RchiOBHm_Chr3g0491491

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000345
Physical Location & Seq
Forward (+)
38237543 .. 38240564
3022 bp
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UTR
Exon/CDS
Intron
PRQ45446

Sequence Viewer

Length: 420 bp
ATGTCTACAGGGTATTACGAATATTTCAAACTTGTGCAACAATGGCCACCAACCACTTGCCAAAATGCAAACTGCCGCAGAGTACCGCCACCTCGCCTCTTTACCCTCCATGGGTTTTGGCCATCTAATTATTCAAACAATGTCGTGGCTAATTGCACTAACGCAATATTTCAACGGAACGGTTGGAGATCGTCTAAGTACCATTTTCCTTGTAAGTTTTCTCCACAAAATGACACTTATGTCGATAAATCTAATATAAGCCAATTGCTTCCCACAAGGATAATATTACTATCCCATATCTTTTTTAGTTTTTTAGGACCATTTTACCCTTTATTTGGCCTAGAGTTTTTTTTAAAAAATTTTCTTTTAAACAAAAACAAAGATATGTTTTTTTTTAAAATAGGGTCGTCAATCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

139

Amino Acids

16.4

Weight (kDa)

9.66

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 6 - 58 2.2e-09 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 76, 86
AcoI YGGCCR 2 cut(s) 44, 119
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 2 cut(s) 84, 200
AfiI CCNNNNNNNGG 2 cut(s) 111, 335
AgsI TTSAA 3 cut(s) 28, 135, 173
AoxI GGCC 3 cut(s) 44, 119, 337
ApoI RAATTY 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 317
AvaII GGWCC 1 cut(s) 317
BalI TGGCCA 2 cut(s) 46, 121
BccI CCATC 1 cut(s) 130
BfaI CTAG 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 335
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 111, 335
BshFI GGCC 3 cut(s) 46, 121, 339
BslI CCNNNNNNNGG 2 cut(s) 111, 335
BsnI GGCC 3 cut(s) 46, 121, 339
Bsp143I GATC 1 cut(s) 188
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 2 cut(s) 76, 86
BspANI GGCC 3 cut(s) 46, 121, 339
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 109
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 46, 121, 339
BtgI CCRYGG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 83, 199
CviAII CATG 1 cut(s) 110
CviJI RGCY 5 cut(s) 46, 121, 149, 261, 339
CviKI_1 RGCY 5 cut(s) 46, 121, 149, 261, 339
CviQI GTAC 2 cut(s) 83, 199
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
DraI TTTAAA 3 cut(s) 354, 369, 397
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 2 cut(s) 44, 119
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 113
FaiI YATR 5 cut(s) 111, 240, 257, 297, 386
FatI CATG 1 cut(s) 109
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 1 cut(s) 341
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 3 cut(s) 46, 121, 339
Hin1II CATG 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 3 cut(s) 37, 68, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 1 cut(s) 188
MaeI CTAG 1 cut(s) 341
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MfeI CAATTG 1 cut(s) 263
MlsI TGGCCA 2 cut(s) 46, 121
MluCI AATT 4 cut(s) 127, 151, 263, 358
MluNI TGGCCA 2 cut(s) 46, 121
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 3 cut(s) 102, 107, 116
Mox20I TGGCCA 2 cut(s) 46, 121
MscI TGGCCA 2 cut(s) 46, 121
MseI TTAA 4 cut(s) 353, 368, 396, 418
Msp20I TGGCCA 2 cut(s) 46, 121
MunI CAATTG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 109
NdeII GATC 1 cut(s) 188
NlaIII CATG 1 cut(s) 113
PkrI GCNGC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 317
RsaI GTAC 2 cut(s) 84, 200
RsaNI GTAC 2 cut(s) 83, 199
SaqAI TTAA 4 cut(s) 353, 368, 396, 418
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 1 cut(s) 317
SetI ASST 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 6
SgeI CNNG 9 cut(s) 21, 44, 69, 105, 122, 157, 222, 288, 353
SinI GGWCC 1 cut(s) 317
Sse9I AATT 4 cut(s) 127, 151, 263, 358
SsiI CCGC 2 cut(s) 76, 86
SspI AATATT 3 cut(s) 23, 168, 285
SspMI CTAG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 243
TasI AATT 4 cut(s) 127, 151, 263, 358
TauI GCSGC 1 cut(s) 78
Tru1I TTAA 4 cut(s) 353, 368, 396, 418
Tru9I TTAA 4 cut(s) 353, 368, 396, 418
TspGWI ACGGA 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.