Rmu_sc0001639.1_g000028

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001639.1
OG0000358
Physical Location & Seq
Forward (+)
119020 .. 120066
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001639.1_g000028.1.cds

Sequence Viewer

Length: 1047 bp
atggatgccctatgtaacgatgaactaggcctaatcttgaactgggttgacagaaaatcattctctcaggtctgtaagcaatggtgggtagcggagggtcagaaccgatcatgcattcgtgttctcaaactcgattatctccctcgattactaactagatttccaaacttagtcacattccaaacatccgtgtctataagcaacgctgacctcgaattattagcccaaagatgtcccaaacttgaggtcatcgaccttacaacaccggtgcggtcctttagtgtagttgggacccgaggtctatgcacactagcaaataagtgtcccagattatccaaggttgtgcttcgtgggagatatcataagattgaggatgatggaattgtgtctttcataactatagcggataacttgaagcatttgaatttggaattgtgtacgctggtttctgacaaaacccttgaagcaattgggtcctcaagttgtccgattaccgttttgaaattggaaagctgtgacattacggattgtggattgagatttttgacaaatgggccttgctcaaaaaccataaaggaattggtccttaaggggtgtcatggaatcactgattctggggtctcactcttgcagaagatgtgtgtcttggaggagctaaatttgactcattgtcggcgagtcactgaagttggaggcgtggcgatctccgcaattctaaccctcaagaaattgaaccttgcttggggccccaaagtcacagaccgcaccattctcgctctcgctgagaattgcctcaacttagagacgcttagtttgagaggtaatggattcgtgaccggagttggtgttcgtgcatttttaagtcacaaacgcttacaatcccttgatctacgctacattcggattcatgttagtggatctgatttggaagacctagtgcttgcatgcccatcattgaagtctatactggtagagggtggatggagaaaaaggttgtttcgtgagatgcaagaaagcactcttagcagattcgtgaggttcaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

348

Amino Acids

38.77

Weight (kDa)

