FvH4_6g07750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000345
Physical Location & Seq
Forward (+)
4652052 .. 4652659
608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07750.t1

Sequence Viewer

Length: 204 bp
ATGGAGACCAAGGCTACCGACTCCACCGCGGTGACCATCGACCAGACGACGTCGTCCACCACCATCGACAGGCTCAGCTCCGGCAACCACCTCAGCGGGGTCCACCCCATTGATGAACGGAGTGCTGATGCGGACCGCCACCAAGACATTTCTACGCTTCTGGTTTCAACTACGACTCTACGAGTAGGTTTTGGAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.17

Weight (kDa)

5.12

Isoelectric Point (pI)

23.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AatII GACGTC 1 cut(s) 53
AccII CGCG 1 cut(s) 29
AciI CCGC 5 cut(s) 27, 29, 96, 131, 136
AcyI GRCGYC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 69, 97
AgsI TTSAA 1 cut(s) 168
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 100, 133
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 2 cut(s) 100, 133
BbvCI CCTCAGC 1 cut(s) 92
BccI CCATC 2 cut(s) 44, 71
BlpI GCTNAGC 1 cut(s) 74
Bme18I GGWCC 2 cut(s) 100, 133
BmgT120I GGNCC 2 cut(s) 100, 133
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 92
Bpu1102I GCTNAGC 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 9, 27
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 97
BseDI CCNNGG 2 cut(s) 9, 27
BseLI CCNNNNNNNGG 2 cut(s) 69, 97
BseMII CTCAG 2 cut(s) 88, 106
Bsh1236I CGCG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 69, 97
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 5 cut(s) 27, 29, 96, 131, 136
BspCNI CTCAG 2 cut(s) 87, 105
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 9, 27
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 74, 92
BstDSI CCRYGG 1 cut(s) 27
BstEII GGTNACC 1 cut(s) 31
BstFNI CGCG 1 cut(s) 29
BstPI GGTNACC 1 cut(s) 31
BstUI CGCG 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 100, 133
Cfr42I CCGCGG 1 cut(s) 30
CpoI CGGWCCG 1 cut(s) 133
CspI CGGWCCG 1 cut(s) 133
CviJI RGCY 3 cut(s) 14, 73, 78
CviKI_1 RGCY 3 cut(s) 14, 73, 78
DdeI CTNAG 2 cut(s) 74, 92
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 100, 133
Eco91I GGTNACC 1 cut(s) 31
EcoO65I GGTNACC 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FauI CCCGC 1 cut(s) 89
HapII CCGG 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 50
HinfI GANTC 2 cut(s) 20, 175
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 2 cut(s) 57, 103
Hpy8I GTNNAC 2 cut(s) 57, 103
Hpy99I CGWCG 2 cut(s) 52, 55
HpyCH4IV ACGT 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 74, 92
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 50
KspI CCGCGG 1 cut(s) 30
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 55, 56, 94, 146
LweI GCATC 1 cut(s) 118
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 31
MlyI GAGTC 2 cut(s) 14, 169
MnlI CCTC 1 cut(s) 101
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 2 cut(s) 29, 96
MspI CCGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 29
PflFI GACNNNGTC 2 cut(s) 49, 52
PleI GAGTC 2 cut(s) 14, 169
PpsI GAGTC 2 cut(s) 14, 169
PspEI GGTNACC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 2 cut(s) 100, 133
PsyI GACNNNGTC 2 cut(s) 49, 52
RseI CAYNNNNRTG 1 cut(s) 29
Rsr2I CGGWCCG 1 cut(s) 133
RsrII CGGWCCG 1 cut(s) 133
SacII CCGCGG 1 cut(s) 30
Sau96I GGNCC 2 cut(s) 100, 133
SchI GAGTC 2 cut(s) 14, 169
SetI ASST 4 cut(s) 53, 80, 93, 190
SfaNI GCATC 1 cut(s) 118
Sfr303I CCGCGG 1 cut(s) 30
SgeI CNNG 9 cut(s) 22, 40, 55, 82, 93, 109, 155, 173, 194
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 2 cut(s) 100, 133
SmiMI CAYNNNNRTG 1 cut(s) 29
SsiI CCGC 5 cut(s) 27, 29, 96, 131, 136
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 39, 66
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 133
Tth111I GACNNNGTC 2 cut(s) 49, 52
VpaK11BI GGWCC 2 cut(s) 100, 133
ZraI GACGTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.