Rmu_sc0013809.1_g000009

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013809.1
OG0000345
Physical Location & Seq
Reverse (-)
33723 .. 34181
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013809.1_g000009.1.cds

Sequence Viewer

Length: 459 bp
atgacaacatcactgcaaaacgatcttggccaatcttggcccaatgtcgaaagagctaaaaccaatatagggttttggaaagaggaatacgaaaagcatgggtcttgtactgcaccagctatcacacagaaagcgtactttgagagagctcacgagctgtggaaggagtatgatctctatacaattttggataaaaagcagatcaagccggggcactcatatgcactcactgattttgaagcagccgtcaagtccaagatcggtaccgatacaatacctctcatcctgtgcaaagaggacacactaactactgggagcagcacaactggattaattctgagggaaatagttatctgtttcgatcaccagggaacaaatctggtcaattgtacccggccgacagattgcaagcggcagaagagcacaactaaagacaacatgatatactacgtaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

152

Amino Acids

17.31

Weight (kDa)

6.89

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 263
AciI CCGC 1 cut(s) 412
AcoI YGGCCR 2 cut(s) 28, 395
AfaI GTAC 5 cut(s) 109, 137, 265, 391, 453
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 4 cut(s) 56, 119, 149, 157
AluI AGCT 4 cut(s) 56, 119, 149, 157
Alw21I GWGCWC 2 cut(s) 151, 425
AoxI GGCC 3 cut(s) 28, 38, 395
ApeKI GCWGC 2 cut(s) 242, 318
AseI ATTAAT 1 cut(s) 332
Asp718I GGTACC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 2 cut(s) 210, 394
AsuHPI GGTGA 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 30
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 151
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 151, 425
BbvI GCAGC 2 cut(s) 254, 330
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 2 cut(s) 210, 394
BisI GCNGC 3 cut(s) 243, 319, 413
BlsI GCNGC 3 cut(s) 244, 320, 414
Bme1390I CCNGG 3 cut(s) 210, 368, 394
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 3 cut(s) 210, 368, 394
BmrI ACTGGG 1 cut(s) 321
BmuI ACTGGG 1 cut(s) 321
BpuMI CCSGG 2 cut(s) 210, 394
BsaAI YACGTR 1 cut(s) 451
BsaJI CCNNGG 2 cut(s) 209, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 316, 331
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 209, 367
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 316, 331
BseSI GKGCMC 1 cut(s) 216
BseX3I CGGCCG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 254, 330
BsgI GTGCAG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 3 cut(s) 30, 40, 397
BshNI GGYRCC 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 398
BsiHKAI GWGCWC 2 cut(s) 151, 425
BsiSI CCGG 2 cut(s) 209, 394
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 3 cut(s) 30, 40, 397
Bsp1286I GDGCHC 3 cut(s) 151, 216, 425
Bsp143I GATC 5 cut(s) 22, 172, 201, 258, 361
BspACI CCGC 1 cut(s) 412
BspANI GGCC 3 cut(s) 30, 40, 397
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 265
BspQI GCTCTTC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 263
BsrI ACTGG 2 cut(s) 316, 331
BssECI CCNNGG 2 cut(s) 209, 367
BssMI GATC 5 cut(s) 22, 172, 201, 258, 361
BssSI CACGAG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 5 cut(s) 25, 175, 204, 261, 364
BstMBI GATC 5 cut(s) 22, 172, 201, 258, 361
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 3 cut(s) 208, 366, 392
BstSLI GKGCMC 1 cut(s) 216
BstSNI TACGTA 1 cut(s) 451
BstV1I GCAGC 2 cut(s) 254, 330
BstZI CGGCCG 1 cut(s) 395
BsuRI GGCC 3 cut(s) 30, 40, 397
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 2 cut(s) 11, 228
Cac8I GCNNGC 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 5 cut(s) 108, 136, 264, 390, 452
