FvH4_6g10180

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000358
Physical Location & Seq
Forward (+)
6055938 .. 6058047
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10180.t1

Sequence Viewer

Length: 723 bp
ATGCGTGTCTTGGAGGAGCTGGATTTGAGTTACTGTTGCCAGCTAACTGATGTTGGAGGTCAGGCAATCTCCACAATTCGAACCCTCAAGAAGTTGAAGTTGGTGGAAGCAATATTCCTAACAGAAAGAACGTTCGTGGCTATTGCTAAGAATTGCATAAACTTGGAGGTGCTTGATCTAGCTGGTTGTAGAGGGATCACAACAACCTGTATTGATGCATTTTCGGGTCAAAAGTGCTTGCGATTCCTTAATCTACAATGTCGTTCGTGTGATGATTTAAGAGGATCTGCTTTCGAAAGCCTAGCACTTGGATGCCCTTCACTGGAGACGATTGTGGTGCACGAAAGTTTGAGAGAAAGGCTGTTGCAGGAAATGCAAGAGAGTACTGAGATATGTGGTCATGGGGGATGGAGAAGGGCCTCGGTATGCCCAGATGCTAGTTTTACTGGGACAGATGCAGGGGATACAATTTCTCCCTTGCAGATTTTGTGTAATGGAGCAAACGAGTCTAAATTTCAGGAGCTGGTCCAAAATATAGAGATATGTCGTCTTTACGAACTTGATACTGTTAGCTCAGACATTATGAAGATTTCTGGGGTGTACCATTGGAAGGATGGTAGGAAAGGTTGTGGAGTTTTCTGGCTTCAGCAAGCCCGAGATGAAGTTCTCCTTACCAGGGTTGCTCAGCATTTACTTGATTCTGTTGGAAAGTCAAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

241

Amino Acids

26.6

Weight (kDa)

