Rh3CG331700

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000345
Physical Location & Seq
Forward (+)
36831202 .. 36858953
27752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG331700.1

Sequence Viewer

Length: 477 bp
ATGGATCGCTCATTGGTATCTAAACTGAATATATCGTGGCCGAATGTGAAATATCCGAATAATATCCAGTTTTGGGATAAACAGTGGAGAAAACATGGCTCATGTTCCGTGCACACGTTTAACCAAACAGAGTACTTCACGCAAGCGGATAATCTTTGGAACTCACACAACATTACTGATATTCTTATAACTGGTGGGATCAAGCCAAATGGATCAGAATATGCATACGATACGGTAGAGCGGCCCATCCAAATTGCAACCGGGAAGGTACCCGAACTTCGTTGCGCACCATCCTCCCTTGGAAGGCAATTGTTGCATGAAGTAGTACTTTGTTATAATCATAAGGGAACAACGCCCATCGACTGTAACCCTTTACAGGCAACCTGCGATCCATGTTTCTTATGTGGCCGCTTTGACCATCCGCTTGGTACTTGTTTGGTTAAAGCTCCTCGTAGGAACTTTCTCATGCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

158

Amino Acids

17.99

Weight (kDa)

8.43

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 4 - 122 3.2e-25 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 188, 336
Acc16I TGCGCA 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 392
Acc65I GGTACC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 241
AciI CCGC 4 cut(s) 146, 241, 409, 422
AclWI GGATC 4 cut(s) 12, 206, 220, 383
AcoI YGGCCR 2 cut(s) 38, 406
AfaI GTAC 4 cut(s) 134, 270, 327, 430
AfiI CCNNNNNNNGG 3 cut(s) 73, 303, 376
AflIII ACRYGT 1 cut(s) 114
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
Alw21I GWGCWC 1 cut(s) 114
Alw44I GTGCAC 1 cut(s) 110
AlwI GGATC 4 cut(s) 12, 206, 220, 383
AoxI GGCC 3 cut(s) 38, 242, 406
ApaLI GTGCAC 1 cut(s) 110
Asp718I GGTACC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 243
AsuC2I CCSGG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 114
BanI GGYRCC 1 cut(s) 268
BarI GAAGNNNNNNTAC 2 cut(s) 261, 293
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 4 cut(s) 254, 298, 365, 426
BcnI CCSGG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 392
BisI GCNGC 2 cut(s) 242, 409
BlsI GCNGC 2 cut(s) 243, 410
BmcAI AGTACT 2 cut(s) 134, 327
Bme1390I CCNGG 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 298
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 303, 376
Bse1I ACTGG 2 cut(s) 67, 196
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 3 cut(s) 246, 290, 418
BseLI CCNNNNNNNGG 3 cut(s) 73, 303, 376
BseNI ACTGG 2 cut(s) 67, 196
BseRI GAGGAG 1 cut(s) 438
BseSI GKGCMC 1 cut(s) 114
BshFI GGCC 3 cut(s) 40, 244, 408
BshNI GGYRCC 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 3 cut(s) 73, 303, 376
BsnI GGCC 3 cut(s) 40, 244, 408
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 4 cut(s) 4, 198, 212, 388
BspACI CCGC 4 cut(s) 146, 241, 409, 422
BspANI GGCC 3 cut(s) 40, 244, 408
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 4 cut(s) 12, 206, 220, 383
BspT107I GGYRCC 1 cut(s) 268
BsrBI CCGCTC 1 cut(s) 241
BsrI ACTGG 2 cut(s) 67, 196
BssECI CCNNGG 1 cut(s) 298
BssMI GATC 4 cut(s) 4, 198, 212, 388
BssT1I CCWWGG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 84, 235, 365
BstAPI GCANNNNNTGC 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 144
BstF5I GGATG 3 cut(s) 246, 290, 418
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 4 cut(s) 7, 201, 215, 391
BstMBI GATC 4 cut(s) 4, 198, 212, 388
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 114
