Rw2G017590

ribonuclease T2 activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000345
Physical Location & Seq
Reverse (-)
21804555 .. 21805361
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017590.1

Sequence Viewer

Length: 654 bp
ATGAAGAATTCAAACTTCATTATCCTTCTATCAGTATATGCACTTGTACAAGTTCTCAACGTTTCAAATGCTGAACCCTACGAGTACATGCAATTTGTACTCCAGTACCCACCTGGAGTTTGCTATGACCAATCAAAAGGTCATTGCATCTCACCTCTCCCAACCAAGTTTCATGTACATGGAATATGGCCTTCTAACTTCTCCAATACACTTGTCCGTTGTGGGCACGCACTGAGGAATAACCCCTTTCATAAGGCGCAGATGACACCTCTGCAGACGGATTTGGGAAACTCATGGCCGTCCGTGTTAACACAAAACAACAATATGCAGTTTTGGGAGCATGAGTATAGACAGCACGGTGCATGTGCAGTAGAGTCAGGTGTACCACCTTTCACTCAAAGGTCCTACTTTGAGAAAGGACACCAGCTATGGAACCAATATGACATCCTTGCACTTGTAACCGCAATCCAAAAGAAAATCGGGAGTAACAATACTCCTTTAATCATGTGCAGGAGGACAGCCCTTGGTTACACACTAAAGGAAGTGATAATCTGTCTGGATCACCAGGCAACAAATGTGATAAGTTGCGCGCTTAATAATATTAGAAAAACAGATTGCCGAGATCCTTCGGGCAAGGTATACTATGTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

217

Amino Acids

24.69

Weight (kDa)

