Prupe.6G319200_v2.0.a1

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000345
Physical Location & Seq
Reverse (-)
28311489 .. 28312952
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G319200.1

Sequence Viewer

Length: 681 bp
ATGGGGATGTTGAAATCGTCACTCGCTTTCCTTGTTCTTGTTTTTGCTTTCTTCTTTTGTTACGTTATGAGCAGCGGATCTTATGACTATTTTCAATTTGTGCAACAATGGCCACCGACTAACTGCAGAGTTCGCGTCAAGCGACCTTGCTCCAATCCCCGGCCATTACAATATTTCACCATCCATGGCCTATGGCCAAGCAATTATTCAAACCCAAAGATGCCCAGTAATTGCACAGGGTCGCAATTTAAGAAACAGAATTTGTACCCTTATATGCAATCCAAACTGAAGATATCTTGGCCGGACGTGGAAAGTGGGAATGATACAAAATTTTGGGAAGGCGAATGGAATAAACATGGTACATGTTCCGAACGAACACTTAACCTAATGCAATACTTCCAGCGATCCCACGCAATGTGGAAATCACACAATATTACAGAGATCCTTAAAAACGCTTCAATCGTACCACATCCGACAAAAACATGGAAGTACTCGGACATAGAATCACCCATTAAAAGAGCAACTAAAAGAACACCCGTCCTTCGTTGCAAACGTGATCCAGTACAGGCGAATACTCAGTTGTTACATGAAGTGGTATTTTGTTATGAATATGATGCGCTAAAGCTGATTGACTGTAATCGAACAGATTGCTGGAATAACGTTGACATTAAGTTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

227

Amino Acids

26.67

Weight (kDa)

