Rorug06G0126000

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000345
Physical Location & Seq
Reverse (-)
17475283 .. 17485766
10484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0126000.1

Sequence Viewer

Length: 708 bp
ATGGAAATGTTCAAGGCCATTGATGAAGAGCTGAGGACATATGATAATATTGATGAGACTAATGGCCATACTCAAGGGCACAGTAATGGCTCAAACATGATGGAACTCTCTGACATTGTCCTAGATGATGTGCTCGACTCAATCAAGAATGTTGACCATGTCTCCAGCTCGATCAATCTTGATGATGGTCCACAGCCAAGATGCTTGGATGAGATGTCCACTAACCAAGTCGAAGAGAGCACTAGAGCTAGTTCTGAAGCTAACGGCAACATTAATGTTGTACAACCCAATCTTAATGAAGCCCGATTTGATGATAGCCTCCACAAGCAGCAGTATGCAGCAAATGACCAAGAGGGGACACTTGATGAGAGTGATGACTCAGGGGACACTCAGGGGATGCCTGATGACTTCGACATGTATTACTTTGAGGAGTTAGCCTTGCCAAATGAGTTTAGATTATGTAGTTTTGATATGGGCTTGGATTATGCTAAGGGAATCAATGGAATTAGGAGTATAGATGGATATGGGATTGAGCAAAATGAAGCTGAAAGGGTATTGCATTTGGCACCAATAGGAAACTCTTGGGTTCTTCAGCTAAGGAAGTCAAAAGGGGTCGTAATTCATGGTGTCCTACTTTTCATAACATTGATTGGAAAGATATTTGTGAACCTTGGTTCAGTGGGGGGTGATCTAGCTTTACGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

235

Amino Acids

26.09

Weight (kDa)