CviAII CATG 2 cut(s) 98, 439
CviJI RGCY 9 cut(s) 30, 40, 56, 119, 149, 157, 208, 245, 397
CviKI_1 RGCY 9 cut(s) 30, 40, 56, 119, 149, 157, 208, 245, 397
CviQI GTAC 5 cut(s) 108, 136, 264, 390, 452
DdeI CTNAG 1 cut(s) 338
DpnI GATC 5 cut(s) 24, 174, 203, 260, 363
DpnII GATC 5 cut(s) 22, 172, 201, 258, 361
EaeI YGGCCR 2 cut(s) 28, 395
EagI CGGCCG 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Ecl136II GAGCTC 1 cut(s) 149
EclXI CGGCCG 1 cut(s) 395
Eco105I TACGTA 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 151
Eco52I CGGCCG 1 cut(s) 395
Eco53kI GAGCTC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 2 cut(s) 101, 442
FaiI YATR 8 cut(s) 68, 99, 171, 180, 220, 222, 440, 445
FatI CATG 2 cut(s) 97, 438
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 243, 319, 413
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 3 cut(s) 243, 319, 413
GluI GCNGC 3 cut(s) 243, 319, 413
HaeIII GGCC 3 cut(s) 30, 40, 397
HapII CCGG 2 cut(s) 209, 394
Hin1II CATG 2 cut(s) 101, 442
HpaII CCGG 2 cut(s) 209, 394
HphI GGTGA 1 cut(s) 356
Hpy188I TCNGA 1 cut(s) 339
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 5 cut(s) 16, 113, 224, 291, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 338
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 2 cut(s) 101, 442
KpnI GGTACC 1 cut(s) 267
Kzo9I GATC 5 cut(s) 22, 172, 201, 258, 361
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 9 cut(s) 129, 222, 297, 299, 312, 353, 365, 380, 407
Lsp1109I GCAGC 2 cut(s) 254, 330
MaeII ACGT 1 cut(s) 450
MalI GATC 5 cut(s) 24, 174, 203, 260, 363
MboI GATC 5 cut(s) 22, 172, 201, 258, 361
MboII GAAGA 1 cut(s) 430
MfeI CAATTG 1 cut(s) 385
MhlI GDGCHC 3 cut(s) 151, 216, 425
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 3 cut(s) 183, 333, 385
MluNI TGGCCA 1 cut(s) 30
MnlI CCTC 4 cut(s) 76, 288, 289, 333
Mox20I TGGCCA 1 cut(s) 30
MscI TGGCCA 1 cut(s) 30
MseI TTAA 2 cut(s) 332, 457
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 30
MspI CCGG 2 cut(s) 209, 394
MspR9I CCNGG 3 cut(s) 210, 368, 394
MunI CAATTG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 205
NciI CCSGG 2 cut(s) 210, 394
NdeI CATATG 1 cut(s) 220
NdeII GATC 5 cut(s) 22, 172, 201, 258, 361
NlaIII CATG 2 cut(s) 101, 442
NlaIV GGNNCC 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 413
PkrI GCNGC 3 cut(s) 244, 320, 414
Ppu21I YACGTR 1 cut(s) 451
PshBI ATTAAT 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 5 cut(s) 109, 137, 265, 391, 453
RsaNI GTAC 5 cut(s) 108, 136, 264, 390, 452
RseI CAYNNNNRTG 1 cut(s) 219
SacI GAGCTC 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 2 cut(s) 332, 457
SatI GCNGC 3 cut(s) 243, 319, 413
Sau3AI GATC 5 cut(s) 22, 172, 201, 258, 361
Sau96I GGNCC 1 cut(s) 39
ScrFI CCNGG 3 cut(s) 210, 368, 394
SduI GDGCHC 3 cut(s) 151, 216, 425
SetI ASST 7 cut(s) 58, 121, 151, 159, 280, 453, 457
SmiMI CAYNNNNRTG 1 cut(s) 219
SnaBI TACGTA 1 cut(s) 451
Sse9I AATT 3 cut(s) 183, 333, 385
SsiI CCGC 1 cut(s) 412
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 208, 366, 392
TaiI ACGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 48, 360
TasI AATT 3 cut(s) 183, 333, 385
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 415
Tru1I TTAA 2 cut(s) 332, 457
Tru9I TTAA 2 cut(s) 332, 457
TscAI CASTG 2 cut(s) 18, 235
TseI GCWGC 2 cut(s) 242, 318
TspRI CASTG 2 cut(s) 18, 235
VspI ATTAAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.