8.75

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 27 - 152 3.8e-25 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000345)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19170 FvH4_6g07690 FvH4_6g07740 FvH4_6g07750 FvH4_6g08450
malus_domestica MD01G1175200.v1.1 MD04G1192300.v1.1 MD10G1162000.v1.1 MD10G1162800.v1.1 MD15G1167100.v1.1 MD15G1167600.v1.1 MD15G1167800.v1.1
prunus_persica Prupe.6G319200_v2.0.a1 Prupe.8G219600_v2.0.a1
pyrus_communis pycom04g16990 pycom10g14020 pycom15g14910
rosa_chinensis RchiOBHm_Chr2g0110251 RchiOBHm_Chr2g0111581 RchiOBHm_Chr2g0111611 RchiOBHm_Chr2g0123571 RchiOBHm_Chr3g0455911 RchiOBHm_Chr3g0457381 RchiOBHm_Chr3g0457441 RchiOBHm_Chr3g0458491 RchiOBHm_Chr3g0491491 RchiOBHm_Chr3g0491511 RchiOBHm_Chr4g0398371 RchiOBHm_Chr6g0286961 RchiOBHm_Chr6g0293901
rosa_laevigata RLG00000012522 RLG00000015565 RLG00000017900 RLG00000017902 RLG00000017904 RLG00000017906 RLG00000017908 RLG00000017910 RLG00000017912 RLG00000017914 RLG00000024924 RLG00000025153 RLG00000025197 RLG00000025222 RLG00000025224 RLG00000025227 RLG00000025231 RLG00000025323
rosa_multiflora Rmu_sc0004094.1_g000043 Rmu_sc0005442.1_g000003 Rmu_sc0005791.1_g000016 Rmu_sc0006034.1_g000014 Rmu_sc0008973.1_g000002 Rmu_sc0008973.1_g000014 Rmu_sc0008973.1_g000018 Rmu_sc0013809.1_g000009 Rmu_ssc0000091.1_g000008
rosa_roxburghii Rroxscaffold_2G00132220 Rroxscaffold_6G00418220 Rroxscaffold_6G00418550 Rroxscaffold_6G00421070
rosa_rugosa Rorug02G0174900 Rorug02G0461000 Rorug03G0020400 Rorug03G0028600 Rorug03G0029200 Rorug06G0126000 Rorug06G0185700
rosa_samantha Rh2AG218200 Rh2AG218400 Rh2AG227600 Rh2AG305200 Rh2BG239900 Rh2BG313300 Rh2CG220000 Rh2CG220300 Rh2CG291400 Rh2DG224000 Rh2DG224200 Rh2DG329100 Rh3AG071200 Rh3AG080700 Rh3AG081000 Rh3AG298900 Rh3BG073600 Rh3BG082600 Rh3BG083100 Rh3CG072200 Rh3CG082800 Rh3CG083300 Rh3CG331700 Rh3DG074900 Rh3DG080700 Rh3DG084000 Rh3DG084500 Rh3DG091600 Rh3DG333300 Rh4AG085900 Rh4CG093600 Rh4DG077700 Rh6AG352300 Rh6CG366500
rosa_wichuraiana Rw2G017590 Rw3G005760 Rw3G006100 Rw3G007480 Rw3G026400 Rw4G007170 Rw6G030670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 639
AccII CGCG 1 cut(s) 590
AciI CCGC 1 cut(s) 462
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 567, 617
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 6 cut(s) 48, 86, 99, 107, 177, 384
AgsI TTSAA 2 cut(s) 12, 66
AjnI CCWGG 2 cut(s) 112, 564
AluBI AGCT 2 cut(s) 427, 650
AluI AGCT 2 cut(s) 427, 650
AlwI GGATC 2 cut(s) 567, 617
AoxI GGCC 2 cut(s) 188, 296
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 3 cut(s) 259, 590, 592
AspS9I GGNCC 1 cut(s) 402
AsuHPI GGTGA 2 cut(s) 144, 554
AvaII GGWCC 1 cut(s) 402
BaeGI GKGCMC 1 cut(s) 228
BaeI ACNNNNGTAYC 2 cut(s) 89, 122
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 2 cut(s) 114, 566
BfmI CTRYAG 1 cut(s) 272
Bme1390I CCNGG 2 cut(s) 114, 566
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 434
BmrFI CCNGG 2 cut(s) 114, 566
BmsI GCATC 1 cut(s) 156
BpmI CTGGAG 2 cut(s) 86, 135
BsaJI CCNNGG 1 cut(s) 523
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bse1I ACTGG 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 2 cut(s) 114, 566
BseDI CCNNGG 1 cut(s) 523
BseGI GGATG 1 cut(s) 444
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 103
BsePI GCGCGC 1 cut(s) 588
BseSI GKGCMC 1 cut(s) 228
BsgI GTGCAG 2 cut(s) 387, 529
Bsh1236I CGCG 1 cut(s) 590
BshFI GGCC 2 cut(s) 190, 298
BsnI GGCC 2 cut(s) 190, 298
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1407I TGTACA 2 cut(s) 46, 175
Bsp143I GATC 2 cut(s) 559, 622
BspACI CCGC 1 cut(s) 462
BspANI GGCC 2 cut(s) 190, 298
BspCNI CTCAG 1 cut(s) 225
BspFNI CGCG 1 cut(s) 590
BspLI GGNNCC 1 cut(s) 434
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 2 cut(s) 567, 617
BsrDI GCAATG 1 cut(s) 142
BsrGI TGTACA 2 cut(s) 46, 175
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 523
BssHII GCGCGC 1 cut(s) 588
BssMI GATC 2 cut(s) 559, 622
BssNAI GTATAC 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 523
Bst1107I GTATAC 1 cut(s) 640