4.28

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 565
AcoI YGGCCR 1 cut(s) 64
AcuI CTGAAG 2 cut(s) 276, 575
AfaI GTAC 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 7 cut(s) 31, 168, 248, 260, 545, 595, 695
AluI AGCT 7 cut(s) 31, 168, 248, 260, 545, 595, 695
Alw21I GWGCWC 2 cut(s) 135, 242
Alw26I GTCTC 2 cut(s) 50, 166
AoxI GGCC 2 cut(s) 15, 64
ApeKI GCWGC 2 cut(s) 328, 338
AseI ATTAAT 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 698
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 81
BalI TGGCCA 1 cut(s) 66
BanI GGYRCC 1 cut(s) 565
Bbv12I GWGCWC 2 cut(s) 135, 242
BbvCI CCTCAGC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 340, 350
BccI CCATC 3 cut(s) 94, 179, 512
BceAI ACGGC 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 50, 166
BfaI CTAG 4 cut(s) 122, 243, 249, 692
BisI GCNGC 2 cut(s) 329, 339
BlsI GCNGC 2 cut(s) 330, 340
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 567
BmsI GCATC 2 cut(s) 191, 387
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 3 cut(s) 32, 489, 596
BpuEI CTTGAG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 670
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 2 cut(s) 214, 402
BseMII CTCAG 3 cut(s) 23, 393, 404
BseRI GAGGAG 1 cut(s) 443
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 2 cut(s) 340, 350
BshFI GGCC 2 cut(s) 17, 66
BshNI GGYRCC 1 cut(s) 565
BsiHKAI GWGCWC 2 cut(s) 135, 242
BslFI GGGAC 2 cut(s) 370, 398
BsmAI GTCTC 2 cut(s) 50, 166
BsmFI GGGAC 2 cut(s) 370, 398
BsnI GGCC 2 cut(s) 17, 66
Bsp1286I GDGCHC 3 cut(s) 81, 135, 242
Bsp1407I TGTACA 1 cut(s) 280
Bsp143I GATC 2 cut(s) 171, 688
BspANI GGCC 2 cut(s) 17, 66
BspCNI CTCAG 3 cut(s) 24, 392, 403
BspLI GGNNCC 1 cut(s) 567
BspQI GCTCTTC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 565
BsrGI TGTACA 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 2 cut(s) 171, 688
BssT1I CCWWGG 1 cut(s) 670
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 21, 228
BstAUI TGTACA 1 cut(s) 280
BstDEI CTNAG 5 cut(s) 32, 379, 390, 489, 596
BstF5I GGATG 2 cut(s) 214, 402
BstKTI GATC 2 cut(s) 174, 691
BstMAI GTCTC 2 cut(s) 50, 166
BstMBI GATC 2 cut(s) 171, 688
BstNSI RCATGY 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 340, 350
BsuRI GGCC 2 cut(s) 17, 66
BtsCI GGATG 2 cut(s) 214, 402
BtsIMutI CAGTG 1 cut(s) 684
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 281
CviAII CATG 4 cut(s) 97, 158, 415, 623
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 5 cut(s) 32, 379, 390, 489, 596
DpnI GATC 2 cut(s) 173, 690
DpnII GATC 2 cut(s) 171, 688
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 21, 228
EarI CTCTTC 2 cut(s) 21, 228
Eco130I CCWWGG 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 2 cut(s) 276, 575
EcoT14I CCWWGG 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 670
FaeI CATG 4 cut(s) 100, 161, 418, 626
FaqI GGGAC 2 cut(s) 370, 398
FatI CATG 4 cut(s) 96, 157, 414, 622
FauNDI CATATG 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 329, 339
FokI GGATG 2 cut(s) 221, 409
Fsp4HI GCNGC 2 cut(s) 329, 339
FspBI CTAG 4 cut(s) 122, 243, 249, 692
GluI GCNGC 2 cut(s) 329, 339
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 2 cut(s) 17, 66
Hin1II CATG 4 cut(s) 100, 161, 418, 626
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 137, 377, 495
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 4 cut(s) 154, 191, 219, 667
Hpy188I TCNGA 2 cut(s) 112, 256
Hpy188III TCNNGA 2 cut(s) 145, 179
Hpy8I GTNNAC 4 cut(s) 154, 191, 219, 667
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 338, 559
HpyF3I CTNAG 5 cut(s) 32, 379, 390, 489, 596
Hsp92II CATG 4 cut(s) 100, 161, 418, 626
Kzo9I GATC 2 cut(s) 171, 688
LguI GCTCTTC 1 cut(s) 21
LpnPI CCDG 4 cut(s) 178, 366, 377, 414
Lsp1109I GCAGC 2 cut(s) 340, 350
LweI GCATC 2 cut(s) 191, 387
MaeI CTAG 4 cut(s) 122, 243, 249, 692
MalI GATC 2 cut(s) 173, 690
MboI GATC 2 cut(s) 171, 688
MboII GAAGA 3 cut(s) 38, 245, 581
MhlI GDGCHC 3 cut(s) 81, 135, 242
MlsI TGGCCA 1 cut(s) 66
MluCI AATT 2 cut(s) 504, 618
MluNI TGGCCA 1 cut(s) 66
MlyI GAGTC 2 cut(s) 131, 371
MnlI CCTC 4 cut(s) 27, 329, 346, 421
Mox20I TGGCCA 1 cut(s) 66
MscI TGGCCA 1 cut(s) 66
MseI TTAA 2 cut(s) 273, 294
MslI CAYNNNNRTG 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 66
NdeI CATATG 1 cut(s) 40
NdeII GATC 2 cut(s) 171, 688
NlaIII CATG 4 cut(s) 100, 161, 418, 626
NlaIV GGNNCC 1 cut(s) 567
NspI RCATGY 1 cut(s) 418
PciI ACATGT 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 495
PflFI GACNNNGTC 2 cut(s) 116, 158
PkrI GCNGC 2 cut(s) 330, 340
PleI GAGTC 2 cut(s) 131, 371
PpsI GAGTC 2 cut(s) 131, 371
PscI ACATGT 1 cut(s) 414
PshBI ATTAAT 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 1 cut(s) 188
PsyI GACNNNGTC 2 cut(s) 116, 158
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 273, 294
SatI GCNGC 2 cut(s) 329, 339
Sau3AI GATC 2 cut(s) 171, 688
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 2 cut(s) 131, 371
SduI GDGCHC 3 cut(s) 81, 135, 242
SetI ASST 8 cut(s) 33, 170, 250, 262, 547, 597, 672, 697
SfaNI GCATC 2 cut(s) 191, 387
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 2 cut(s) 504, 618
SspI AATATT 1 cut(s) 49
SspMI CTAG 4 cut(s) 122, 243, 249, 692
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 4 cut(s) 135, 170, 231, 411
TasI AATT 2 cut(s) 504, 618
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 1 cut(s) 495
Tru1I TTAA 2 cut(s) 273, 294
Tru9I TTAA 2 cut(s) 273, 294
TscAI CASTG 1 cut(s) 684
TseI GCWGC 2 cut(s) 328, 338
TspDTI ATGAA 5 cut(s) 39, 312, 555, 611, 628
TspRI CASTG 1 cut(s) 684
Tth111I GACNNNGTC 2 cut(s) 116, 158
VpaK11BI GGWCC 1 cut(s) 188
VspI ATTAAT 1 cut(s) 273
XceI RCATGY 1 cut(s) 418
XspI CTAG 4 cut(s) 122, 243, 249, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.