9.31

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 75
AclI AACGTT 1 cut(s) 660
AclWI GGATC 4 cut(s) 85, 399, 436, 551
AcoI YGGCCR 4 cut(s) 110, 161, 194, 299
AcsI RAATTY 2 cut(s) 259, 329
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 5 cut(s) 266, 361, 465, 491, 564
AfiI CCNNNNNNNGG 1 cut(s) 159
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 5 cut(s) 13, 95, 210, 459, 677
AjiI CACGTC 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AluBI AGCT 1 cut(s) 625
AluI AGCT 1 cut(s) 625
AlwI GGATC 4 cut(s) 85, 399, 436, 551
AoxI GGCC 5 cut(s) 110, 161, 187, 194, 299
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 2 cut(s) 259, 329
AspLEI GCGC 1 cut(s) 619
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 169, 498
BalI TGGCCA 2 cut(s) 112, 196
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BcnI CCSGG 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 160
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 210, 604
BmuI ACTGGG 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 160
BsaJI CCNNGG 2 cut(s) 158, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 225, 560
Bse3DI GCAATG 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 158, 184
BseGI GGATG 3 cut(s) 12, 180, 469
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 225, 560
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 5 cut(s) 112, 163, 189, 196, 301
BsiSI CCGG 2 cut(s) 160, 302
BslI CCNNNNNNNGG 1 cut(s) 159
BsnI GGCC 5 cut(s) 112, 163, 189, 196, 301
Bsp143I GATC 4 cut(s) 77, 404, 441, 556
Bsp19I CCATGG 1 cut(s) 184
BspACI CCGC 1 cut(s) 75
BspANI GGCC 5 cut(s) 112, 163, 189, 196, 301
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 1 cut(s) 135
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 4 cut(s) 85, 399, 436, 551
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 2 cut(s) 225, 560
BssECI CCNNGG 2 cut(s) 158, 184
BssMI GATC 4 cut(s) 77, 404, 441, 556
BssT1I CCWWGG 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 635
BstDEI CTNAG 1 cut(s) 576
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 3 cut(s) 12, 180, 469
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 4 cut(s) 80, 407, 444, 559
BstMBI GATC 4 cut(s) 77, 404, 441, 556
BstMWI GCNNNNNNNGC 2 cut(s) 109, 132
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 124
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 77, 441
BstYI RGATCY 2 cut(s) 77, 441
BsuRI GGCC 5 cut(s) 112, 163, 189, 196, 301
BtgI CCRYGG 1 cut(s) 184
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 12, 180, 469
CfoI GCGC 1 cut(s) 619
CseI GACGC 1 cut(s) 124
Csp6I GTAC 5 cut(s) 265, 360, 464, 490, 563
CviAII CATG 5 cut(s) 185, 356, 363, 483, 587
CviJI RGCY 6 cut(s) 112, 163, 189, 196, 301, 625
CviKI_1 RGCY 6 cut(s) 112, 163, 189, 196, 301, 625
CviQI GTAC 5 cut(s) 265, 360, 464, 490, 563
DdeI CTNAG 1 cut(s) 576
DpnI GATC 4 cut(s) 79, 406, 443, 558
DpnII GATC 4 cut(s) 77, 404, 441, 556
EaeI YGGCCR 4 cut(s) 110, 161, 194, 299
Eco130I CCWWGG 1 cut(s) 184
Eco32I GATATC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 308
EcoRV GATATC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 5 cut(s) 188, 359, 366, 486, 590
FatI CATG 5 cut(s) 184, 355, 362, 482, 586
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 3 cut(s) 19, 167, 456
Fsp4HI GCNGC 1 cut(s) 73
GlaI GCGC 1 cut(s) 618
GluI GCNGC 1 cut(s) 73
HaeIII GGCC 5 cut(s) 112, 163, 189, 196, 301
HapII CCGG 2 cut(s) 160, 302
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 619
Hin1II CATG 5 cut(s) 188, 359, 366, 486, 590
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 1 cut(s) 503
HpaII CCGG 2 cut(s) 160, 302
HphI GGTGA 2 cut(s) 169, 498
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 3 cut(s) 370, 474, 496
Hpy8I GTNNAC 1 cut(s) 664
HpyAV CCTTC 2 cut(s) 332, 551
HpyCH4III ACNGT 1 cut(s) 635
HpyCH4IV ACGT 4 cut(s) 63, 306, 553, 660
HpyCH4V TGCA 6 cut(s) 103, 126, 234, 277, 391, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 132
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 4 cut(s) 63, 306, 553, 660
Hsp92II CATG 5 cut(s) 188, 359, 366, 486, 590
HspAI GCGC 1 cut(s) 617
Kzo9I GATC 4 cut(s) 77, 404, 441, 556
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 8 cut(s) 173, 222, 238, 315, 413, 551, 573, 637
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 2 cut(s) 210, 604
MaeII ACGT 4 cut(s) 63, 306, 553, 660
MaeIII GTNAC 3 cut(s) 18, 59, 582
MalI GATC 4 cut(s) 79, 406, 443, 558
MboI GATC 4 cut(s) 77, 404, 441, 556
MboII GAAGA 2 cut(s) 43, 301
MflI RGATCY 2 cut(s) 77, 441
MlsI TGGCCA 2 cut(s) 112, 196
MluCI AATT 6 cut(s) 95, 202, 229, 245, 259, 329
MluNI TGGCCA 2 cut(s) 112, 196
MmeI TCCRAC 1 cut(s) 497
Mox20I TGGCCA 2 cut(s) 112, 196
MscI TGGCCA 2 cut(s) 112, 196
MseI TTAA 5 cut(s) 249, 381, 447, 513, 669
Msp20I TGGCCA 2 cut(s) 112, 196
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 2 cut(s) 160, 302
MspR9I CCNGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 109, 132
NciI CCSGG 1 cut(s) 160
NcoI CCATGG 1 cut(s) 184
NdeII GATC 4 cut(s) 77, 404, 441, 556
NlaIII CATG 5 cut(s) 188, 359, 366, 486, 590
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 1 cut(s) 366
PciI ACATGT 1 cut(s) 362
PcsI WCGNNNNNNNCGW 3 cut(s) 139, 459, 550
PfeI GAWTC 1 cut(s) 503
PkrI GCNGC 1 cut(s) 74
PscI ACATGT 1 cut(s) 362
Psp1406I AACGTT 1 cut(s) 660
PstI CTGCAG 1 cut(s) 128
PsuI RGATCY 2 cut(s) 77, 441
RsaI GTAC 5 cut(s) 266, 361, 465, 491, 564
RsaNI GTAC 5 cut(s) 265, 360, 464, 490, 563
SaqAI TTAA 5 cut(s) 249, 381, 447, 513, 669
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 4 cut(s) 77, 404, 441, 556
ScaI AGTACT 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 160
SetI ASST 7 cut(s) 66, 148, 309, 387, 556, 627, 663
SfaNI GCATC 2 cut(s) 210, 604
SfcI CTRYAG 1 cut(s) 124
Sse9I AATT 6 cut(s) 95, 202, 229, 245, 259, 329
SsiI CCGC 1 cut(s) 75
SspI AATATT 2 cut(s) 173, 433
StyD4I CCNGG 1 cut(s) 158
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 635
TaiI ACGT 4 cut(s) 66, 309, 556, 663
TaqI TCGA 1 cut(s) 640
TasI AATT 6 cut(s) 95, 202, 229, 245, 259, 329
TatI WGTACW 2 cut(s) 489, 562
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 5 cut(s) 249, 381, 447, 513, 669
Tru9I TTAA 5 cut(s) 249, 381, 447, 513, 669
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 603, 621
XapI RAATTY 2 cut(s) 259, 329
XceI RCATGY 1 cut(s) 366
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.