(s) 565, 823, 839
SmlI CTYRAG 2 cut(s) 413, 600
SmoI CTYRAG 2 cut(s) 413, 600
Sse9I AATT 6 cut(s) 203, 716, 780, 843, 1052, 1179
SsiI CCGC 1 cut(s) 1100
SspMI CTAG 1 cut(s) 1226
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 234, 819
TaaI ACNGT 4 cut(s) 371, 632, 698, 708
TasI AATT 6 cut(s) 203, 716, 780, 843, 1052, 1179
TauI GCSGC 1 cut(s) 1102
TfiI GAWTC 4 cut(s) 649, 875, 883, 1021
Tru1I TTAA 7 cut(s) 18, 126, 197, 414, 846, 1055, 1282
Tru9I TTAA 7 cut(s) 18, 126, 197, 414, 846, 1055, 1282
TscAI CASTG 5 cut(s) 630, 635, 703, 1038, 1144
TseI GCWGC 3 cut(s) 409, 553, 1192
TspDTI ATGAA 5 cut(s) 123, 160, 765, 1064, 1232
TspGWI ACGGA 1 cut(s) 409
TspRI CASTG 5 cut(s) 630, 635, 703, 1038, 1144
Van91I CCANNNNNTGG 1 cut(s) 303
Vha464I CTTAAG 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 565, 823, 839
VspI ATTAAT 1 cut(s) 846
XapI RAATTY 1 cut(s) 780
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 1 cut(s) 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.