Rh3DG080700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000345
Physical Location & Seq
Reverse (-)
6234631 .. 6237365
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG080700.1

Sequence Viewer

Length: 219 bp
ATGCCCCCAGCACCTACTACCACTCTTCACACTATATTCATGCCTGCCTACACAGGCCGGTGCTGGAGCAGCAATCAGTACGATTATCTTCAATTCGTGCAACAATATCCAATAACCTTCTGCTTTAATAATGAAGGTTGTACGTATTCCAGGCTGTTGTCTCTTCTACATCTTATGGTGATTGACTATCAACTGCCATATTATGATATTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.47

Weight (kDa)

5.25

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 80, 142
AgsI TTSAA 2 cut(s) 92, 213
AjnI CCWGG 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 165
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 190
BbvI GCAGC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 165
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 57
BseBI CCWGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 81
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 165
BsnI GGCC 1 cut(s) 57
BspANI GGCC 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 30, 168
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstSNI TACGTA 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 57
Csp6I GTAC 2 cut(s) 79, 141
CviAII CATG 1 cut(s) 40
CviJI RGCY 2 cut(s) 57, 154
CviKI_1 RGCY 2 cut(s) 57, 154
CviQI GTAC 2 cut(s) 79, 141
Eam1104I CTCTTC 2 cut(s) 30, 168
EarI CTCTTC 2 cut(s) 30, 168
Eco105I TACGTA 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 43
FaiI YATR 5 cut(s) 35, 41, 176, 199, 204
FatI CATG 1 cut(s) 39
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 85
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 58
Hin1II CATG 1 cut(s) 43
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 127, 128
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 1 cut(s) 43
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 7 cut(s) 21, 39, 49, 57, 71, 136, 163
Lsp1109I GCAGC 1 cut(s) 81
MaeII ACGT 1 cut(s) 143
MboII GAAGA 3 cut(s) 17, 80, 155
MluCI AATT 1 cut(s) 92
MseI TTAA 1 cut(s) 126
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 69
NlaIII CATG 1 cut(s) 43
PkrI GCNGC 1 cut(s) 71
Ppu21I YACGTR 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 149
RsaI GTAC 2 cut(s) 80, 142
RsaNI GTAC 2 cut(s) 79, 141
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 151
SetI ASST 4 cut(s) 16, 119, 139, 146
SgeI CNNG 9 cut(s) 20, 52, 56, 66, 70, 76, 109, 162, 163
SnaBI TACGTA 1 cut(s) 144
Sse9I AATT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 149
TaiI ACGT 1 cut(s) 146
TasI AATT 1 cut(s) 92
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 2 cut(s) 28, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.