RLG00000025323

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000345
Physical Location & Seq
Forward (+)
44293652 .. 44294864
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025323

Sequence Viewer

Length: 666 bp
ATGCCCATAGACCATACTTGCCATCAGAGCATGACACCTGGTCTAGTGGGTAAGAGGAGGTCCTTGATTTCCGCTAATTATGTCTCCTTTGCAACATCTTTGTCTAAGAGTAATCCTGATAGTCAAGGCCTTAACCTTGGAGGTCGGGGCTTCTATGCTTGGGGTTCGAACTCTTGGTCTTGGGGGTTGAGGCTCTTGATTACTTTGGATTATGCTTCTCTGATGTATACAAATCAAACATTGATAAACGACCTGACTCGCTCTTGGCCGGACCTGAAAAATGGGAACAATGGAGGGTTTTGGAAAGAGCAGTGGGATAAACATGGCAAATGCTCAGAACAGACATATACACAAAAGCAATACTTCCAGCGCTCCTTCCAGATGTGGAACCAATTCAATATTACTAGTATCTTTACTGCCGCTGGCGTAGTATCTCCGCCAGGGACACAACCAAGTATAGTCAACGCCAGCGACTTAGAAGCACGCATTAAAGCAGTAACTCAGACGGACCCTGTCCTTCGGTGCAGAAAAGTTACAGTGCAGAACGTTAAACAGCCAGTTCAGTTACTTTATGAAGTGGGCATTTGTTACGGTTATGTTGGAACAAATCTCATTCCTTGTACCAGCACACGAGGAAAATGCGGTGTAAATAATATTTACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

222

Amino Acids

24.77

Weight (kDa)

