RchiOBHm_Chr3g0455911

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000345
Physical Location & Seq
Reverse (-)
5488716 .. 5491407
2692 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42280

Sequence Viewer

Length: 621 bp
ATGGGTTCCTATGAATATTTTAAATTTGTGGTACAATGGCCACCAGCCCACTGCAGGGTTAGAAAATGCACACCCCAAGCCTTGCAACAGAAAATTTACACCATCCATGGCCTATGGCCGAGTAATTATTCTAAAGCTGTTGTGTATAATTGTCCGGGATCGTCTTTTCAAAATCCGGCTCCTCCATTGGAAGCCAAACTGAAGATCTCTTGGCCCAACCTAGAACGTCCGAACGATGCAATGTTTTGGGCACTTGAGTGGGACAGGCATGGCAAGTGTTCGGAGCAGACATTTACACAAACCCAATACTTCAATCGAGCCCATGAAATTTGGGTGGGGAAGAATATTACTGACATCCTCCAGAGAGCTAGCATCTTATCGGGGAGACAAAAAGACTACGGAGTTATAGAATTAGCCGTACGATCAAAAACTCAAAAGACACCCCTCCTTCGCTGCGAACAACCAAAGCAGAAACCTACGCAGAAACCTACGCAACCTACGCAGCGGACTCAGTGGTTGCATGAGGTGGTACTTTGCTGGGACTATCATGCCAAAAATATGATTGACTGTGATGATACAGAAGCAACATGTCAAGATACTTTTCCAATCGATATTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

206

Amino Acids

24.04

Weight (kDa)

