Rw3G005760

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000345
Physical Location & Seq
Reverse (-)
4919521 .. 4938066
18546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005760.1

Sequence Viewer

Length: 612 bp
ATGTTTGTTTGTTTCTTATTACAATTAATTTCCACAGGATCCTATGGCTATTTCAAATTTGTTGTACAATGGCCACCAGCCCACTGCAGTGTTTATAAATGCCACAATAGTAACCCGCCACACATTTACACCATCCATGGCCTATGGCCGAGTAATCGTTCTGGCGCAATCGGGAATAAGTGCCAGGGATCGGCATTTCAAAAGCCGGCCCCTCCATTGGAAGCCAAACTGAAGATCTCTTGGCCTAACCTACATAATTCGAGTGATGTGCAATTTTGGGAACTTGAGTGGAACAGACATGGCAAGTGTTCGGAGCCAACATTTACGCAAACTCAGTACTTCAATCGAGCCCATGAAATTTGGATGATGAATGATATTAATATTACTGATATCCTTCAAAATGTTCACATCGTATCAGGGAAAACAAAAAGCTACGCAGAGATAGAATATCCCATTGAATTAAAAACTCAAACGACACCCCTCCTTCGCTGCCTAACCCCTCAAAAGTTGCATGAAGTGGTACTTTGCTGGGACCATGCTGCAAAAAATATGATCGACTGTAATGATACAGAATCAACATGCTCAAGGAAGAGTCCAATTGATATTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

203

Amino Acids

23.34

Weight (kDa)

