MD04G1192300.v1.1

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000345
Physical Location & Seq
Reverse (-)
28152886 .. 28154486
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1192300.v1.1.491

Sequence Viewer

Length: 573 bp
ATGTCATCACTATTATTCCATTTATACATACTCCTTGCAATATTAGTATTATACAATTTATACACACTCATTGCAATATTTCTTCTTCCAGTTTCCTCCGACTTCCCCACTCAAACTTTGGGTGCCACACCATACGAGTATCTCATGTTCACACAGCAGTGGCCGAAAGCTGTGAACAAAAATAGCCGATTGACCAAATTTACAATCCACGGCCTGTGGCCGTCAAATTTTTCCGGAAAAAAGTTGATTTGCACCGGAACAAATTTTAGTAAAAGCAAGATGCCGCCTGAGCTAGAAGAGGAACTCAATATCTCTTGGCCGGATGTCGAAAGGGGAAGGAATTGGGGCTTTTGGGAACACGAGTACAATAAGCACGGTACGTGTTCCGAAGATATCTTCGACCAGACCAAATACTTTGAGCTCGCCAACAAGATGAGGAAAACATTGGACATAGCTCAAATGCTTAAAAAAAGGAAAATCGTTCCAGGTAAAAATTGGGGTGTGATATCCACACAACCCATTTTACTTCTCACACACTCTTTTAATTTTCGACCGTCGGATCGGATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

191

Amino Acids

22.17

Weight (kDa)

9.3

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 45 - 165 1.3e-30 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 233
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 567
AcoI YGGCCR 3 cut(s) 161, 218, 317
AcsI RAATTY 3 cut(s) 197, 226, 262
AfaI GTAC 2 cut(s) 365, 379
AflIII ACRYGT 1 cut(s) 380
AjnI CCWGG 1 cut(s) 484
AleI CACNNNNGTG 1 cut(s) 157
AluBI AGCT 4 cut(s) 170, 292, 421, 455
AluI AGCT 4 cut(s) 170, 292, 421, 455
Alw21I GWGCWC 1 cut(s) 423
AlwI GGATC 1 cut(s) 567
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 4 cut(s) 161, 211, 218, 317
ApoI RAATTY 3 cut(s) 197, 226, 262
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 423
BauI CACGAG 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 423
BceAI ACGGC 2 cut(s) 205, 226
BciT130I CCWGG 1 cut(s) 486
BfaI CTAG 1 cut(s) 293
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 486
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 2 cut(s) 233, 254
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 69
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 2 cut(s) 328, 570
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 89
Bsh1285I CGRYCG 1 cut(s) 554
BshFI GGCC 4 cut(s) 163, 213, 220, 319
BshNI GGYRCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 3 cut(s) 234, 255, 320
BsnI GGCC 4 cut(s) 163, 213, 220, 319
Bsp1286I GDGCHC 1 cut(s) 423
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 1 cut(s) 284
BspANI GGCC 4 cut(s) 163, 213, 220, 319
BspCNI CTCAG 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 559
BssSI CACGAG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 377, 555
Bst6I CTCTTC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 2 cut(s) 328, 570
BstKTI GATC 1 cut(s) 562
BstMBI GATC 1 cut(s) 559
BstMCI CGRYCG 1 cut(s) 554
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BsuRI GGCC 4 cut(s) 163, 213, 220, 319
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 2 cut(s) 328, 570
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 423
Csp6I GTAC 2 cut(s) 364, 378
CviAII CATG 1 cut(s) 145
CviQI GTAC 2 cut(s) 364, 378
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
EaeI YGGCCR 3 cut(s) 161, 218, 317
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 423
Eco32I GATATC 2 cut(s) 394, 507
Eco53kI GAGCTC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 484
EcoRV GATATC 2 cut(s) 394, 507
EcoT38I GRGCYC 1 cut(s) 423
FaeI CATG 1 cut(s) 148
FaiI YATR 7 cut(s) 25, 29, 52, 61, 133, 146, 452
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 423
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 284
HaeIII GGCC 4 cut(s) 163, 213, 220, 319
HapII CCGG 3 cut(s) 234, 255, 320
Hin1II CATG 1 cut(s) 148
HpaII CCGG 3 cut(s) 234, 255, 320
Hpy166II GTNNAC 2 cut(s) 150, 175
Hpy188I TCNGA 4 cut(s) 100, 388, 559, 564
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 2 cut(s) 150, 175
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 1 cut(s) 330
HpyCH4III ACNGT 2 cut(s) 377, 555
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 3 cut(s) 38, 74, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 233
Kzo9I GATC 1 cut(s) 559
LpnPI CCDG 9 cut(s) 102, 227, 247, 268, 300, 333, 416, 471, 498
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 380
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 5 cut(s) 74, 77, 308, 388, 401
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 8 cut(s) 55, 197, 226, 262, 340, 493, 544, 568
MmeI TCCRAC 2 cut(s) 123, 537
MnlI CCTC 3 cut(s) 106, 292, 429
MroI TCCGGA 1 cut(s) 233
MseI TTAA 2 cut(s) 465, 543
MslI CAYNNNNRTG 1 cut(s) 157
MspI CCGG 3 cut(s) 234, 255, 320
MspR9I CCNGG 1 cut(s) 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 289
NdeII GATC 1 cut(s) 559
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 157
PkrI GCNGC 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 381
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 1 cut(s) 124
PsrI GAACNNNNNNTAC 2 cut(s) 131, 163
RsaI GTAC 2 cut(s) 365, 379
RsaNI GTAC 2 cut(s) 364, 378
RseI CAYNNNNRTG 1 cut(s) 157
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 465, 543
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 1 cut(s) 559
ScrFI CCNGG 1 cut(s) 486
SduI GDGCHC 1 cut(s) 423
SetI ASST 6 cut(s) 172, 294, 383, 423, 457, 490
SfaNI GCATC 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 8 cut(s) 55, 197, 226, 262, 340, 493, 544, 568
SsiI CCGC 1 cut(s) 284
SspI AATATT 2 cut(s) 42, 78
SspMI CTAG 1 cut(s) 293
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 484
TaaI ACNGT 2 cut(s) 377, 555
TaiI ACGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 327, 399, 550
TasI AATT 8 cut(s) 55, 197, 226, 262, 340, 493, 544, 568
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 465, 543
Tru9I TTAA 2 cut(s) 465, 543
TscAI CASTG 1 cut(s) 164
TspRI CASTG 1 cut(s) 164
XapI RAATTY 3 cut(s) 197, 226, 262
XcmI CCANNNNNNNNNTGG 2 cut(s) 115, 492
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.