Rmu_ssc0000091.1_g000008

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000091.1
OG0000345
Physical Location & Seq
Reverse (-)
39107 .. 39836
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000091.1_g000008.1.cds

Sequence Viewer

Length: 639 bp
atgcagagccatacgaatacctacagtttgtcttgcaataccctagaggtttactgtgttaacgacaagaaatgcattccaccggcgagcttgccagccaaattcacggttcatggaatttggcccacgaatatttccgagccgattatcagctgtgacaaggcacataaactacactcgttcaacggaaatctgataactccgtcgttgaaaaccgatcttctccaatcttggcccagcgtcgtgacaaataaagatgatatgtcgttttgggaacacgaatataataagcatgggtcctgtactgcaccagctatcactcagacagcgtattttgagagagctcacaagttctggaaggagtatgatctctattccattttggaacaaaaaaatatcaagccggggcaatctcgatcgtattcactggctgattttgaagcagccgtcaagtccaagatcagtaccgacacaaaacctctcatcctttgtaagcaggacaaactaactcgtgggagcacaacaaccaacttcattttgagggaaattgtgatctgtttcgatcaccaggggacaaatctggtcaattgtacccgatcaacagattgtgaccagaagcagaagatatactacccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

212

Amino Acids

24.16

Weight (kDa)

