Rmu_sc0008973.1_g000014

Peroxiredoxin-2F

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008973.1
Physical Location & Seq
Reverse (-)
70682 .. 75002
4321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008973.1_g000014.1.cds

Sequence Viewer

Length: 999 bp
atggaaacggcattgctatgtacagtctccatgctggttatttctgcttttccatccggtgctaaagccgcgaatcagtacgactatcttcaatttgttcaacaatggccgataaccttgtgctacaacaacccagcctgtattccaggtgcatcactcccactggacttctttatccatgggttatggccaagcaatttctctggccagaatcagccctgtgttggtactccgttcgactataatgaggagaagacagagggaggaggaagtgcgctgagaaaagccgttcagtttttgttctgcaacaaatttacgtatttgcttgggaaaaaccctaaattggccgtcagaaatcatccaatcggagcctcctcacgagcctacgcggtggtcacagtcgggacggagctagtctccgccgtaccggatgtttccctccagaaagttcagagttgggacaacggcgtctcctccaagttcgccaccactcctttcaaagacatttttcaaggacaagaaagtcgtcatctttggcctccctgtaacctgagtcctaaagctattagcttttgcgtgttcatagtttctgttcatgtttcaaattttattgagttctatggggactttcatgggagcttccacaaaagcttggagttggataaagatctctctgttgctttgcttggacctcgctctcagagatatcttggcgaggagaagatatgtcgtcgggaaggagatatatcgtcgaggaacaaatatcttatcaagaagcaaatatctttcgaggaagtcttgtcgaggaagggatatgtcgttgggaagagatatcttgttgaggaagaggagtcgttgggaaggagatatctcatcaaggaagaaatatcttatcgaggagcagatatcttgtcaatgaagaaatatcttgtcaaggagcagatatcttatctaggtgggaatatctcgctgaggaggatcttaataatgaatatataa

Protein Analysis

332

Amino Acids

37.34

Weight (kDa)

