RchiOBHm_Chr6g0286961

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000345
Physical Location & Seq
Reverse (-)
50346142 .. 50347120
979 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25741

Sequence Viewer

Length: 204 bp
ATGAGTCACCAAACAGTACTAAAAGCAAACTTGGATCAACATTCTTGGTCGGATGTGGAGAAGGGAAACCATATAGGTTTCTGGAAGCATGAGTGGCAGGCTCATGGACAGTGTTTAGACACCGTCTTTCCAGTTTCCACATACCAAATATTTCCAATGGTGTCGCGATATGTGGAAGAAAAACGTGATAGGCGAGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

67

Amino Acids

8.0

Weight (kDa)

6.49

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 7 - 41 9.4e-08 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 166
AclWI GGATC 2 cut(s) 42, 191
AfaI GTAC 1 cut(s) 18
AlwI GGATC 2 cut(s) 42, 191
BmcAI AGTACT 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 166
Bsp143I GATC 2 cut(s) 34, 196
Bsp68I TCGCGA 1 cut(s) 166
BspFNI CGCG 1 cut(s) 166
BspPI GGATC 2 cut(s) 42, 191
BsrI ACTGG 1 cut(s) 131
BssMI GATC 2 cut(s) 34, 196
Bst4CI ACNGT 3 cut(s) 16, 111, 124
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 2 cut(s) 37, 199
BstMBI GATC 2 cut(s) 34, 196
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstUI CGCG 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 116
BtuMI TCGCGA 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 89, 104
CviJI RGCY 1 cut(s) 101
CviKI_1 RGCY 1 cut(s) 101
CviQI GTAC 1 cut(s) 17
DpnI GATC 2 cut(s) 36, 198
DpnII GATC 2 cut(s) 34, 196
FaeI CATG 2 cut(s) 92, 107
FaiI YATR 6 cut(s) 72, 74, 90, 105, 142, 171
FatI CATG 2 cut(s) 88, 103
FokI GGATG 1 cut(s) 65
Hin1II CATG 2 cut(s) 92, 107
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 82, 165
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 3 cut(s) 16, 111, 124
HpyCH4IV ACGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 2 cut(s) 92, 107
Kzo9I GATC 2 cut(s) 34, 196
LpnPI CCDG 3 cut(s) 67, 83, 144
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 36, 198
MboI GATC 2 cut(s) 34, 196
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 196
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 30
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 2 cut(s) 34, 196
NlaIII CATG 2 cut(s) 92, 107
NmuCI GTSAC 1 cut(s) 5
NruI TCGCGA 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PflFI GACNNNGTC 1 cut(s) 122
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 196
PsyI GACNNNGTC 1 cut(s) 122
RruI TCGCGA 1 cut(s) 166
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
Sau3AI GATC 2 cut(s) 34, 196
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 13
SetI ASST 2 cut(s) 79, 187
SgeI CNNG 9 cut(s) 43, 57, 94, 101, 110, 116, 143, 177, 197
SspI AATATT 1 cut(s) 150
TaaI ACNGT 3 cut(s) 16, 111, 124
TaiI ACGT 1 cut(s) 187
TatI WGTACW 1 cut(s) 16
TscAI CASTG 1 cut(s) 116
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
TspRI CASTG 1 cut(s) 116
Tth111I GACNNNGTC 1 cut(s) 122
ZrmI AGTACT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.