8.31

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 101, 117
AfaI GTAC 3 cut(s) 304, 466, 592
AgsI TTSAA 3 cut(s) 184, 211, 440
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 4 cut(s) 90, 153, 314, 344
AluI AGCT 4 cut(s) 90, 153, 314, 344
Alw21I GWGCWC 2 cut(s) 346, 521
AoxI GGCC 2 cut(s) 122, 233
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 2 cut(s) 101, 117
AspS9I GGNCC 3 cut(s) 123, 234, 297
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 557
AvaII GGWCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 346
BarI GAAGNNNNNNTAC 1 cut(s) 614
BauI CACGAG 1 cut(s) 510
Bbv12I GWGCWC 2 cut(s) 346, 521
BbvI GCAGC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 569
BcnI CCSGG 1 cut(s) 405
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 22
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 2 cut(s) 405, 569
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 3 cut(s) 123, 234, 297
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 405, 569
BpuMI CCSGG 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 404, 568
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 2 cut(s) 404, 568
BseGI GGATG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 432
BseXI GCAGC 1 cut(s) 455
BseYI CCCAGC 1 cut(s) 236
BsgI GTGCAG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 419
BshFI GGCC 2 cut(s) 124, 235
BsiEI CGRYCG 1 cut(s) 419
BsiHKAI GWGCWC 2 cut(s) 346, 521
BsiSI CCGG 2 cut(s) 83, 404
BslFI GGGAC 1 cut(s) 586
BsmFI GGGAC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 2 cut(s) 124, 235
Bsp1286I GDGCHC 2 cut(s) 346, 521
Bsp143I GATC 7 cut(s) 217, 367, 416, 459, 552, 562, 596
BspANI GGCC 2 cut(s) 124, 235
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 404, 568
BssMI GATC 7 cut(s) 217, 367, 416, 459, 552, 562, 596
BssSI CACGAG 1 cut(s) 510
Bst2BI CACGAG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 3 cut(s) 26, 56, 109
BstC8I GCNNGC 3 cut(s) 88, 92, 96
BstDEI CTNAG 2 cut(s) 321, 636
BstF5I GGATG 1 cut(s) 483
BstKTI GATC 7 cut(s) 220, 370, 419, 462, 555, 565, 599
BstMBI GATC 7 cut(s) 217, 367, 416, 459, 552, 562, 596
BstMCI CGRYCG 1 cut(s) 419
BstNI CCWGG 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 403, 567
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 455
BsuRI GGCC 2 cut(s) 124, 235
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 3 cut(s) 88, 92, 96
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 3 cut(s) 123, 234, 297
CseI GACGC 1 cut(s) 229
Csp6I GTAC 3 cut(s) 303, 465, 591
CviAII CATG 2 cut(s) 113, 293
CviQI GTAC 3 cut(s) 303, 465, 591
DdeI CTNAG 2 cut(s) 321, 636
DpnI GATC 7 cut(s) 219, 369, 418, 461, 554, 564, 598
DpnII GATC 7 cut(s) 217, 367, 416, 459, 552, 562, 596
Ecl136II GAGCTC 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 567
EcoT22I ATGCAT 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 346
FaeI CATG 2 cut(s) 116, 296
FaiI YATR 8 cut(s) 12, 114, 168, 263, 285, 294, 366, 628
FaqI GGGAC 1 cut(s) 586
FatI CATG 2 cut(s) 112, 292
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 444
GsaI CCCAGC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 124, 235
HapII CCGG 2 cut(s) 83, 404
HgaI GACGC 1 cut(s) 229
Hin1II CATG 2 cut(s) 116, 296
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 2 cut(s) 83, 404
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 2 cut(s) 52, 61
Hpy188I TCNGA 3 cut(s) 139, 195, 324
Hpy188III TCNNGA 3 cut(s) 244, 355, 414
Hpy8I GTNNAC 2 cut(s) 52, 61
Hpy99I CGWCG 2 cut(s) 208, 245
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 3 cut(s) 26, 56, 109
HpyCH4V TGCA 4 cut(s) 4, 36, 75, 308
HpyF3I CTNAG 2 cut(s) 321, 636
Hsp92II CATG 2 cut(s) 116, 296
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 7 cut(s) 217, 367, 416, 459, 552, 562, 596
LmnI GCTCC 1 cut(s) 516
Lsp1109I GCAGC 1 cut(s) 455
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 3 cut(s) 155, 244, 608
MalI GATC 7 cut(s) 219, 369, 418, 461, 554, 564, 598
MboI GATC 7 cut(s) 217, 367, 416, 459, 552, 562, 596
MboII GAAGA 2 cut(s) 212, 634
MfeI CAATTG 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 346, 521
MluCI AATT 4 cut(s) 101, 117, 546, 586
MnlI CCTC 3 cut(s) 40, 489, 534
Mph1103I ATGCAT 1 cut(s) 77
MseI TTAA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 153
MspI CCGG 2 cut(s) 83, 404
MspR9I CCNGG 2 cut(s) 405, 569
MunI CAATTG 1 cut(s) 586
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 569
NciI CCSGG 1 cut(s) 405
NdeII GATC 7 cut(s) 217, 367, 416, 459, 552, 562, 596
NlaIII CATG 2 cut(s) 116, 296
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 3 cut(s) 155, 244, 608
NsiI ATGCAT 1 cut(s) 77
PctI GAATGC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 445
Ple19I CGATCG 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 346
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 3 cut(s) 123, 234, 297
PspPPI RGGWCCY 1 cut(s) 297
PvuI CGATCG 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 153
RsaI GTAC 3 cut(s) 304, 466, 592
RsaNI GTAC 3 cut(s) 303, 465, 591
SacI GAGCTC 1 cut(s) 346
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 7 cut(s) 217, 367, 416, 459, 552, 562, 596
Sau96I GGNCC 3 cut(s) 123, 234, 297
ScrFI CCNGG 2 cut(s) 405, 569
SduI GDGCHC 2 cut(s) 346, 521
SetI ASST 7 cut(s) 23, 51, 92, 155, 316, 346, 481
SfcI CTRYAG 1 cut(s) 22
SgrAI CRCCGGYG 1 cut(s) 82
SinI GGWCC 1 cut(s) 297
Sse9I AATT 4 cut(s) 101, 117, 546, 586
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 403, 567
TaaI ACNGT 3 cut(s) 26, 56, 109
TaqI TCGA 2 cut(s) 415, 561
TasI AATT 4 cut(s) 101, 117, 546, 586
TatI WGTACW 1 cut(s) 302
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 3 cut(s) 155, 244, 608
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 3 cut(s) 155, 244, 608
TspDTI ATGAA 2 cut(s) 101, 523
TspGWI ACGGA 2 cut(s) 192, 201
TspRI CASTG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 2 cut(s) 101, 117
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.