Bst2UI CCWGG 2 cut(s) 114, 566
Bst4CI ACNGT 1 cut(s) 359
BstAUI TGTACA 2 cut(s) 46, 175
BstC8I GCNNGC 2 cut(s) 228, 590
BstDEI CTNAG 2 cut(s) 233, 651
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 3 cut(s) 259, 590, 592
BstKTI GATC 2 cut(s) 562, 625
BstMBI GATC 2 cut(s) 559, 622
BstNI CCWGG 2 cut(s) 114, 566
BstNSI RCATGY 2 cut(s) 91, 366
BstSCI CCNGG 2 cut(s) 112, 564
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 1 cut(s) 590
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BstZ17I GTATAC 1 cut(s) 640
BsuRI GGCC 2 cut(s) 190, 298
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 228, 590
CfoI GCGC 3 cut(s) 259, 590, 592
Cfr13I GGNCC 1 cut(s) 402
Csp6I GTAC 6 cut(s) 47, 85, 98, 106, 176, 383
CviAII CATG 7 cut(s) 88, 173, 179, 294, 341, 363, 505
CviJI RGCY 5 cut(s) 190, 298, 427, 521, 650
CviKI_1 RGCY 5 cut(s) 190, 298, 427, 521, 650
CviQI GTAC 6 cut(s) 47, 85, 98, 106, 176, 383
DdeI CTNAG 2 cut(s) 233, 651
DpnI GATC 2 cut(s) 561, 624
DpnII GATC 2 cut(s) 559, 622
EaeI YGGCCR 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 112, 564
EcoT14I CCWWGG 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 7 cut(s) 91, 176, 182, 297, 344, 366, 508
FatI CATG 7 cut(s) 87, 172, 178, 293, 340, 362, 504
FblI GTMKAC 1 cut(s) 639
FokI GGATG 1 cut(s) 431
GlaI GCGC 3 cut(s) 258, 589, 591
GsuI CTGGAG 2 cut(s) 86, 135
HaeIII GGCC 2 cut(s) 190, 298
HhaI GCGC 3 cut(s) 259, 590, 592
Hin1II CATG 7 cut(s) 91, 176, 182, 297, 344, 366, 508
Hin6I GCGC 3 cut(s) 257, 588, 590
HinP1I GCGC 3 cut(s) 257, 588, 590
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 1 cut(s) 374
HpaI GTTAAC 1 cut(s) 309
HphI GGTGA 2 cut(s) 144, 554
Hpy166II GTNNAC 3 cut(s) 309, 383, 640
Hpy188III TCNNGA 2 cut(s) 481, 557
Hpy8I GTNNAC 3 cut(s) 309, 383, 640
HpyAV CCTTC 3 cut(s) 35, 201, 636
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 9 cut(s) 41, 91, 147, 274, 328, 362, 368, 452, 510
HpyF3I CTNAG 2 cut(s) 233, 651
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 7 cut(s) 91, 176, 182, 297, 344, 366, 508
HspAI GCGC 3 cut(s) 257, 588, 590
KspAI GTTAAC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 559, 622
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 9 cut(s) 99, 116, 126, 363, 437, 496, 542, 551, 578
LweI GCATC 1 cut(s) 156
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 457, 485, 527
MalI GATC 2 cut(s) 561, 624
MboI GATC 2 cut(s) 559, 622
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 2 cut(s) 7, 92
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 4 cut(s) 165, 228, 279, 507
MseI TTAA 3 cut(s) 308, 500, 594
MslI CAYNNNNRTG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 114, 566
MvaI CCWGG 2 cut(s) 114, 566
MvnI CGCG 1 cut(s) 590
NdeII GATC 2 cut(s) 559, 622
NlaIII CATG 7 cut(s) 91, 176, 182, 297, 344, 366, 508
NlaIV GGNNCC 1 cut(s) 434
NmeAIII GCCGAG 1 cut(s) 644
NspI RCATGY 2 cut(s) 91, 366
PauI GCGCGC 1 cut(s) 588
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 402
Psp6I CCWGG 2 cut(s) 112, 564
PspGI CCWGG 2 cut(s) 112, 564
PspN4I GGNNCC 1 cut(s) 434
PspPI GGNCC 1 cut(s) 402
PspPPI RGGWCCY 1 cut(s) 402
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 1 cut(s) 622
PteI GCGCGC 1 cut(s) 588
RsaI GTAC 6 cut(s) 48, 86, 99, 107, 177, 384
RsaNI GTAC 6 cut(s) 47, 85, 98, 106, 176, 383
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 3 cut(s) 308, 500, 594
Sau3AI GATC 2 cut(s) 559, 622
Sau96I GGNCC 1 cut(s) 402
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 114, 566
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 7, 92
SsiI CCGC 1 cut(s) 462
SspI AATATT 1 cut(s) 601
StyD4I CCNGG 2 cut(s) 112, 564
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 63
TasI AATT 2 cut(s) 7, 92
TatI WGTACW 4 cut(s) 46, 84, 97, 175
Tru1I TTAA 3 cut(s) 308, 500, 594
Tru9I TTAA 3 cut(s) 308, 500, 594
TscAI CASTG 1 cut(s) 237
TspDTI ATGAA 4 cut(s) 7, 17, 161, 239
TspGWI ACGGA 3 cut(s) 206, 292, 293
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 1 cut(s) 7
XceI RCATGY 2 cut(s) 91, 366
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.