Rmu_sc0006034.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006034.1
OG0000345
Physical Location & Seq
Forward (+)
58669 .. 60264
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006034.1_g000014.1.cds

Sequence Viewer

Length: 291 bp
atggtcgaagaagtggatgggagagttgtagaggaccgaacctgcaaaagaggtggggacggtgacgcctttgcggatgtgggagtcgtcgaggaaggtgaggttgcgaaagttgaaggaggggaagtcgaagatgaggttcttgagtacttcacgcaagcggataatctttggaactcacacaacattactgatattcttataactggtgggatcaagccaaatggatcagaatatgcatacgatacggtagagcggcccatccaaattgcaaccgggaaggtaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.41

Weight (kDa)

4.14

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 50
Acc65I GGTACC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 283
AccBSI CCGCTC 1 cut(s) 256
AciI CCGC 3 cut(s) 74, 161, 256
AclWI GGATC 2 cut(s) 221, 235
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 149, 285
AgsI TTSAA 1 cut(s) 116
AlwI GGATC 2 cut(s) 221, 235
AoxI GGCC 1 cut(s) 257
Asp718I GGTACC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 34, 258
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 74, 110
AvaII GGWCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 283
BccI CCATC 2 cut(s) 11, 269
BcnI CCSGG 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 34, 258
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 66
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bse1I ACTGG 1 cut(s) 211
BseGI GGATG 3 cut(s) 22, 82, 261
BseNI ACTGG 1 cut(s) 211
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 283
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 213, 227
BspACI CCGC 3 cut(s) 74, 161, 256
BspANI GGCC 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 2 cut(s) 221, 235
BspT107I GGYRCC 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 211
BssMI GATC 2 cut(s) 213, 227
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 62, 250
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 159
BstF5I GGATG 3 cut(s) 22, 82, 261
BstKTI GATC 2 cut(s) 216, 230
BstMBI GATC 2 cut(s) 213, 227
BstSCI CCNGG 1 cut(s) 275
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 3 cut(s) 22, 82, 261
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 34, 258
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 148, 284
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviJI RGCY 2 cut(s) 220, 259
CviKI_1 RGCY 2 cut(s) 220, 259
CviQI GTAC 2 cut(s) 148, 284
DpnI GATC 2 cut(s) 215, 229
DpnII GATC 2 cut(s) 213, 227
Eco47I GGWCC 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 241
FaiI YATR 3 cut(s) 203, 237, 241
FaqI GGGAC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 3 cut(s) 29, 89, 248
Fsp4HI GCNGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 66
HinfI GANTC 1 cut(s) 84
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 74, 110
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 89, 110, 274
HpyCH4III ACNGT 2 cut(s) 62, 250
HpyCH4V TGCA 3 cut(s) 45, 239, 272
Hsp92I GRCGYC 1 cut(s) 66
KpnI GGTACC 1 cut(s) 287
Kzo9I GATC 2 cut(s) 213, 227
LpnPI CCDG 2 cut(s) 55, 192
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 215, 229
MbiI CCGCTC 1 cut(s) 256
MboI GATC 2 cut(s) 213, 227
MboII GAAGA 2 cut(s) 20, 143
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 93
MnlI CCTC 6 cut(s) 25, 44, 85, 94, 113, 130
Mph1103I ATGCAT 1 cut(s) 241
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 277
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 213, 227
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 241
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PsiI TTATAA 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 34, 258
RsaI GTAC 2 cut(s) 149, 285
RsaNI GTAC 2 cut(s) 148, 284
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 213, 227
Sau96I GGNCC 2 cut(s) 34, 258
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 277
SetI ASST 6 cut(s) 44, 55, 100, 105, 141, 285
SgeI CNNG 7 cut(s) 54, 103, 155, 166, 170, 219, 229
SinI GGWCC 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 267
SsiI CCGC 3 cut(s) 74, 161, 256
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 2 cut(s) 62, 250
TaqI TCGA 3 cut(s) 6, 90, 129
TaqII GACCGA 1 cut(s) 51
TasI AATT 1 cut(s) 267
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 259
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.