Rw3G026400

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000345
Physical Location & Seq
Forward (+)
36208384 .. 36208803
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026400.1

Sequence Viewer

Length: 420 bp
ATGGATCGCTCATTGGTATCTAAACTGAATATATCGTGGCCGAATGTGAAATATCCGAATAATATCCAGTTTTGGGATAAACAGTGGAGAAAACATGGCTCATGTTCCGTGCACACGTTTAACCAAACAGAGTACTTCACGCAAGCGGATAATCTTTGGAACTCACACAACATTACTGATATTCTTATAACTGGTGGGATCAAGCCAAATGGATCAGAATATGCATACGATACGGTAGGGCGGCCCATCCAAATTGCAACCGGGAAGGTACCCGAACTTCGTTGCGCACCATCCTCCCCTGGAAGGCAATTGTTGCATGAAGTAGTACTTTGTTATAATCATAAGGGAACAACGCCCATCGACTGTAACCCTTTACAGGCAACCTGCGATCGTAAGTCCCTAATAAAGTTTACTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

139

Amino Acids

15.82

Weight (kDa)

8.85

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 4 - 122 6.5e-25 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 188, 336
Acc16I TGCGCA 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 392
Acc65I GGTACC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 268
AciI CCGC 2 cut(s) 146, 241
AclWI GGATC 3 cut(s) 12, 206, 220
AcoI YGGCCR 1 cut(s) 38
AfaI GTAC 3 cut(s) 134, 270, 327
AfiI CCNNNNNNNGG 3 cut(s) 73, 303, 376
AflIII ACRYGT 1 cut(s) 114
AjnI CCWGG 1 cut(s) 298
Alw21I GWGCWC 1 cut(s) 114
Alw44I GTGCAC 1 cut(s) 110
AlwI GGATC 3 cut(s) 12, 206, 220
AoxI GGCC 2 cut(s) 38, 242
ApaLI GTGCAC 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 243
AsuC2I CCSGG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 261, 293
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 3 cut(s) 254, 298, 365
BciT130I CCWGG 1 cut(s) 300
BcnI CCSGG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 1 cut(s) 242
BlsI GCNGC 1 cut(s) 243
BmcAI AGTACT 2 cut(s) 134, 327
Bme1390I CCNGG 2 cut(s) 262, 300
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 262, 300
BpuMI CCSGG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 303, 376
Bse1I ACTGG 2 cut(s) 67, 196
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 246, 290
BseLI CCNNNNNNNGG 3 cut(s) 73, 303, 376
BseNI ACTGG 2 cut(s) 67, 196
BseSI GKGCMC 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 40, 244
BshNI GGYRCC 1 cut(s) 268
BsiEI CGRYCG 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 3 cut(s) 73, 303, 376
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 2 cut(s) 40, 244
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 4 cut(s) 4, 198, 212, 388
BspACI CCGC 2 cut(s) 146, 241
BspANI GGCC 2 cut(s) 40, 244
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 3 cut(s) 12, 206, 220
BspT107I GGYRCC 1 cut(s) 268
BsrI ACTGG 2 cut(s) 67, 196
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 4 cut(s) 4, 198, 212, 388
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 3 cut(s) 84, 235, 365
BstAPI GCANNNNNTGC 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 246, 290
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 4 cut(s) 7, 201, 215, 391
BstMBI GATC 4 cut(s) 4, 198, 212, 388
BstMCI CGRYCG 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 260, 298
BstSLI GKGCMC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 40, 244
BtsCI GGATG 2 cut(s) 246, 290
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 144
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 3 cut(s) 133, 269, 326
CviAII CATG 3 cut(s) 95, 102, 317
CviJI RGCY 4 cut(s) 40, 99, 205, 244
CviKI_1 RGCY 4 cut(s) 40, 99, 205, 244
CviQI GTAC 3 cut(s) 133, 269, 326
DdeI CTNAG 1 cut(s) 414
DpnI GATC 4 cut(s) 6, 200, 214, 390
DpnII GATC 4 cut(s) 4, 198, 212, 388
EaeI YGGCCR 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 226
FaeI CATG 3 cut(s) 98, 105, 320
FaiI YATR 9 cut(s) 32, 96, 103, 188, 222, 226, 318, 336, 342
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 94, 101, 316
Fnu4HI GCNGC 1 cut(s) 242
FokI GGATG 2 cut(s) 233, 277
Fsp4HI GCNGC 1 cut(s) 242
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 242
HaeIII GGCC 2 cut(s) 40, 244
HapII CCGG 1 cut(s) 261
HhaI GCGC 1 cut(s) 287
Hin1II CATG 3 cut(s) 98, 105, 320
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 112, 411
Hpy188I TCNGA 2 cut(s) 57, 217
Hpy8I GTNNAC 2 cut(s) 112, 411
HpyAV CCTTC 2 cut(s) 259, 297
HpyCH4III ACNGT 3 cut(s) 84, 235, 365
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 112, 224, 257, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 3 cut(s) 98, 105, 320
HspAI GCGC 1 cut(s) 285
KpnI GGTACC 1 cut(s) 272
Kzo9I GATC 4 cut(s) 4, 198, 212, 388
LpnPI CCDG 7 cut(s) 80, 177, 274, 285, 312, 362, 397
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 365
MalI GATC 4 cut(s) 6, 200, 214, 390
MboI GATC 4 cut(s) 4, 198, 212, 388
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 2 cut(s) 252, 308
MnlI CCTC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 1 cut(s) 120
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 262, 300
MunI CAATTG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 313
NciI CCSGG 1 cut(s) 262
NdeII GATC 4 cut(s) 4, 198, 212, 388
NlaIII CATG 3 cut(s) 98, 105, 320
NlaIV GGNNCC 1 cut(s) 270
NsbI TGCGCA 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 226
PkrI GCNGC 1 cut(s) 243
Ple19I CGATCG 1 cut(s) 391
PsiI TTATAA 2 cut(s) 188, 336
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 243
PvuI CGATCG 1 cut(s) 391
RsaI GTAC 3 cut(s) 134, 270, 327
RsaNI GTAC 3 cut(s) 133, 269, 326
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 242
Sau3AI GATC 4 cut(s) 4, 198, 212, 388
Sau96I GGNCC 1 cut(s) 243
ScaI AGTACT 2 cut(s) 134, 327
ScrFI CCNGG 2 cut(s) 262, 300
SduI GDGCHC 1 cut(s) 114
SetI ASST 3 cut(s) 119, 270, 386
Sse9I AATT 2 cut(s) 252, 308
SsiI CCGC 2 cut(s) 146, 241
StyD4I CCNGG 2 cut(s) 260, 298
TaaI ACNGT 3 cut(s) 84, 235, 365
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 252, 308
TatI WGTACW 2 cut(s) 132, 325
TauI GCSGC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 1 cut(s) 89
VneI GTGCAC 1 cut(s) 110
ZrmI AGTACT 2 cut(s) 134, 327
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.