Rh4DG077700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000345
Physical Location & Seq
Forward (+)
11539936 .. 11540217
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG077700.1

Sequence Viewer

Length: 186 bp
ATGCATTCCACCGGCGAGCTTGCCGACCAAATTCACGGTTCATGGAATTTGGCCCACGAATATTTCCAAGCAGGAGGTGATCGAGTGTACAGCTGCCGTGAAACTACACTCGTTCGACGGAAACCTGATAACACCGTCGCTGGAAACCGATCTTCTCCAATCTTGGCCCAGCGTCCGGAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.88

Weight (kDa)

8.0

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 175
AcsI RAATTY 2 cut(s) 30, 46
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 19, 93
AluI AGCT 2 cut(s) 19, 93
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 2 cut(s) 51, 165
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 2 cut(s) 30, 46
AspS9I GGNCC 2 cut(s) 52, 166
AsuHPI GGTGA 1 cut(s) 89
BbvI GCAGC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 81
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
BmgT120I GGNCC 2 cut(s) 52, 166
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 80
BseYI CCCAGC 1 cut(s) 168
BshFI GGCC 2 cut(s) 53, 167
BsiSI CCGG 2 cut(s) 12, 176
BslI CCNNNNNNNGG 1 cut(s) 175
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 2 cut(s) 53, 167
Bsp13I TCCGGA 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 2 cut(s) 79, 149
BspANI GGCC 2 cut(s) 53, 167
BspEI TCCGGA 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 2 cut(s) 79, 149
Bst4CI ACNGT 2 cut(s) 38, 136
BstAUI TGTACA 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 17, 21
BstKTI GATC 2 cut(s) 82, 152
BstMBI GATC 2 cut(s) 79, 149
BstV1I GCAGC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 53, 167
Cac8I GCNNGC 2 cut(s) 17, 21
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 52, 166
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 88
CviAII CATG 1 cut(s) 42
CviJI RGCY 4 cut(s) 19, 53, 93, 167
CviKI_1 RGCY 4 cut(s) 19, 53, 93, 167
CviQI GTAC 1 cut(s) 88
DpnI GATC 2 cut(s) 81, 151
DpnII GATC 2 cut(s) 79, 149
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 45
FaiI YATR 1 cut(s) 43
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
GsaI CCCAGC 1 cut(s) 172
HaeIII GGCC 2 cut(s) 53, 167
HapII CCGG 2 cut(s) 12, 176
HgaI GACGC 1 cut(s) 161
Hin1II CATG 1 cut(s) 45
HpaII CCGG 2 cut(s) 12, 176
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 120, 140
HpyCH4III ACNGT 2 cut(s) 38, 136
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 1 cut(s) 45
Kpn2I TCCGGA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 79, 149
LpnPI CCDG 5 cut(s) 25, 57, 126, 138, 182
Lsp1109I GCAGC 1 cut(s) 80
MalI GATC 2 cut(s) 81, 151
MboI GATC 2 cut(s) 79, 149
MboII GAAGA 1 cut(s) 144
MluCI AATT 2 cut(s) 30, 46
MnlI CCTC 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 93
MspI CCGG 2 cut(s) 12, 176
Mva1269I GAATGC 1 cut(s) 4
NdeII GATC 2 cut(s) 79, 149
NlaIII CATG 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 52, 166
PvuII CAGCTG 1 cut(s) 93
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 2 cut(s) 79, 149
Sau96I GGNCC 2 cut(s) 52, 166
SetI ASST 4 cut(s) 21, 79, 95, 127
SgrAI CRCCGGYG 1 cut(s) 11
Sse9I AATT 2 cut(s) 30, 46
SspI AATATT 1 cut(s) 62
TaaI ACNGT 2 cut(s) 38, 136
TaqI TCGA 2 cut(s) 82, 115
TasI AATT 2 cut(s) 30, 46
TatI WGTACW 1 cut(s) 87
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 133
XapI RAATTY 2 cut(s) 30, 46
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.