8.74

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 4 - 190 2.1e-30 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 505
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 2 cut(s) 38, 116
AcsI RAATTY 3 cut(s) 23, 93, 327
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 3 cut(s) 33, 420, 531
AfiI CCNNNNNNNGG 2 cut(s) 54, 55
AflIII ACRYGT 1 cut(s) 587
AgsI TTSAA 2 cut(s) 170, 313
AleI CACNNNNGTG 1 cut(s) 256
AluBI AGCT 2 cut(s) 137, 368
AluI AGCT 2 cut(s) 137, 368
Alw26I GTCTC 1 cut(s) 379
AlwI GGATC 1 cut(s) 166
AoxI GGCC 4 cut(s) 38, 109, 116, 212
ApeKI GCWGC 2 cut(s) 453, 502
ApoI RAATTY 3 cut(s) 23, 93, 327
AspS9I GGNCC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 156
AsuNHI GCTAGC 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 253
BalI TGGCCA 1 cut(s) 40
BanII GRGCYC 1 cut(s) 322
BbvI GCAGC 2 cut(s) 440, 514
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 401
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 2 cut(s) 221, 369
BfmI CTRYAG 2 cut(s) 52, 617
BglII AGATCT 1 cut(s) 204
BisI GCNGC 2 cut(s) 454, 503
BlsI GCNGC 2 cut(s) 455, 504
Bme1390I CCNGG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 7, 180
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 226, 381
BmtI GCTAGC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 156
Bsa29I ATCGAT 1 cut(s) 609
BsaJI CCNNGG 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 55
Bse3DI GCAATG 1 cut(s) 246
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 2 cut(s) 102, 354
BseLI CCNNNNNNNGG 2 cut(s) 54, 55
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 524
BseRI GAGGAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 2 cut(s) 440, 514
BseYI CCCAGC 1 cut(s) 537
BshFI GGCC 4 cut(s) 40, 111, 118, 214
BshVI ATCGAT 1 cut(s) 609
BsiSI CCGG 2 cut(s) 155, 176
BsiWI CGTACG 1 cut(s) 418
BslFI GGGAC 2 cut(s) 275, 554
BslI CCNNNNNNNGG 2 cut(s) 54, 55
BsmAI GTCTC 1 cut(s) 379
BsmFI GGGAC 2 cut(s) 275, 554
BsnI GGCC 4 cut(s) 40, 111, 118, 214
Bsp1286I GDGCHC 2 cut(s) 253, 322
Bsp143I GATC 3 cut(s) 158, 204, 422
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 1 cut(s) 505
BspANI GGCC 4 cut(s) 40, 111, 118, 214
BspCNI CTCAG 1 cut(s) 523
BspDI ATCGAT 1 cut(s) 609
BspLI GGNNCC 2 cut(s) 7, 180
BspMAI CTGCAG 1 cut(s) 56
BspOI GCTAGC 1 cut(s) 372
BspPI GGATC 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 3 cut(s) 158, 204, 422
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 510
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 2 cut(s) 102, 354
BstKTI GATC 3 cut(s) 161, 207, 425
BstMAI GTCTC 1 cut(s) 379
BstMBI GATC 3 cut(s) 158, 204, 422
BstMWI GCNNNNNNNGC 1 cut(s) 499
BstNSI RCATGY 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 2 cut(s) 52, 617
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 440, 514
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 609
BsuRI GGCC 4 cut(s) 40, 111, 118, 214
BsuTUI ATCGAT 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 102, 354
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 49, 518
Cac8I GCNNGC 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 213
ClaI ATCGAT 1 cut(s) 609
Csp6I GTAC 3 cut(s) 32, 419, 530
CviAII CATG 6 cut(s) 107, 269, 323, 521, 548, 588
CviQI GTAC 3 cut(s) 32, 419, 530
DdeI CTNAG 1 cut(s) 510
DpnI GATC 3 cut(s) 160, 206, 424
DpnII GATC 3 cut(s) 158, 204, 422
DraI TTTAAA 1 cut(s) 22
EaeI YGGCCR 2 cut(s) 38, 116
Eco130I CCWWGG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 6 cut(s) 110, 272, 326, 524, 551, 591
FaqI GGGAC 2 cut(s) 275, 554
FatI CATG 6 cut(s) 106, 268, 322, 520, 547, 587
Fnu4HI GCNGC 2 cut(s) 454, 503
FokI GGATG 2 cut(s) 89, 341
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 2 cut(s) 454, 503
FspBI CTAG 2 cut(s) 221, 369
GluI GCNGC 2 cut(s) 454, 503
GsaI CCCAGC 1 cut(s) 541
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 4 cut(s) 40, 111, 118, 214
HapII CCGG 2 cut(s) 155, 176
Hin1II CATG 6 cut(s) 110, 272, 326, 524, 551, 591
HinfI GANTC 1 cut(s) 508
HpaII CCGG 2 cut(s) 155, 176
Hpy188I TCNGA 2 cut(s) 231, 283
Hpy188III TCNNGA 2 cut(s) 361, 593
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 5 cut(s) 54, 69, 85, 239, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 499
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 6 cut(s) 110, 272, 326, 524, 551, 591
Kzo9I GATC 3 cut(s) 158, 204, 422
LmnI GCTCC 2 cut(s) 184, 283
LpnPI CCDG 7 cut(s) 40, 57, 168, 189, 250, 374, 523
Lsp1109I GCAGC 2 cut(s) 440, 514
LweI GCATC 2 cut(s) 226, 381
MaeI CTAG 2 cut(s) 221, 369
MaeII ACGT 1 cut(s) 226
MalI GATC 3 cut(s) 160, 206, 424
MboI GATC 3 cut(s) 158, 204, 422
MboII GAAGA 2 cut(s) 214, 352
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 2 cut(s) 253, 322
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 6 cut(s) 23, 93, 124, 148, 327, 410
MluNI TGGCCA 1 cut(s) 40
MlyI GAGTC 1 cut(s) 502
MnlI CCTC 4 cut(s) 192, 368, 455, 517
Mox20I TGGCCA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 40
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 256
Msp20I TGGCCA 1 cut(s) 40
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 2 cut(s) 155, 176
MspR9I CCNGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 499
NciI CCSGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 106
NdeII GATC 3 cut(s) 158, 204, 422
NheI GCTAGC 1 cut(s) 368
NlaIII CATG 6 cut(s) 110, 272, 326, 524, 551, 591
NlaIV GGNNCC 2 cut(s) 7, 180
NmeAIII GCCGAG 1 cut(s) 144
NspI RCATGY 1 cut(s) 591
OliI CACNNNNGTG 1 cut(s) 256
PciI ACATGT 1 cut(s) 587
Pfl23II CGTACG 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 2 cut(s) 455, 504
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PscI ACATGT 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 537
PspLI CGTACG 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 7, 180
PspPI GGNCC 1 cut(s) 213
PstI CTGCAG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 3 cut(s) 33, 420, 531
RsaNI GTAC 3 cut(s) 32, 419, 530
RseI CAYNNNNRTG 1 cut(s) 256
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 454, 503
Sau3AI GATC 3 cut(s) 158, 204, 422
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 2 cut(s) 253, 322
SetI ASST 8 cut(s) 139, 222, 229, 370, 478, 490, 499, 528
SfaNI GCATC 2 cut(s) 226, 381
SfcI CTRYAG 2 cut(s) 52, 617
SmiMI CAYNNNNRTG 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 6 cut(s) 23, 93, 124, 148, 327, 410
SsiI CCGC 1 cut(s) 505
SspI AATATT 2 cut(s) 17, 346
SspMI CTAG 2 cut(s) 221, 369
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 316, 609
TasI AATT 6 cut(s) 23, 93, 124, 148, 327, 410
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 56, 518
TseI GCWGC 2 cut(s) 453, 502
TspDTI ATGAA 2 cut(s) 27, 339
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 2 cut(s) 56, 518
XapI RAATTY 3 cut(s) 23, 93, 327
XceI RCATGY 1 cut(s) 591
XspI CTAG 2 cut(s) 221, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.