5.32

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleopor_Nup85 PF07575 174 - 235 4e-12 Nup85 Nucleoporin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 131
AclWI GGATC 2 cut(s) 203, 292
AcsI RAATTY 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 629
AfaI GTAC 2 cut(s) 385, 602
AfiI CCNNNNNNNGG 3 cut(s) 322, 610, 676
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 674
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 5 cut(s) 19, 43, 182, 523, 573
AluI AGCT 5 cut(s) 19, 43, 182, 523, 573
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 320
Alw44I GTGCAC 1 cut(s) 338
AlwI GGATC 2 cut(s) 203, 292
AlwNI CAGNNNCTG 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 654
AoxI GGCC 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 512
AspS9I GGNCC 2 cut(s) 417, 526
AsuII TTCGAA 2 cut(s) 79, 294
AvaI CYCGRG 1 cut(s) 654
AvaII GGWCC 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BccI CCATC 2 cut(s) 402, 608
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BciT130I CCWGG 1 cut(s) 676
BciVI GTATCC 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 3 cut(s) 179, 302, 438
BfuI GTATCC 1 cut(s) 457
BlpI GCTNAGC 1 cut(s) 684
BmcAI AGTACT 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 676
Bme18I GGWCC 1 cut(s) 526
BmeT110I CYCGRG 1 cut(s) 654
BmgT120I GGNCC 2 cut(s) 417, 526
BmrFI CCNGG 1 cut(s) 676
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 4 cut(s) 205, 302, 424, 445
BmuI ACTGGG 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 344
Bpu1102I GCTNAGC 1 cut(s) 684
Bpu14I TTCGAA 2 cut(s) 79, 294
BpuEI CTTGAG 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 420, 675
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 610, 676
Bse1I ACTGG 2 cut(s) 327, 451
BseBI CCWGG 1 cut(s) 676
BseDI CCNNGG 2 cut(s) 420, 675
BseGI GGATG 3 cut(s) 317, 413, 619
BseLI CCNNNNNNNGG 3 cut(s) 322, 610, 676
BseMII CTCAG 3 cut(s) 378, 588, 698
BseNI ACTGG 2 cut(s) 327, 451
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 342
BshFI GGCC 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 342
BsiHKCI CYCGRG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 3 cut(s) 322, 610, 676
BsmAI GTCTC 1 cut(s) 320
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 463
BsnI GGCC 1 cut(s) 419
BsoBI CYCGRG 1 cut(s) 654
Bsp119I TTCGAA 2 cut(s) 79, 294
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 3 cut(s) 175, 195, 284
Bsp1720I GCTNAGC 1 cut(s) 684
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 3 cut(s) 379, 587, 697
BspPI GGATC 2 cut(s) 203, 292
BspT104I TTCGAA 2 cut(s) 79, 294
BsrI ACTGG 2 cut(s) 327, 451
BssECI CCNNGG 2 cut(s) 420, 675
BssMI GATC 3 cut(s) 175, 195, 284
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 2 cut(s) 35, 568
BstAPI GCANNNNNTGC 1 cut(s) 373
BstBI TTCGAA 2 cut(s) 79, 294
BstC8I GCNNGC 3 cut(s) 41, 239, 651
BstDEI CTNAG 4 cut(s) 147, 387, 574, 684
BstF5I GGATG 3 cut(s) 317, 413, 619
BstKTI GATC 3 cut(s) 178, 198, 287
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 3 cut(s) 175, 195, 284
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNI CCWGG 1 cut(s) 676
BstSCI CCNGG 1 cut(s) 674
BstSLI GKGCMC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 3 cut(s) 317, 413, 619
BtsIMutI CAGTG 1 cut(s) 320
Cac8I GCNNGC 3 cut(s) 41, 239, 651
CaiI CAGNNNCTG 1 cut(s) 523
Cfr13I GGNCC 2 cut(s) 417, 526
Csp6I GTAC 2 cut(s) 384, 601
CviAII CATG 1 cut(s) 401
CviQI GTAC 2 cut(s) 384, 601
DdeI CTNAG 4 cut(s) 147, 387, 574, 684
DpnI GATC 3 cut(s) 177, 197, 286
DpnII GATC 3 cut(s) 175, 195, 284
Eco47I GGWCC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 629
Eco88I CYCGRG 1 cut(s) 654
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 674
EcoT22I ATGCAT 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 1 cut(s) 404
FaiI YATR 7 cut(s) 158, 394, 402, 427, 536, 544, 584
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 1 cut(s) 463
FatI CATG 1 cut(s) 400
FokI GGATG 3 cut(s) 324, 420, 626
FspBI CTAG 3 cut(s) 179, 302, 438
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 419
Hin1II CATG 1 cut(s) 404
HinfI GANTC 3 cut(s) 243, 506, 698
Hpy166II GTNNAC 2 cut(s) 340, 601
Hpy188I TCNGA 2 cut(s) 577, 722
Hpy188III TCNNGA 2 cut(s) 88, 518
Hpy8I GTNNAC 2 cut(s) 340, 601
HpyAV CCTTC 3 cut(s) 327, 408, 604
HpyCH4III ACNGT 2 cut(s) 35, 568
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 7 cut(s) 156, 218, 340, 367, 376, 458, 481
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 4 cut(s) 147, 387, 574, 684
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 404
Kzo9I GATC 3 cut(s) 175, 195, 284
LmnI GCTCC 3 cut(s) 16, 497, 520
LweI GCATC 4 cut(s) 205, 302, 424, 445
MaeI CTAG 3 cut(s) 179, 302, 438
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 177, 197, 286
MboI GATC 3 cut(s) 175, 195, 284
MboII GAAGA 1 cut(s) 598
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 4 cut(s) 75, 151, 468, 512
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 2 cut(s) 34, 685
MnlI CCTC 7 cut(s) 7, 50, 95, 160, 185, 275, 430
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 2 cut(s) 249, 278
MslI CAYNNNNRTG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 676
MvaI CCWGG 1 cut(s) 676
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 3 cut(s) 175, 195, 284
NlaIII CATG 1 cut(s) 404
NsiI ATGCAT 1 cut(s) 220
NspV TTCGAA 2 cut(s) 79, 294
PfeI GAWTC 2 cut(s) 243, 698
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
Psp1406I AACGTT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 674
PspGI CCWGG 1 cut(s) 674
PspPI GGNCC 2 cut(s) 417, 526
PstNI CAGNNNCTG 1 cut(s) 523
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 2 cut(s) 385, 602
RsaNI GTAC 2 cut(s) 384, 601
RseI CAYNNNNRTG 1 cut(s) 310
SaqAI TTAA 2 cut(s) 249, 278
Sau3AI GATC 3 cut(s) 175, 195, 284
Sau96I GGNCC 2 cut(s) 417, 526
ScaI AGTACT 1 cut(s) 385
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 1 cut(s) 676
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 4 cut(s) 205, 302, 424, 445
SfuI TTCGAA 2 cut(s) 79, 294
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 4 cut(s) 75, 151, 468, 512
SspI AATATT 1 cut(s) 114
SspMI CTAG 3 cut(s) 179, 302, 438
StyD4I CCNGG 1 cut(s) 674
TaaI ACNGT 2 cut(s) 35, 568
TaiI ACGT 1 cut(s) 134
TaqI TCGA 2 cut(s) 79, 294
TasI AATT 4 cut(s) 75, 151, 468, 512
TatI WGTACW 1 cut(s) 383
TfiI GAWTC 2 cut(s) 243, 698
Tru1I TTAA 2 cut(s) 249, 278
Tru9I TTAA 2 cut(s) 249, 278
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 599, 675
TspRI CASTG 1 cut(s) 327
VneI GTGCAC 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XspI CTAG 3 cut(s) 179, 302, 438
ZrmI AGTACT 1 cut(s) 385
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.