Rh3DG084000

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000345
Physical Location & Seq
Forward (+)
6543632 .. 6544111
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG084000.1

Sequence Viewer

Length: 345 bp
ATGGCATTCCTAGCAGTTAGGACACTAATTGTTCTTATGCTTATTTCTACATTTGCTAAAGCCGCAAACAAATATGACTATCTACAACTAGTGCAACAATGGCCTAAAACGTTCTGCCATAATAACCGAGCTTGCATTCAAGGTGCAGTCCTCCCGGAGCTGTTCTCGATACATGGTATGTGGCCATCTAATTTCTCCGGCCAGAACGACGCTTGTGTTGGAACTCTGTTCAGCATGAGAGCTAGAGATGCGTCGACACAATCATCTCGAAACTCAATTGCTGTCATCCTCATGGCCAAGCTACACTGGTCTGTCCAACCTGCACTTTTGGGAGTACGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

114

Amino Acids

12.68

Weight (kDa)

9.81

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 25 - 73 1.6e-09 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 254
AciI CCGC 1 cut(s) 63
AclI AACGTT 1 cut(s) 110
AcoI YGGCCR 3 cut(s) 182, 199, 294
AfaI GTAC 1 cut(s) 336
AgsI TTSAA 1 cut(s) 140
AhlI ACTAGT 1 cut(s) 88
AluBI AGCT 4 cut(s) 131, 160, 242, 301
AluI AGCT 4 cut(s) 131, 160, 242, 301
AoxI GGCC 4 cut(s) 101, 182, 199, 294
AsuC2I CCSGG 1 cut(s) 155
BalI TGGCCA 2 cut(s) 184, 296
BccI CCATC 1 cut(s) 193
BcnI CCSGG 1 cut(s) 155
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 3 cut(s) 11, 89, 243
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 238
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuMI CCSGG 1 cut(s) 155
BsaXI ACNNNNNCTCC 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 311
BsgI GTGCAG 2 cut(s) 165, 306
BshFI GGCC 4 cut(s) 103, 184, 201, 296
BsiSI CCGG 2 cut(s) 155, 198
BsmI GAATGC 2 cut(s) 5, 135
BsnI GGCC 4 cut(s) 103, 184, 201, 296
BspACI CCGC 1 cut(s) 63
BspANI GGCC 4 cut(s) 103, 184, 201, 296
BspMI ACCTGC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 133
BstF5I GGATG 1 cut(s) 285
BstMWI GCNNNNNNNGC 4 cut(s) 11, 62, 100, 248
BstSCI CCNGG 1 cut(s) 153
BsuRI GGCC 4 cut(s) 103, 184, 201, 296
BtsCI GGATG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 304
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 133
CseI GACGC 2 cut(s) 218, 240
Csp6I GTAC 1 cut(s) 335
CviAII CATG 3 cut(s) 173, 235, 292
CviJI RGCY 9 cut(s) 62, 103, 131, 160, 184, 201, 242, 296, 301
CviKI_1 RGCY 9 cut(s) 62, 103, 131, 160, 184, 201, 242, 296, 301
CviQI GTAC 1 cut(s) 335
EaeI YGGCCR 3 cut(s) 182, 199, 294
FaeI CATG 3 cut(s) 176, 238, 295
FaiI YATR 8 cut(s) 38, 75, 120, 174, 179, 236, 293, 343
FatI CATG 3 cut(s) 172, 234, 291
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 3 cut(s) 11, 89, 243
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 4 cut(s) 103, 184, 201, 296
HapII CCGG 2 cut(s) 155, 198
HgaI GACGC 2 cut(s) 218, 240
Hin1II CATG 3 cut(s) 176, 238, 295
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HpaII CCGG 2 cut(s) 155, 198
Hpy166II GTNNAC 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 166, 267
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 2 cut(s) 212, 256
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 94, 135, 146, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 62, 100, 248
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 3 cut(s) 176, 238, 295
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 168, 211, 215, 292, 333
LweI GCATC 1 cut(s) 238
MaeI CTAG 3 cut(s) 11, 89, 243
MaeII ACGT 1 cut(s) 110
MfeI CAATTG 1 cut(s) 276
MlsI TGGCCA 2 cut(s) 184, 296
MluCI AATT 3 cut(s) 27, 190, 276
MluNI TGGCCA 2 cut(s) 184, 296
MmeI TCCRAC 2 cut(s) 199, 340
MnlI CCTC 2 cut(s) 161, 299
Mox20I TGGCCA 2 cut(s) 184, 296
MscI TGGCCA 2 cut(s) 184, 296
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 2 cut(s) 184, 296
MspI CCGG 2 cut(s) 155, 198
MspR9I CCNGG 1 cut(s) 155
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 2 cut(s) 5, 135
MwoI GCNNNNNNNGC 4 cut(s) 11, 62, 100, 248
NciI CCSGG 1 cut(s) 155
NlaIII CATG 3 cut(s) 176, 238, 295
PctI GAATGC 2 cut(s) 5, 135
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 1 cut(s) 64
Psp1406I AACGTT 1 cut(s) 110
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
RseI CAYNNNNRTG 1 cut(s) 290
SalI GTCGAC 1 cut(s) 253
SatI GCNGC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 155
SetI ASST 7 cut(s) 113, 133, 145, 162, 244, 303, 322
SfaNI GCATC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 290
SpeI ACTAGT 1 cut(s) 88
Sse9I AATT 3 cut(s) 27, 190, 276
SsiI CCGC 1 cut(s) 63
SspMI CTAG 3 cut(s) 11, 89, 243
StyD4I CCNGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 167, 254, 268
TasI AATT 3 cut(s) 27, 190, 276
TauI GCSGC 1 cut(s) 65
TscAI CASTG 1 cut(s) 311
TspRI CASTG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 254
XspI CTAG 3 cut(s) 11, 89, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.