Rh2BG239900

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000345
Physical Location & Seq
Reverse (-)
23932725 .. 23933183
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG239900.1

Sequence Viewer

Length: 366 bp
ATGAAGAATTCAAACTTCATTATCCTTCTATCAGTATATGTACTTGTACAAGTTCTCAACGTTTCAAATGCTGAACCCTACGCGTACATGCAATTTGTACTCCAGTACCCACCTGGAGTTTGCTATGACCAATCAAAAGGTTATTGCATCTCACCTCTCCCAACCAAGTTTCATGTACATGGAATATGGCCTTCTAACTTCTCCAGTATACGTGTCCGTTGTGGGCAAGCACTGACGAATAACCCCTTTGATAAGGCGCAGATGACACCTCTGCAGACGGATTTGGGAAACTCATGGCCGTCCGTGATAACACAAACAAACAATATGCAGTTCTGGGAGCATGAGTATGAAGATCATGGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

121

Amino Acids

13.82

Weight (kDa)

6.01

Isoelectric Point (pI)

28.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 28 - 120 4.9e-18 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 208
AccII CGCG 1 cut(s) 83
AclI AACGTT 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 6 cut(s) 42, 48, 86, 99, 107, 177
AflIII ACRYGT 2 cut(s) 81, 211
AgsI TTSAA 2 cut(s) 12, 66
AjnI CCWGG 1 cut(s) 112
AoxI GGCC 2 cut(s) 188, 296
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 2 cut(s) 259, 362
AsuHPI GGTGA 1 cut(s) 144
BaeI ACNNNNGTAYC 2 cut(s) 89, 122
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 363
Bme1390I CCNGG 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 156
BpmI CTGGAG 3 cut(s) 86, 135, 187
BsaAI YACGTR 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bse1I ACTGG 2 cut(s) 103, 204
BseBI CCWGG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 103, 204
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 190, 298
BsnI GGCC 2 cut(s) 190, 298
Bsp1407I TGTACA 2 cut(s) 46, 175
Bsp143I GATC 1 cut(s) 352
BspANI GGCC 2 cut(s) 190, 298
BspFNI CGCG 1 cut(s) 83
BspMAI CTGCAG 1 cut(s) 276
BsrGI TGTACA 2 cut(s) 46, 175
BsrI ACTGG 2 cut(s) 103, 204
BssMI GATC 1 cut(s) 352
BssNAI GTATAC 1 cut(s) 209
Bst1107I GTATAC 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 114
BstAUI TGTACA 2 cut(s) 46, 175
BstBAI YACGTR 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 228
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 2 cut(s) 259, 362
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 272
BstUI CGCG 1 cut(s) 83
BstZ17I GTATAC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 190, 298
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 228
CfoI GCGC 2 cut(s) 259, 362
Csp6I GTAC 6 cut(s) 41, 47, 85, 98, 106, 176
CviAII CATG 6 cut(s) 88, 173, 179, 294, 341, 356
CviJI RGCY 2 cut(s) 190, 298
CviKI_1 RGCY 2 cut(s) 190, 298
CviQI GTAC 6 cut(s) 41, 47, 85, 98, 106, 176
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 6 cut(s) 91, 176, 182, 297, 344, 359
FatI CATG 6 cut(s) 87, 172, 178, 293, 340, 355
FblI GTMKAC 1 cut(s) 208
GlaI GCGC 2 cut(s) 258, 361
GsuI CTGGAG 3 cut(s) 86, 135, 187
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 2 cut(s) 190, 298
HhaI GCGC 2 cut(s) 259, 362
Hin1II CATG 6 cut(s) 91, 176, 182, 297, 344, 359
Hin6I GCGC 2 cut(s) 257, 360
HinP1I GCGC 2 cut(s) 257, 360
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 35, 201
HpyCH4IV ACGT 2 cut(s) 60, 211
HpyCH4V TGCA 4 cut(s) 91, 147, 274, 328
HpySE526I ACGT 2 cut(s) 60, 211
Hsp92II CATG 6 cut(s) 91, 176, 182, 297, 344, 359
HspAI GCGC 2 cut(s) 257, 360
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 5 cut(s) 99, 116, 126, 217, 319
LweI GCATC 1 cut(s) 156
MaeII ACGT 2 cut(s) 60, 211
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 2 cut(s) 16, 362
MluCI AATT 2 cut(s) 7, 92
MluI ACGCGT 1 cut(s) 81
MnlI CCTC 2 cut(s) 165, 279
MslI CAYNNNNRTG 2 cut(s) 177, 345
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 83
NdeII GATC 1 cut(s) 352
NlaIII CATG 6 cut(s) 91, 176, 182, 297, 344, 359
NspI RCATGY 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 212
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PstI CTGCAG 1 cut(s) 276
RsaI GTAC 6 cut(s) 42, 48, 86, 99, 107, 177
RsaNI GTAC 6 cut(s) 41, 47, 85, 98, 106, 176
RseI CAYNNNNRTG 2 cut(s) 177, 345
Sau3AI GATC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 114
SetI ASST 6 cut(s) 63, 115, 142, 157, 214, 271
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 177, 345
Sse9I AATT 2 cut(s) 7, 92
StyD4I CCNGG 1 cut(s) 112
TaiI ACGT 2 cut(s) 63, 214
TasI AATT 2 cut(s) 7, 92
TatI WGTACW 4 cut(s) 40, 46, 97, 175
TscAI CASTG 1 cut(s) 237
TspDTI ATGAA 4 cut(s) 7, 17, 161, 363
TspGWI ACGGA 3 cut(s) 206, 292, 293
TspRI CASTG 1 cut(s) 237
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.