Rh6BG440200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000358
Physical Location & Seq
Forward (+)
65833577 .. 65834041
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG440200.1

Sequence Viewer

Length: 465 bp
ATGGAGGGTCTGAGCCGATCGTCACTCCGAGTTCTCAACATGGATGATCTTCCTCGATTACTAGCTAGGTATCCAAACTTAGCCACATTCGAAACACCCAAGAGAATGAGCAATGCCGATCTCGCATTGGTGGCCCAAACTGGAGGCCTTCAAACTATTGAGGAAATTGAAATGCAAGACATCCGCGCACTGGTACGATATGAATTAGAATTAGCGATCTCTGTTGATGAAGTAAGGGAGATATTACGGGTGGTTCATCAAGTTGGGGACGAAGGTTTGTGCGCTTTGGCAAATGGGTGTCCCAAATTGTCCGAGATTGTGCTTAAGAGGAGAAGGGTTGGGATGGTTGGAATCATGGCCATGATCACTTCAGCAGCACATCACTTGACTCATTTGGATTTGGAACATTGTTCTTCGGTTTCGGACCAAGCCCTTGAAGCAATTGGGTCCCCATTCGCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

154

Amino Acids

16.98

Weight (kDa)

5.33

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 186, 458
AciI CCGC 1 cut(s) 184
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 190
AflII CTTAAG 1 cut(s) 323
AgsI TTSAA 3 cut(s) 152, 170, 437
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AoxI GGCC 3 cut(s) 132, 145, 357
ApeKI GCWGC 1 cut(s) 374
AspLEI GCGC 2 cut(s) 188, 284
AspS9I GGNCC 3 cut(s) 133, 424, 447
AsuII TTCGAA 1 cut(s) 90
AvaII GGWCC 2 cut(s) 424, 447
BalI TGGCCA 1 cut(s) 359
BbvI GCAGC 1 cut(s) 386
BccI CCATC 1 cut(s) 337
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 1 cut(s) 363
BfaI CTAG 2 cut(s) 62, 66
BfrI CTTAAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme18I GGWCC 2 cut(s) 424, 447
BmgT120I GGNCC 3 cut(s) 133, 424, 447
BmiI GGNNCC 2 cut(s) 448, 449
BpmI CTGGAG 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 145, 195
Bse3DI GCAATG 1 cut(s) 118
BseGI GGATG 3 cut(s) 49, 180, 348
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 118
BseNI ACTGG 2 cut(s) 145, 195
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 186, 458
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 3 cut(s) 134, 147, 359
BsiEI CGRYCG 1 cut(s) 20
BslFI GGGAC 3 cut(s) 281, 285, 433
BslI CCNNNNNNNGG 1 cut(s) 190
BsmFI GGGAC 3 cut(s) 281, 285, 433
BsnI GGCC 3 cut(s) 134, 147, 359
Bsp119I TTCGAA 1 cut(s) 90
Bsp143I GATC 5 cut(s) 17, 46, 118, 216, 363
BspACI CCGC 1 cut(s) 184
BspANI GGCC 3 cut(s) 134, 147, 359
BspFNI CGCG 2 cut(s) 186, 458
BspLI GGNNCC 2 cut(s) 448, 449
BspT104I TTCGAA 1 cut(s) 90
BspTI CTTAAG 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 2 cut(s) 145, 195
BssMI GATC 5 cut(s) 17, 46, 118, 216, 363
BstAFI CTTAAG 1 cut(s) 323
BstBI TTCGAA 1 cut(s) 90
BstDEI CTNAG 2 cut(s) 11, 79
BstF5I GGATG 3 cut(s) 49, 180, 348
BstFNI CGCG 2 cut(s) 186, 458
BstHHI GCGC 2 cut(s) 188, 284
BstKTI GATC 5 cut(s) 20, 49, 121, 219, 366
BstMBI GATC 5 cut(s) 17, 46, 118, 216, 363
BstMCI CGRYCG 1 cut(s) 20
BstMWI GCNNNNNNNGC 3 cut(s) 122, 131, 437
BstUI CGCG 2 cut(s) 186, 458
BstV1I GCAGC 1 cut(s) 386
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 3 cut(s) 134, 147, 359
BtsCI GGATG 3 cut(s) 49, 180, 348
BtsIMutI CAGTG 1 cut(s) 188
CfoI GCGC 2 cut(s) 188, 284
Cfr13I GGNCC 3 cut(s) 133, 424, 447
Csp6I GTAC 1 cut(s) 194
CviAII CATG 3 cut(s) 40, 355, 361
