Rmu_sc0005442.1_g000003

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005442.1
OG0000345
Physical Location & Seq
Reverse (-)
7125 .. 7562
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005442.1_g000003.1.cds

Sequence Viewer

Length: 438 bp
atgcgtcgacacaatcatctcgaaactcaattgctgtcatcctcatggccaagctacactggtctgtccaacctgcacttttgggagtatgagtataacaagcacggcacttgttcagagaataacctcaaacagacggactatttcaccagagccgacgctttgtggaggcgctacaatgttaccaatatgcttttaacatcgcgccaccaaatctcgccgggatcctcctatcgttacgctgacattttgtatgccattcgacaaggaattgggggatacactcgtttgattctttgcaagaaagatccggcaaataatatttggattctgcacgaggtgataatttgtttcgatcccttggggaataacgtcatcgcttgtcgcagaagatcgagatatagttgcaacagcgggttgatagactatcctaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

145

Amino Acids

17.04

Weight (kDa)

9.3

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 7
AccII CGCG 1 cut(s) 205
AciI CCGC 1 cut(s) 414
AclWI GGATC 4 cut(s) 219, 232, 302, 350
AcoI YGGCCR 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 340
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
AlwI GGATC 4 cut(s) 219, 232, 302, 350
AoxI GGCC 1 cut(s) 47
AspLEI GCGC 2 cut(s) 174, 207
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 139, 352
BaeI ACNNNNGTAYC 2 cut(s) 271, 304
BalI TGGCCA 1 cut(s) 49
BamHI GGATCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 335
BceAI ACGGC 1 cut(s) 121
BciVI GTATCC 1 cut(s) 272
BcnI CCSGG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 81
BfuI GTATCC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 64
BsgI GTGCAG 2 cut(s) 59, 317
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 49
BsiSI CCGG 2 cut(s) 221, 311
BsnI GGCC 1 cut(s) 49
Bsp143I GATC 4 cut(s) 224, 307, 355, 392
BspACI CCGC 1 cut(s) 414
BspANI GGCC 1 cut(s) 49
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 4 cut(s) 219, 232, 302, 350
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 4 cut(s) 224, 307, 355, 392
BssSI CACGAG 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 335
BstDEI CTNAG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 2 cut(s) 174, 207
BstKTI GATC 4 cut(s) 227, 310, 358, 395
BstMBI GATC 4 cut(s) 224, 307, 355, 392
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 205
BstX2I RGATCY 2 cut(s) 224, 307
BstYI RGATCY 2 cut(s) 224, 307
BsuI GTATCC 1 cut(s) 272
BsuRI GGCC 1 cut(s) 49
BtgZI GCGATG 2 cut(s) 186, 361
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 81
CfoI GCGC 2 cut(s) 174, 207
CseI GACGC 1 cut(s) 167
CviAII CATG 1 cut(s) 45
CviJI RGCY 3 cut(s) 49, 54, 155
CviKI_1 RGCY 3 cut(s) 49, 54, 155
DdeI CTNAG 1 cut(s) 432
DpnI GATC 4 cut(s) 226, 309, 357, 394
DpnII GATC 4 cut(s) 224, 307, 355, 392
DraIII CACNNNGTG 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 1 cut(s) 48
FaiI YATR 6 cut(s) 46, 90, 96, 191, 255, 402
FatI CATG 1 cut(s) 44
FauI CCCGC 1 cut(s) 407
FblI GTMKAC 1 cut(s) 7
FokI GGATG 1 cut(s) 25
GlaI GCGC 2 cut(s) 173, 206
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 1 cut(s) 49
HapII CCGG 2 cut(s) 221, 311
HgaI GACGC 1 cut(s) 167
HhaI GCGC 2 cut(s) 174, 207
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 2 cut(s) 172, 205
HinP1I GCGC 2 cut(s) 172, 205
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HinfI GANTC 2 cut(s) 292, 328
HpaII CCGG 2 cut(s) 221, 311
HphI GGTGA 2 cut(s) 139, 352
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 20, 396
Hpy8I GTNNAC 1 cut(s) 8
Hpy99I CGWCG 2 cut(s) 9, 161
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 76, 300, 334, 408
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 2 cut(s) 172, 205
Kzo9I GATC 4 cut(s) 224, 307, 355, 392
LpnPI CCDG 5 cut(s) 45, 86, 163, 234, 324
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 181, 236
MalI GATC 4 cut(s) 226, 309, 357, 394
MboI GATC 4 cut(s) 224, 307, 355, 392
MboII GAAGA 1 cut(s) 402
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 2 cut(s) 224, 307
MlsI TGGCCA 1 cut(s) 49
MluCI AATT 3 cut(s) 29, 270, 345
MluNI TGGCCA 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 5 cut(s) 52, 137, 162, 238, 331
Mox20I TGGCCA 1 cut(s) 49
MscI TGGCCA 1 cut(s) 49
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 43
Msp20I TGGCCA 1 cut(s) 49
MspA1I CMGCKG 1 cut(s) 414
MspI CCGG 2 cut(s) 221, 311
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 29
MvnI CGCG 1 cut(s) 205
NciI CCSGG 1 cut(s) 222
NdeII GATC 4 cut(s) 224, 307, 355, 392
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 292, 328
PspN4I GGNNCC 1 cut(s) 226
PsuI RGATCY 2 cut(s) 224, 307
RseI CAYNNNNRTG 1 cut(s) 43
SalI GTCGAC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 197
Sau3AI GATC 4 cut(s) 224, 307, 355, 392
ScrFI CCNGG 1 cut(s) 222
SetI ASST 5 cut(s) 56, 75, 129, 342, 375
SmiMI CAYNNNNRTG 1 cut(s) 43
Sse9I AATT 3 cut(s) 29, 270, 345
SsiI CCGC 1 cut(s) 414
SspI AATATT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 360
TaiI ACGT 1 cut(s) 375
TaqI TCGA 5 cut(s) 7, 21, 262, 354, 395
TasI AATT 3 cut(s) 29, 270, 345
TfiI GAWTC 2 cut(s) 292, 328
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 64
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.