RLG00000012522

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000345
Physical Location & Seq
Forward (+)
19540504 .. 19541048
545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012522

Sequence Viewer

Length: 378 bp
ATGGCACAAAATACTTGCAAGCCCAATGTGGCTTTTGTCGTCACTGCTCTAGCTTTGGTCTTCACTCTAACGTCATCATATACACCCTACCAATACCTGTTGTTTGTTCGACGGTGGCCAAAGTCTGTTTGTTATGATACCAACTGCCCTAACACTCCCCCTCCAATCATCACAATGAGTCACCAAACAGTACTAAAAGCAAACTTGGAACAACATTCTTGGTCGGATGTGGAGAAGGGAAACCATATAGGTTTCTGGAAGCATGAGTGGCAGGCTCATGGACAGTGTTTAGACACCGTCTTTCCAGTTTCCACATACCAAATATTTCCAATGGTCTCACGATATGTGGAAGAAAAACGTGATAGGCAAGATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

126

Amino Acids

14.52

Weight (kDa)

7.71

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 63 - 99 1.2e-06 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 116
AfaI GTAC 1 cut(s) 192
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 1 cut(s) 365
AoxI GGCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 173
BalI TGGCCA 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 1 cut(s) 50
BmcAI AGTACT 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse1I ACTGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 305
BshFI GGCC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 340
BsnI GGCC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 340
Bsp143I GATC 1 cut(s) 370
BspANI GGCC 1 cut(s) 118
BspPI GGATC 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 340
BsrI ACTGG 1 cut(s) 305
BssMI GATC 1 cut(s) 370
Bst4CI ACNGT 4 cut(s) 114, 190, 285, 298
BstC8I GCNNGC 2 cut(s) 20, 273
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 290
Cac8I GCNNGC 2 cut(s) 20, 273
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 263, 278
CviJI RGCY 5 cut(s) 22, 32, 53, 118, 275
CviKI_1 RGCY 5 cut(s) 22, 32, 53, 118, 275
CviQI GTAC 1 cut(s) 191
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 340
FaeI CATG 2 cut(s) 266, 281
FaiI YATR 9 cut(s) 79, 81, 135, 246, 248, 264, 279, 316, 345
FatI CATG 2 cut(s) 262, 277
FokI GGATG 1 cut(s) 239
FspBI CTAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 2 cut(s) 266, 281
HinfI GANTC 1 cut(s) 178
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 256, 339
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 4 cut(s) 114, 190, 285, 298
HpyCH4IV ACGT 2 cut(s) 71, 358
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpySE526I ACGT 2 cut(s) 71, 358
Hsp92II CATG 2 cut(s) 266, 281
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 4 cut(s) 110, 241, 257, 318
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 71, 358
MaeIII GTNAC 2 cut(s) 40, 179
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 2 cut(s) 52, 362
MflI RGATCY 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 118
MluNI TGGCCA 1 cut(s) 118
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 1 cut(s) 171
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 268
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 266, 281
NmuCI GTSAC 2 cut(s) 40, 179
PflFI GACNNNGTC 1 cut(s) 296
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 370
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 173
Sau3AI GATC 1 cut(s) 370
ScaI AGTACT 1 cut(s) 192
SchI GAGTC 1 cut(s) 187
SetI ASST 5 cut(s) 55, 74, 99, 253, 361
SmiMI CAYNNNNRTG 1 cut(s) 173
SspI AATATT 1 cut(s) 324
SspMI CTAG 1 cut(s) 50
TaaI ACNGT 4 cut(s) 114, 190, 285, 298
TaiI ACGT 2 cut(s) 74, 361
TaqI TCGA 1 cut(s) 109
TatI WGTACW 1 cut(s) 190
TscAI CASTG 2 cut(s) 49, 290
TseFI GTSAC 2 cut(s) 40, 179
Tsp45I GTSAC 2 cut(s) 40, 179
TspRI CASTG 2 cut(s) 49, 290
Tth111I GACNNNGTC 1 cut(s) 296
XspI CTAG 1 cut(s) 50
ZrmI AGTACT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.