8.88

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 467, 522
AccII CGCG 2 cut(s) 71, 389
AciI CCGC 3 cut(s) 69, 389, 420
AclWI GGATC 1 cut(s) 986
AcoI YGGCCR 4 cut(s) 107, 188, 205, 345
AcsI RAATTY 2 cut(s) 311, 604
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 4 cut(s) 22, 80, 229, 426
AfiI CCNNNNNNNGG 2 cut(s) 224, 343
AgsI TTSAA 5 cut(s) 92, 101, 499, 512, 603
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 5 cut(s) 412, 563, 570, 639, 651
AluI AGCT 5 cut(s) 412, 563, 570, 639, 651
Alw26I GTCTC 3 cut(s) 31, 421, 475
AlwI GGATC 1 cut(s) 986
AoxI GGCC 5 cut(s) 107, 188, 205, 345, 536
ApoI RAATTY 2 cut(s) 311, 604
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 689
AvaII GGWCC 1 cut(s) 689
BalI TGGCCA 2 cut(s) 190, 207
BauI CACGAG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 971
BccI CCATC 1 cut(s) 61
BceAI ACGGC 5 cut(s) 24, 272, 332, 407, 481
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 3 cut(s) 31, 421, 475
BfaI CTAG 2 cut(s) 413, 953
BglII AGATCT 1 cut(s) 667
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 689
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 1 cut(s) 425
Bpu10I CCTNAGC 1 cut(s) 971
BsaAI YACGTR 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 178
BsaWI WCCGGW 2 cut(s) 56, 427
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 343
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 11
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 3 cut(s) 53, 358, 436
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 2 cut(s) 224, 343
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 4 cut(s) 269, 542, 713, 962
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 8 cut(s) 263, 279, 364, 463, 731, 863, 912, 988
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 2 cut(s) 71, 389
BshFI GGCC 5 cut(s) 109, 190, 207, 347, 538
BsiSI CCGG 2 cut(s) 57, 428
BslFI GGGAC 3 cut(s) 418, 473, 638
BslI CCNNNNNNNGG 2 cut(s) 224, 343
BsmAI GTCTC 3 cut(s) 31, 421, 475
BsmBI CGTCTC 1 cut(s) 475
BsmFI GGGAC 3 cut(s) 418, 473, 638
BsnI GGCC 5 cut(s) 109, 190, 207, 347, 538
Bsp1407I TGTACA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 667, 978
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 3 cut(s) 69, 389, 420
BspANI GGCC 5 cut(s) 109, 190, 207, 347, 538
BspCNI CTCAG 4 cut(s) 270, 543, 712, 963
BspFNI CGCG 2 cut(s) 71, 389
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 1 cut(s) 986
BsrDI GCAATG 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 20
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 2 cut(s) 667, 978
BssNI GRCGYC 1 cut(s) 468
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 25, 400
Bst6I CTCTTC 2 cut(s) 821, 840
BstACI GRCGYC 1 cut(s) 468
BstAUI TGTACA 1 cut(s) 20
BstBAI YACGTR 1 cut(s) 318
BstDEI CTNAG 4 cut(s) 278, 551, 699, 971
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 3 cut(s) 53, 358, 436
BstFNI CGCG 2 cut(s) 71, 389
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 2 cut(s) 670, 981
BstMAI GTCTC 3 cut(s) 31, 421, 475
BstMBI GATC 2 cut(s) 667, 978
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSNI TACGTA 1 cut(s) 318
BstUI CGCG 2 cut(s) 71, 389
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 667, 978
BstYI RGATCY 2 cut(s) 667, 978
BsuRI GGCC 5 cut(s) 109, 190, 207, 347, 538
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 3 cut(s) 53, 358, 436
BtsIMutI CAGTG 1 cut(s) 161
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 689
CseI GACGC 1 cut(s) 457
Csp6I GTAC 4 cut(s) 21, 79, 228, 425
CviAII CATG 4 cut(s) 31, 179, 596, 632
CviQI GTAC 4 cut(s) 21, 79, 228, 425
DdeI CTNAG 4 cut(s) 278, 551, 699, 971
DpnI GATC 2 cut(s) 669, 980
DpnII GATC 2 cut(s) 667, 978
DrdI GACNNNNNNGTC 2 cut(s) 467, 522
DseDI GACNNNNNNGTC 2 cut(s) 467, 522
EaeI YGGCCR 4 cut(s) 107, 188, 205, 345
Eam1104I CTCTTC 2 cut(s) 821, 840
EarI CTCTTC 2 cut(s) 821, 840
EciI GGCGGA 1 cut(s) 409
Eco105I TACGTA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 178
Eco32I GATATC 5 cut(s) 707, 833, 869, 907, 945
Eco47I GGWCC 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 145
EcoRV GATATC 5 cut(s) 707, 833, 869, 907, 945
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 475
FaeI CATG 4 cut(s) 34, 182, 599, 635
FaqI GGGAC 3 cut(s) 418, 473, 638
FatI CATG 4 cut(s) 30, 178, 595, 631
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 3 cut(s) 40, 345, 443
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 2 cut(s) 413, 953
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 5 cut(s) 109, 190, 207, 347, 538
HapII CCGG 2 cut(s) 57, 428
HgaI GACGC 1 cut(s) 457
HhaI GCGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 4 cut(s) 34, 182, 599, 635
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 4 cut(s) 73, 211, 553, 851
HpaII CCGG 2 cut(s) 57, 428
Hpy188I TCNGA 4 cut(s) 353, 368, 453, 702
Hpy188III TCNNGA 5 cut(s) 378, 403, 442, 734, 772
Hpy99I CGWCG 2 cut(s) 735, 754
HpyAV CCTTC 3 cut(s) 731, 802, 855
HpyCH4III ACNGT 2 cut(s) 25, 400
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 2 cut(s) 152, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 4 cut(s) 278, 551, 699, 971
HpySE526I ACGT 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 4 cut(s) 34, 182, 599, 635
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 2 cut(s) 667, 978
LmnI GCTCC 5 cut(s) 368, 409, 636, 899, 937
LweI GCATC 1 cut(s) 161
MaeI CTAG 2 cut(s) 413, 953
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 394, 545
MalI GATC 2 cut(s) 669, 980
MboI GATC 2 cut(s) 667, 978
MboII GAAGA 7 cut(s) 80, 265, 733, 838, 857, 893, 931
MflI RGATCY 2 cut(s) 667, 978
MlsI TGGCCA 2 cut(s) 190, 207
MluCI AATT 5 cut(s) 92, 196, 311, 341, 604
MluNI TGGCCA 2 cut(s) 190, 207
MlyI GAGTC 2 cut(s) 562, 860
MmeI TCCRAC 1 cut(s) 639
Mox20I TGGCCA 2 cut(s) 190, 207
MscI TGGCCA 2 cut(s) 190, 207
MseI TTAA 1 cut(s) 983
MslI CAYNNNNRTG 1 cut(s) 16
Msp20I TGGCCA 2 cut(s) 190, 207
MspI CCGG 2 cut(s) 57, 428
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 2 cut(s) 71, 389
MwoI GCNNNNNNNGC 1 cut(s) 68
NcoI CCATGG 1 cut(s) 178
NdeII GATC 2 cut(s) 667, 978
NlaIII CATG 4 cut(s) 34, 182, 599, 635
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 394
PfeI GAWTC 2 cut(s) 73, 211
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 2 cut(s) 561, 859
PpsI GAGTC 2 cut(s) 561, 859
Ppu21I YACGTR 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 689
PsuI RGATCY 2 cut(s) 667, 978
RsaI GTAC 4 cut(s) 22, 80, 229, 426
RsaNI GTAC 4 cut(s) 21, 79, 228, 425
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 1 cut(s) 983
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 667, 978
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 2 cut(s) 562, 860
ScrFI CCNGG 1 cut(s) 147
SfaNI GCATC 1 cut(s) 161
SinI GGWCC 1 cut(s) 689
SmiMI CAYNNNNRTG 1 cut(s) 16
SnaBI TACGTA 1 cut(s) 318
Sse9I AATT 5 cut(s) 92, 196, 311, 341, 604
SsiI CCGC 3 cut(s) 69, 389, 420
SspMI CTAG 2 cut(s) 413, 953
StyD4I CCNGG 1 cut(s) 145
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 25, 400
TaiI ACGT 1 cut(s) 320
TaqI TCGA 5 cut(s) 237, 752, 789, 803, 895
TasI AATT 5 cut(s) 92, 196, 311, 341, 604
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 2 cut(s) 73, 211
Tru1I TTAA 1 cut(s) 983
Tru9I TTAA 1 cut(s) 983
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 4 cut(s) 571, 584, 620, 932
TspGWI ACGGA 2 cut(s) 222, 422
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 689
XapI RAATTY 2 cut(s) 311, 604
XspI CTAG 2 cut(s) 413, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.