7.61

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 15 - 187 6.2e-33 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AciI CCGC 1 cut(s) 116
AclWI GGATC 3 cut(s) 33, 46, 196
AcoI YGGCCR 2 cut(s) 71, 146
AcsI RAATTY 2 cut(s) 56, 357
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 3 cut(s) 66, 338, 522
AfiI CCNNNNNNNGG 2 cut(s) 190, 217
AgsI TTSAA 5 cut(s) 55, 200, 343, 398, 458
AjnI CCWGG 1 cut(s) 183
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 1 cut(s) 432
AluI AGCT 1 cut(s) 432
AlwI GGATC 3 cut(s) 33, 46, 196
AoxI GGCC 5 cut(s) 71, 139, 146, 207, 242
ApeKI GCWGC 2 cut(s) 489, 539
ApoI RAATTY 2 cut(s) 56, 357
AseI ATTAAT 2 cut(s) 26, 378
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 208, 532
AvaII GGWCC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 73
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 476, 526
BccI CCATC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 1 cut(s) 185
BfmI CTRYAG 2 cut(s) 85, 608
BglII AGATCT 1 cut(s) 234
BisI GCNGC 2 cut(s) 490, 540
BlsI GCNGC 2 cut(s) 491, 541
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 532
BmgT120I GGNCC 2 cut(s) 208, 532
BmiI GGNNCC 4 cut(s) 40, 210, 315, 533
BmrFI CCNGG 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 305, 568
BsaJI CCNNGG 2 cut(s) 136, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 217
Bse118I RCCGGY 1 cut(s) 205
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 136, 184
BseGI GGATG 2 cut(s) 132, 369
BseLI CCNNNNNNNGG 2 cut(s) 190, 217
BseMII CTCAG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 476, 526
BseYI CCCAGC 1 cut(s) 528
BshFI GGCC 5 cut(s) 73, 141, 148, 209, 244
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 190, 217
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 5 cut(s) 73, 141, 148, 209, 244
Bsp1286I GDGCHC 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 4 cut(s) 38, 188, 234, 552
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 1 cut(s) 116
BspANI GGCC 5 cut(s) 73, 141, 148, 209, 244
BspCNI CTCAG 1 cut(s) 346
BspLI GGNNCC 4 cut(s) 40, 210, 315, 533
BspMAI CTGCAG 1 cut(s) 89
BspPI GGATC 3 cut(s) 33, 46, 196
BsrFI RCCGGY 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 136, 184
BssMI GATC 4 cut(s) 38, 188, 234, 552
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 560
Bst6I CTCTTC 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 2 cut(s) 132, 369
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 4 cut(s) 41, 191, 237, 555
BstMBI GATC 4 cut(s) 38, 188, 234, 552
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 2 cut(s) 85, 608
BstV1I GCAGC 2 cut(s) 476, 526
BstX2I RGATCY 2 cut(s) 38, 234
BstYI RGATCY 2 cut(s) 38, 234
BsuRI GGCC 5 cut(s) 73, 141, 148, 209, 244
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 2 cut(s) 132, 369
BtsI GCAGTG 2 cut(s) 82, 94
BtsIMutI CAGTG 2 cut(s) 82, 94
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 208, 532
Csp6I GTAC 3 cut(s) 65, 337, 521
CviAII CATG 6 cut(s) 137, 299, 353, 512, 536, 579
CviQI GTAC 3 cut(s) 65, 337, 521
DdeI CTNAG 1 cut(s) 333
DpnI GATC 4 cut(s) 40, 190, 236, 554
DpnII GATC 4 cut(s) 38, 188, 234, 552
EaeI YGGCCR 2 cut(s) 71, 146
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
Eco130I CCWWGG 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 352
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 6 cut(s) 140, 302, 356, 515, 539, 582
FalI AAGNNNNNCTT 2 cut(s) 507, 539
FaqI GGGAC 1 cut(s) 545
FatI CATG 6 cut(s) 136, 298, 352, 511, 535, 578
FauI CCCGC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 490, 540
FokI GGATG 2 cut(s) 119, 376
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 2 cut(s) 490, 540
GlaI GCGC 1 cut(s) 166
GluI GCNGC 2 cut(s) 490, 540
GsaI CCCAGC 1 cut(s) 532
HaeIII GGCC 5 cut(s) 73, 141, 148, 209, 244
HapII CCGG 1 cut(s) 206
HhaI GCGC 1 cut(s) 167
Hin1II CATG 6 cut(s) 140, 302, 356, 515, 539, 582
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 2 cut(s) 572, 592
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 2 cut(s) 404, 494
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4V TGCA 4 cut(s) 87, 271, 511, 542
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 6 cut(s) 140, 302, 356, 515, 539, 582
HspAI GCGC 1 cut(s) 165
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Kzo9I GATC 4 cut(s) 38, 188, 234, 552
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 8 cut(s) 21, 90, 147, 170, 197, 219, 402, 514
Lsp1109I GCAGC 2 cut(s) 476, 526
MaeIII GTNAC 1 cut(s) 110
MalI GATC 4 cut(s) 40, 190, 236, 554
MboI GATC 4 cut(s) 38, 188, 234, 552
MboII GAAGA 2 cut(s) 244, 601
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 2 cut(s) 38, 234
MhlI GDGCHC 1 cut(s) 352
MlsI TGGCCA 1 cut(s) 73
MluCI AATT 8 cut(s) 23, 27, 56, 256, 272, 357, 458, 597
MluNI TGGCCA 1 cut(s) 73
MlyI GAGTC 1 cut(s) 601
MnlI CCTC 3 cut(s) 222, 491, 510
Mox20I TGGCCA 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 205
MscI TGGCCA 1 cut(s) 73
MseI TTAA 3 cut(s) 26, 378, 461
MslI CAYNNNNRTG 1 cut(s) 87
Msp20I TGGCCA 1 cut(s) 73
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 1 cut(s) 185
NaeI GCCGGC 1 cut(s) 207
NcoI CCATGG 1 cut(s) 136
NdeII GATC 4 cut(s) 38, 188, 234, 552
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 6 cut(s) 140, 302, 356, 515, 539, 582
NlaIV GGNNCC 4 cut(s) 40, 210, 315, 533
NmeAIII GCCGAG 1 cut(s) 174
NspI RCATGY 1 cut(s) 582
OliI CACNNNNGTG 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 572
PkrI GCNGC 2 cut(s) 491, 541
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
PshBI ATTAAT 2 cut(s) 26, 378
PsiI TTATAA 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 528
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 4 cut(s) 40, 210, 315, 533
PspPI GGNCC 2 cut(s) 208, 532
PstI CTGCAG 1 cut(s) 89
PsuI RGATCY 2 cut(s) 38, 234
RsaI GTAC 3 cut(s) 66, 338, 522
RsaNI GTAC 3 cut(s) 65, 337, 521
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 3 cut(s) 26, 378, 461
SatI GCNGC 2 cut(s) 490, 540
Sau3AI GATC 4 cut(s) 38, 188, 234, 552
Sau96I GGNCC 2 cut(s) 208, 532
ScaI AGTACT 1 cut(s) 338
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 352
SetI ASST 2 cut(s) 252, 434
SfcI CTRYAG 2 cut(s) 85, 608
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 2 cut(s) 284, 583
SmoI CTYRAG 2 cut(s) 284, 583
Sse9I AATT 8 cut(s) 23, 27, 56, 256, 272, 357, 458, 597
SsiI CCGC 1 cut(s) 116
SspI AATATT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 560
TaqI TCGA 3 cut(s) 260, 346, 555
TasI AATT 8 cut(s) 23, 27, 56, 256, 272, 357, 458, 597
TatI WGTACW 2 cut(s) 64, 336
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 3 cut(s) 26, 378, 461
Tru9I TTAA 3 cut(s) 26, 378, 461
TscAI CASTG 2 cut(s) 89, 94
TseI GCWGC 2 cut(s) 489, 539
TspDTI ATGAA 3 cut(s) 369, 383, 528
TspRI CASTG 2 cut(s) 89, 94
VpaK11BI GGWCC 1 cut(s) 532
VspI ATTAAT 2 cut(s) 26, 378
XapI RAATTY 2 cut(s) 56, 357
XceI RCATGY 1 cut(s) 582
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.