8.92

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 92, 271, 404, 708, 763
AclWI GGATC 1 cut(s) 925
AcsI RAATTY 2 cut(s) 424, 658
AcuI CTGAAG 1 cut(s) 705
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 1 cut(s) 742
AflII CTTAAG 1 cut(s) 587
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 8 cut(s) 40, 415, 424, 464, 502, 733, 958, 1042
AhdI GACNNNNNGTC 2 cut(s) 297, 669
AloI GAACNNNNNNTCC 2 cut(s) 831, 863
AluBI AGCT 2 cut(s) 513, 655
AluI AGCT 2 cut(s) 513, 655
Alw26I GTCTC 2 cut(s) 625, 797
AlwI GGATC 1 cut(s) 925
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 3 cut(s) 28, 554, 745
ApaI GGGCCC 1 cut(s) 749
ApoI RAATTY 2 cut(s) 424, 658
ArsI GACNNNNNNTTYG 4 cut(s) 231, 263, 796, 828
AsiGI ACCGGT 1 cut(s) 265
AspS9I GGNCC 7 cut(s) 273, 291, 474, 554, 583, 745, 746
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 4 cut(s) 273, 291, 474, 583
BaeGI GKGCMC 1 cut(s) 749
BanII GRGCYC 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 936
BccI CCATC 3 cut(s) 371, 958, 975
BcgI CGANNNNNNTGC 4 cut(s) 285, 319, 754, 788
BcoDI GTCTC 2 cut(s) 625, 797
BfaI CTAG 4 cut(s) 26, 156, 311, 935
BfmI CTRYAG 1 cut(s) 399
BfrI CTTAAG 1 cut(s) 587
Bme18I GGWCC 4 cut(s) 273, 291, 474, 583
BmeRI GACNNNNNGTC 2 cut(s) 297, 669
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 7 cut(s) 273, 291, 474, 554, 583, 745, 746
BmiI GGNNCC 6 cut(s) 292, 293, 475, 746, 747, 748
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 996
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 936
BpuEI CTTGAG 3 cut(s) 263, 463, 707
BsaI GGTCTC 1 cut(s) 625
BsaJI CCNNGG 2 cut(s) 295, 336
BsaWI WCCGGW 2 cut(s) 265, 836
BsaXI ACNNNNNCTCC 2 cut(s) 831, 861
Bsc4I CCNNNNNNNGG 1 cut(s) 742
Bse118I RCCGGY 1 cut(s) 265
Bse1I ACTGG 2 cut(s) 47, 972
Bse3DI GCAATG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 295, 336
BseGI GGATG 4 cut(s) 10, 185, 379, 986
BseLI CCNNNNNNNGG 1 cut(s) 742
BseMI GCAATG 1 cut(s) 86
BseMII CTCAG 2 cut(s) 80, 774
BseNI ACTGG 2 cut(s) 47, 972
BseRI GAGGAG 1 cut(s) 665
BseSI GKGCMC 1 cut(s) 749
BshFI GGCC 3 cut(s) 30, 556, 747
BshTI ACCGGT 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 2 cut(s) 266, 837
BslFI GGGAC 3 cut(s) 219, 304, 309
BslI CCNNNNNNNGG 1 cut(s) 742
BsmAI GTCTC 2 cut(s) 625, 797
BsmBI CGTCTC 1 cut(s) 797
BsmFI GGGAC 3 cut(s) 219, 304, 309
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 3 cut(s) 30, 556, 747
Bso31I GGTCTC 1 cut(s) 625
BsoBI CYCGRG 1 cut(s) 294
Bsp120I GGGCCC 1 cut(s) 745
Bsp1286I GDGCHC 1 cut(s) 749
Bsp143I GATC 4 cut(s) 107, 702, 886, 917
BspACI CCGC 5 cut(s) 92, 271, 404, 708, 763
BspANI GGCC 3 cut(s) 30, 556, 747
BspCNI CTCAG 2 cut(s) 79, 775
BspLI GGNNCC 6 cut(s) 292, 293, 475, 746, 747, 748
BspPI GGATC 1 cut(s) 925
BspTI CTTAAG 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 625
BsrDI GCAATG 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 265
BsrI ACTGG 2 cut(s) 47, 972
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 295, 336
BssMI GATC 4 cut(s) 107, 702, 886, 917
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 496
BstAFI CTTAAG 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 942, 946
BstDEI CTNAG 6 cut(s) 66, 169, 783, 799, 809, 1022
BstF5I GGATG 4 cut(s) 10, 185, 379, 986
BstKTI GATC 4 cut(s) 110, 705, 889, 920
BstMAI GTCTC 2 cut(s) 625, 797
BstMBI GATC 4 cut(s) 107, 702, 886, 917
BstMWI GCNNNNNNNGC 2 cut(s) 707, 1023
BstNSI RCATGY 1 cut(s) 948
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 749
BstV2I GAAGAC 1 cut(s) 936
BstX2I RGATCY 1 cut(s) 917
BstYI RGATCY 1 cut(s) 917
BsuRI GGCC 3 cut(s) 30, 556, 747
BtsCI GGATG 4 cut(s) 10, 185, 379, 986
BtsIMutI CAGTG 2 cut(s) 606, 681
Cac8I GCNNGC 2 cut(s) 942, 946
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 7 cut(s) 273, 291, 474, 554, 583, 745, 746
CseI GACGC 1 cut(s) 814
Csp6I GTAC 1 cut(s) 438
CspAI ACCGGT 1 cut(s) 265
CviAII CATG 4 cut(s) 111, 599, 908, 945
CviJI RGCY 6 cut(s) 30, 224, 513, 556, 655, 747
CviKI_1 RGCY 6 cut(s) 30, 224, 513, 556, 655, 747
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 6 cut(s) 66, 169, 783, 799, 809, 1022
DpnI GATC 4 cut(s) 109, 704, 888, 919