9.35

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 79 - 207 2.4e-22 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 227
AciI CCGC 4 cut(s) 72, 420, 437, 642
AclI AACGTT 1 cut(s) 546
AcoI YGGCCR 1 cut(s) 266
AfaI GTAC 1 cut(s) 622
AfeI AGCGCT 1 cut(s) 371
AgsI TTSAA 1 cut(s) 397
AhdI GACNNNNNGTC 1 cut(s) 39
AhlI ACTAGT 1 cut(s) 404
AjnI CCWGG 2 cut(s) 37, 439
Alw26I GTCTC 1 cut(s) 88
Aor51HI AGCGCT 1 cut(s) 371
AoxI GGCC 2 cut(s) 127, 266
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 1 cut(s) 372
AspS9I GGNCC 3 cut(s) 60, 271, 508
AsuII TTCGAA 1 cut(s) 167
AvaII GGWCC 3 cut(s) 60, 271, 508
BauI CACGAG 1 cut(s) 630
BccI CCATC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 621, 655
BciT130I CCWGG 2 cut(s) 39, 441
BcoDI GTCTC 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 404
BfaI CTAG 2 cut(s) 44, 405
BfoI RGCGCY 1 cut(s) 373
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 2 cut(s) 39, 441
Bme18I GGWCC 3 cut(s) 60, 271, 508
BmeRI GACNNNNNGTC 1 cut(s) 39
BmgT120I GGNCC 3 cut(s) 60, 271, 508
BmiI GGNNCC 2 cut(s) 389, 510
BmrFI CCNGG 2 cut(s) 39, 441
Bpu14I TTCGAA 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 136, 440
Bse1I ACTGG 1 cut(s) 557
BseBI CCWGG 2 cut(s) 39, 441
BseDI CCNNGG 2 cut(s) 136, 440
BseMII CTCAG 2 cut(s) 348, 515
BseNI ACTGG 1 cut(s) 557
BseRI GAGGAG 1 cut(s) 70
BsgI GTGCAG 2 cut(s) 544, 560
BshFI GGCC 2 cut(s) 129, 268
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 457
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 2 cut(s) 129, 268
Bsp119I TTCGAA 1 cut(s) 167
BspACI CCGC 4 cut(s) 72, 420, 437, 642
BspANI GGCC 2 cut(s) 129, 268
BspCNI CTCAG 2 cut(s) 347, 514
BspLI GGNNCC 2 cut(s) 389, 510
BspT104I TTCGAA 1 cut(s) 167
BsrI ACTGG 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 136, 440
BssNAI GTATAC 1 cut(s) 228
BssSI CACGAG 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 39, 441
Bst4CI ACNGT 2 cut(s) 538, 593
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 424, 469, 484
BstDEI CTNAG 4 cut(s) 105, 334, 475, 501
BstH2I RGCGCY 1 cut(s) 373
BstHHI GCGC 1 cut(s) 372
BstMAI GTCTC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 2 cut(s) 39, 441
BstSCI CCNGG 2 cut(s) 37, 439
BstZ17I GTATAC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 129, 268
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 2 cut(s) 317, 543
Cac8I GCNNGC 3 cut(s) 424, 469, 484
CfoI GCGC 1 cut(s) 372
Cfr13I GGNCC 3 cut(s) 60, 271, 508
CsiI ACCWGGT 1 cut(s) 37
Csp6I GTAC 1 cut(s) 621
CviAII CATG 2 cut(s) 31, 323
CviJI RGCY 5 cut(s) 129, 150, 193, 268, 556
CviKI_1 RGCY 5 cut(s) 129, 150, 193, 268, 556
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 4 cut(s) 105, 334, 475, 501
DriI GACNNNNNGTC 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 266
Eam1105I GACNNNNNGTC 1 cut(s) 39
EciI GGCGGA 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 129
Eco47I GGWCC 3 cut(s) 60, 271, 508
Eco47III AGCGCT 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 37, 439
EcoT14I CCWWGG 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 34, 326
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 457
FatI CATG 2 cut(s) 30, 322
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 2 cut(s) 44, 405
GlaI GCGC 1 cut(s) 371
GluI GCNGC 1 cut(s) 420
HaeII RGCGCY 1 cut(s) 373
HaeIII GGCC 2 cut(s) 129, 268
HapII CCGG 1 cut(s) 269
HhaI GCGC 1 cut(s) 372
Hin1II CATG 2 cut(s) 34, 326
Hin6I GCGC 1 cut(s) 370
HinP1I GCGC 1 cut(s) 370
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 228, 463
Hpy188I TCNGA 4 cut(s) 27, 222, 337, 504
Hpy188III TCNNGA 3 cut(s) 116, 196, 379
Hpy8I GTNNAC 2 cut(s) 228, 463
HpyAV CCTTC 2 cut(s) 385, 527
HpyCH4III ACNGT 2 cut(s) 538, 593
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 3 cut(s) 92, 525, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 4 cut(s) 105, 334, 475, 501
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 2 cut(s) 34, 326
HspAI GCGC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 377
MabI ACCWGGT 1 cut(s) 37
MaeI CTAG 2 cut(s) 44, 405
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 4 cut(s) 496, 532, 564, 587
MluCI AATT 2 cut(s) 76, 392
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 580
MnlI CCTC 6 cut(s) 48, 51, 134, 183, 287, 626
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 4 cut(s) 132, 489, 549, 664
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 39, 441
MvaI CCWGG 2 cut(s) 39, 441
MwoI GCNNNNNNNGC 1 cut(s) 27
NlaIII CATG 2 cut(s) 34, 326
NlaIV GGNNCC 2 cut(s) 389, 510
NspV TTCGAA 1 cut(s) 167
PceI AGGCCT 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 392
PflFI GACNNNGTC 1 cut(s) 512
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 37, 439
PspGI CCWGG 2 cut(s) 37, 439
PspN4I GGNNCC 2 cut(s) 389, 510
PspPI GGNCC 3 cut(s) 60, 271, 508
PspPPI RGGWCCY 1 cut(s) 60
PsyI GACNNNGTC 1 cut(s) 512
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SaqAI TTAA 4 cut(s) 132, 489, 549, 664
SatI GCNGC 1 cut(s) 420
Sau96I GGNCC 3 cut(s) 60, 271, 508
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 39, 441
SetI ASST 7 cut(s) 40, 62, 138, 145, 255, 276, 549
SexAI ACCWGGT 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 167
SinI GGWCC 3 cut(s) 60, 271, 508
SpeI ACTAGT 1 cut(s) 404
Sse9I AATT 2 cut(s) 76, 392
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 4 cut(s) 72, 420, 437, 642
SspI AATATT 2 cut(s) 400, 655
SspMI CTAG 2 cut(s) 44, 405
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 37, 439
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 538, 593
TaiI ACGT 1 cut(s) 549
TaqI TCGA 1 cut(s) 167
TasI AATT 2 cut(s) 76, 392
TauI GCSGC 1 cut(s) 422
Tru1I TTAA 4 cut(s) 132, 489, 549, 664
Tru9I TTAA 4 cut(s) 132, 489, 549, 664
TscAI CASTG 2 cut(s) 317, 543
TspDTI ATGAA 1 cut(s) 588
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 2 cut(s) 317, 543
Tth111I GACNNNGTC 1 cut(s) 512
VpaK11BI GGWCC 3 cut(s) 60, 271, 508
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 2 cut(s) 44, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.