CviJI RGCY 7 cut(s) 15, 65, 83, 134, 147, 359, 431
CviKI_1 RGCY 7 cut(s) 15, 65, 83, 134, 147, 359, 431
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 2 cut(s) 11, 79
DpnI GATC 5 cut(s) 19, 48, 120, 218, 365
DpnII GATC 5 cut(s) 17, 46, 118, 216, 363
EaeI YGGCCR 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 424, 447
Eco57I CTGAAG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 447
FaeI CATG 3 cut(s) 43, 358, 364
FaiI YATR 4 cut(s) 41, 201, 356, 362
FaqI GGGAC 3 cut(s) 281, 285, 433
FatI CATG 3 cut(s) 39, 354, 360
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 3 cut(s) 56, 167, 355
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 2 cut(s) 62, 66
GlaI GCGC 2 cut(s) 187, 283
GluI GCNGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 3 cut(s) 134, 147, 359
HhaI GCGC 2 cut(s) 188, 284
Hin1II CATG 3 cut(s) 43, 358, 364
Hin6I GCGC 2 cut(s) 186, 282
HinP1I GCGC 2 cut(s) 186, 282
HinfI GANTC 2 cut(s) 351, 388
Hpy188I TCNGA 4 cut(s) 12, 29, 313, 424
HpyAV CCTTC 3 cut(s) 158, 266, 327
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 131, 437
HpyF3I CTNAG 2 cut(s) 11, 79
Hsp92II CATG 3 cut(s) 43, 358, 364
HspAI GCGC 2 cut(s) 186, 282
KflI GGGWCCC 1 cut(s) 447
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 5 cut(s) 17, 46, 118, 216, 363
LpnPI CCDG 2 cut(s) 126, 176
Lsp1109I GCAGC 1 cut(s) 386
MaeI CTAG 2 cut(s) 62, 66
MaeIII GTNAC 1 cut(s) 21
MalI GATC 5 cut(s) 19, 48, 120, 218, 365
MboI GATC 5 cut(s) 17, 46, 118, 216, 363
MboII GAAGA 2 cut(s) 41, 405
MfeI CAATTG 1 cut(s) 441
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 5 cut(s) 165, 203, 209, 305, 441
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 63, 137, 154, 321
Mox20I TGGCCA 1 cut(s) 359
MscI TGGCCA 1 cut(s) 359
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 359
MspCI CTTAAG 1 cut(s) 323
MunI CAATTG 1 cut(s) 441
MvnI CGCG 2 cut(s) 186, 458
MwoI GCNNNNNNNGC 3 cut(s) 122, 131, 437
NdeII GATC 5 cut(s) 17, 46, 118, 216, 363
NlaIII CATG 3 cut(s) 43, 358, 364
NlaIV GGNNCC 2 cut(s) 448, 449
NmuCI GTSAC 1 cut(s) 21
NspV TTCGAA 1 cut(s) 90
PceI AGGCCT 1 cut(s) 147
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 1 cut(s) 376
Ple19I CGATCG 1 cut(s) 20
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 448, 449
PspPI GGNCC 3 cut(s) 133, 424, 447
PspPPI RGGWCCY 1 cut(s) 447
PvuI CGATCG 1 cut(s) 20
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 5 cut(s) 17, 46, 118, 216, 363
Sau96I GGNCC 3 cut(s) 133, 424, 447
SchI GAGTC 1 cut(s) 382
SetI ASST 3 cut(s) 67, 71, 277
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 424, 447
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 5 cut(s) 165, 203, 209, 305, 441
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 1 cut(s) 184
SspMI CTAG 2 cut(s) 62, 66
StuI AGGCCT 1 cut(s) 147
TaqI TCGA 2 cut(s) 55, 90
TasI AATT 5 cut(s) 165, 203, 209, 305, 441
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 216, 243, 245
TspRI CASTG 1 cut(s) 195
Vha464I CTTAAG 1 cut(s) 323
VpaK11BI GGWCC 2 cut(s) 424, 447
XspI CTAG 2 cut(s) 62, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.