DpnII GATC 4 cut(s) 107, 702, 886, 917
DriI GACNNNNNGTC 2 cut(s) 297, 669
Eam1105I GACNNNNNGTC 2 cut(s) 297, 669
Eco130I CCWWGG 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 749
Eco31I GGTCTC 1 cut(s) 625
Eco32I GATATC 1 cut(s) 359
Eco47I GGWCC 4 cut(s) 273, 291, 474, 583
Eco57I CTGAAG 1 cut(s) 705
Eco88I CYCGRG 1 cut(s) 294
EcoO109I RGGNCCY 4 cut(s) 291, 474, 745, 746
EcoRV GATATC 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 749
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 797
FaeI CATG 4 cut(s) 114, 602, 911, 948
FaqI GGGAC 3 cut(s) 219, 304, 309
FatI CATG 4 cut(s) 110, 598, 907, 944
FokI GGATG 4 cut(s) 17, 172, 386, 993
FriOI GRGCYC 1 cut(s) 749
FspBI CTAG 4 cut(s) 26, 156, 311, 935
HaeIII GGCC 3 cut(s) 30, 556, 747
HapII CCGG 2 cut(s) 266, 837
HgaI GACGC 1 cut(s) 814
Hin1II CATG 4 cut(s) 114, 602, 911, 948
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 7 cut(s) 603, 611, 664, 678, 828, 904, 1029
HpaII CCGG 2 cut(s) 266, 837
Hpy166II GTNNAC 2 cut(s) 49, 438
Hpy188I TCNGA 5 cut(s) 102, 451, 489, 903, 922
Hpy188III TCNNGA 5 cut(s) 37, 724, 832, 1001, 1033
Hpy8I GTNNAC 2 cut(s) 49, 438
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4V TGCA 6 cut(s) 114, 306, 631, 854, 944, 1009
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 1023
HpyF3I CTNAG 6 cut(s) 66, 169, 783, 799, 809, 1022
Hsp92II CATG 4 cut(s) 114, 602, 911, 948
KflI GGGWCCC 1 cut(s) 291
Kzo9I GATC 4 cut(s) 107, 702, 886, 917
LmnI GCTCC 1 cut(s) 652
LpnPI CCDG 8 cut(s) 28, 53, 279, 340, 428, 600, 850, 953
LweI GCATC 1 cut(s) 996
MaeI CTAG 4 cut(s) 26, 156, 311, 935
MaeIII GTNAC 7 cut(s) 14, 172, 515, 679, 754, 832, 863
MalI GATC 4 cut(s) 109, 704, 888, 919
MboI GATC 4 cut(s) 107, 702, 886, 917
MboII GAAGA 2 cut(s) 646, 941
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 1 cut(s) 749
MlyI GAGTC 2 cut(s) 658, 687
MmeI TCCRAC 1 cut(s) 670
Mph1103I ATGCAT 1 cut(s) 116
MseI TTAA 2 cut(s) 588, 860
MslI CAYNNNNRTG 1 cut(s) 912
MspCI CTTAAG 1 cut(s) 587
MspI CCGG 2 cut(s) 266, 837
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 707, 1023
NdeII GATC 4 cut(s) 107, 702, 886, 917
NlaIII CATG 4 cut(s) 114, 602, 911, 948
NlaIV GGNNCC 6 cut(s) 292, 293, 475, 746, 747, 748
NmuCI GTSAC 6 cut(s) 172, 515, 679, 754, 832, 863
NsiI ATGCAT 1 cut(s) 116
NspI RCATGY 1 cut(s) 948
PaeI GCATGC 1 cut(s) 948
PceI AGGCCT 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 5 cut(s) 603, 611, 828, 904, 1029
PinAI ACCGGT 1 cut(s) 265
PleI GAGTC 2 cut(s) 658, 686
PpsI GAGTC 2 cut(s) 658, 686
PpuMI RGGWCCY 2 cut(s) 291, 474
Psp5II RGGWCCY 2 cut(s) 291, 474
PspN4I GGNNCC 6 cut(s) 292, 293, 475, 746, 747, 748
PspOMI GGGCCC 1 cut(s) 745
PspPI GGNCC 7 cut(s) 273, 291, 474, 554, 583, 745, 746
PspPPI RGGWCCY 2 cut(s) 291, 474
PsuI RGATCY 1 cut(s) 917
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
RseI CAYNNNNRTG 1 cut(s) 912
SaqAI TTAA 2 cut(s) 588, 860
Sau3AI GATC 4 cut(s) 107, 702, 886, 917
Sau96I GGNCC 7 cut(s) 273, 291, 474, 554, 583, 745, 746
SchI GAGTC 2 cut(s) 658, 687
SduI GDGCHC 1 cut(s) 749
SfaNI GCATC 1 cut(s) 996
SfcI CTRYAG 1 cut(s) 399
SgrAI CRCCGGYG 1 cut(s) 265
SinI GGWCC 4 cut(s) 273, 291, 474, 583
SmiMI CAYNNNNRTG 1 cut(s) 912
SmlI CTYRAG 4 cut(s) 242, 478, 587, 722
SmoI CTYRAG 4 cut(s) 242, 478, 587, 722
SphI GCATGC 1 cut(s) 948
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 5 cut(s) 92, 271, 404, 708, 763
SspMI CTAG 4 cut(s) 26, 156, 311, 935
StuI AGGCCT 1 cut(s) 30
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 496
TaqI TCGA 4 cut(s) 132, 145, 213, 252
TfiI GAWTC 5 cut(s) 603, 611, 828, 904, 1029
Tru1I TTAA 2 cut(s) 588, 860
Tru9I TTAA 2 cut(s) 588, 860
TscAI CASTG 2 cut(s) 613, 688
TseFI GTSAC 6 cut(s) 172, 515, 679, 754, 832, 863
Tsp45I GTSAC 6 cut(s) 172, 515, 679, 754, 832, 863
TspDTI ATGAA 3 cut(s) 36, 382, 896
TspGWI ACGGA 2 cut(s) 178, 539
TspRI CASTG 2 cut(s) 613, 688
Vha464I CTTAAG 1 cut(s) 587
VpaK11BI GGWCC 4 cut(s) 273, 291, 474, 583
XapI RAATTY 2 cut(s) 424, 658
XceI RCATGY 1 cut(s) 948
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XspI CTAG 4 cut(s) 26, 156, 311, 935
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.