BstXI CCANNNNNNTGG 1 cut(s) 425
BsuRI GGCC 3 cut(s) 40, 244, 408
BtsCI GGATG 3 cut(s) 246, 290, 418
BtsIMutI CAGTG 1 cut(s) 89
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 144
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 4 cut(s) 133, 269, 326, 429
CviAII CATG 5 cut(s) 95, 102, 317, 393, 466
CviJI RGCY 6 cut(s) 40, 99, 205, 244, 408, 446
CviKI_1 RGCY 6 cut(s) 40, 99, 205, 244, 408, 446
CviQI GTAC 4 cut(s) 133, 269, 326, 429
DpnI GATC 4 cut(s) 6, 200, 214, 390
DpnII GATC 4 cut(s) 4, 198, 212, 388
EaeI YGGCCR 2 cut(s) 38, 406
Eco130I CCWWGG 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 5 cut(s) 98, 105, 320, 396, 469
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 5 cut(s) 94, 101, 316, 392, 465
Fnu4HI GCNGC 2 cut(s) 242, 409
FokI GGATG 3 cut(s) 233, 277, 405
Fsp4HI GCNGC 2 cut(s) 242, 409
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 1 cut(s) 286
GluI GCNGC 2 cut(s) 242, 409
HaeIII GGCC 3 cut(s) 40, 244, 408
HapII CCGG 1 cut(s) 261
HhaI GCGC 1 cut(s) 287
Hin1II CATG 5 cut(s) 98, 105, 320, 396, 469
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 57, 217
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 259, 297
HpyCH4III ACNGT 3 cut(s) 84, 235, 365
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 4 cut(s) 112, 224, 257, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 5 cut(s) 98, 105, 320, 396, 469
HspAI GCGC 1 cut(s) 285
KpnI GGTACC 1 cut(s) 272
Kzo9I GATC 4 cut(s) 4, 198, 212, 388
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 5 cut(s) 80, 177, 274, 362, 397
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 365
MalI GATC 4 cut(s) 6, 200, 214, 390
MbiI CCGCTC 1 cut(s) 241
MboI GATC 4 cut(s) 4, 198, 212, 388
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 2 cut(s) 252, 308
MnlI CCTC 2 cut(s) 304, 459
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 2 cut(s) 120, 441
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 313
NciI CCSGG 1 cut(s) 262
NdeII GATC 4 cut(s) 4, 198, 212, 388
NlaIII CATG 5 cut(s) 98, 105, 320, 396, 469
NlaIV GGNNCC 1 cut(s) 270
NsbI TGCGCA 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 226
PkrI GCNGC 2 cut(s) 243, 410
PsiI TTATAA 2 cut(s) 188, 336
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 243
RsaI GTAC 4 cut(s) 134, 270, 327, 430
RsaNI GTAC 4 cut(s) 133, 269, 326, 429
SaqAI TTAA 2 cut(s) 120, 441
SatI GCNGC 2 cut(s) 242, 409
Sau3AI GATC 4 cut(s) 4, 198, 212, 388
Sau96I GGNCC 1 cut(s) 243
ScaI AGTACT 2 cut(s) 134, 327
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 114
SetI ASST 4 cut(s) 119, 270, 386, 448
Sse9I AATT 2 cut(s) 252, 308
SsiI CCGC 4 cut(s) 146, 241, 409, 422
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 84, 235, 365
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 360
TasI AATT 2 cut(s) 252, 308
TatI WGTACW 2 cut(s) 132, 325
TauI GCSGC 2 cut(s) 244, 411
Tru1I TTAA 2 cut(s) 120, 441
Tru9I TTAA 2 cut(s) 120, 441
TscAI CASTG 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 333
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 1 cut(s) 89
VneI GTGCAC 1 cut(s) 110
ZrmI AGTACT 2 cut(s) 134, 327
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.