Rw3G013740

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000358
Physical Location & Seq
Reverse (-)
13563527 .. 13564588
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013740.1

Sequence Viewer

Length: 1062 bp
ATGGATGCCCTATGTAACCATGAACTAGACCTAATCTTGAACTGGGTTAAGGACCCAGACGATAGAAAATCATTCTCTCAGGTCAGTAAGCGATTGTGGGCAGTGGAGCGTCTGAACCGATCATCCATTCGCCTTCTCGAACTCATTCGTCTCCCTCGATTACTTGATAGATTTCCAAACTTGGTCACATTCCAAACATCCCTGCCTCTAAGCGACGCTGACCTCGAATTATTAGCCCAAAGATGTCCCAAACTAGAGGTCATCGACCTTGGAATACCGGCATTGTCCTACAGAAAAGTTGGGACCCAAGGTCTATGCACACTAGCAAACAGGTGTCCCAAGTTATCCAAGGTTTTACTTCGTGGGATGTGTATGATGAGTGATGCGCATGATGGAATTGTGTCGTTCATACCTTTAGCGGATAACTTGAAGCACTTGGATTTGGGATACATTATGTTCGTTTCTGACAAAACCCTTGCAGCAATTGGGTCCTCAAGTTGTCCGATTACCGTTTTGAACTTGGAAAGCTGTCATATTACGGATTGTGGATTGAGATTTTTGACAAATGGGTCTTGCTCAAAAACCATAAAGGAATTGGTCCTTGCAAAGTGTCATGGAATCACTGATTCTGGGGTCTCGCTCTTGCAGAACATGTGTGCCTTGGAGGAGCTAAATTTGGCTCATTGTCGCAAAGTCACTGACGTTGGAGGTGTGGCAATCTCCGCAATTCGAACCCTCAAGAAACTGGACTTTGCTAGGGGACCCAGAGTGACAGACCGCACCATTCTTGCTCTCGCCGAGAATTGCCTCAACTTGGAAATACTTGATTTGAGTGGTAATAAATTCGTGACCGGAGTTGGTATTCGTGCATTTTTGGGTCACAAGTGCTTACAATCCCTTGATCTACGCTATATTCGGGTTTATGTTAGCGGATCTGATTTGGAAGACCTAGCGCTTGCATGCCCGTCATTGAAGTCTATACTAGTAGAGGGTGGATGGAGAAAAAGATTGTTGGGTGAAATGCAAGAGAGCACTGTTAGCAGATTCGTGAGGTTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

353

Amino Acids

39.1

Weight (kDa)

8.59

Isoelectric Point (pI)

32.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 139 - 215 1.1e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 220 - 326 6.7e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 568
Acc16I TGCGCA 1 cut(s) 387
AciI CCGC 4 cut(s) 419, 723, 778, 930
AclWI GGATC 1 cut(s) 940
AcsI RAATTY 2 cut(s) 673, 842
AfeI AGCGCT 1 cut(s) 954
AfiI CCNNNNNNNGG 1 cut(s) 814
AflIII ACRYGT 1 cut(s) 651
AgsI TTSAA 5 cut(s) 40, 430, 517, 973, 1057
AhdI GACNNNNNGTC 1 cut(s) 309
AhlI ACTAGT 1 cut(s) 982
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 2 cut(s) 528, 670
AluI AGCT 2 cut(s) 528, 670
Alw21I GWGCWC 1 cut(s) 1034
Alw26I GTCTC 2 cut(s) 155, 640
AlwI GGATC 1 cut(s) 940
Aor51HI AGCGCT 1 cut(s) 954
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 2 cut(s) 673, 842
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 388, 955
AspS9I GGNCC 5 cut(s) 52, 303, 489, 598, 761
AsuHPI GGTGA 1 cut(s) 1028
AsuII TTCGAA 1 cut(s) 730
AvaII GGWCC 5 cut(s) 52, 303, 489, 598, 761
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 1 cut(s) 1034
BbvI GCAGC 1 cut(s) 491
BccI CCATC 2 cut(s) 386, 990
BciVI GTATCC 1 cut(s) 440
BcoDI GTCTC 2 cut(s) 155, 640
BcuI ACTAGT 1 cut(s) 982
BfaI CTAG 6 cut(s) 26, 254, 323, 756, 950, 983
BfmI CTRYAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 956
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
Bme18I GGWCC 5 cut(s) 52, 303, 489, 598, 761
BmeRI GACNNNNNGTC 1 cut(s) 309
BmgT120I GGNCC 5 cut(s) 52, 303, 489, 598, 761
BmiI GGNNCC 6 cut(s) 54, 304, 305, 490, 762, 763
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 951
Bpu14I TTCGAA 1 cut(s) 730
BpuEI CTTGAG 2 cut(s) 478, 722
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 4 cut(s) 268, 307, 348, 660
BsaWI WCCGGW 1 cut(s) 851
Bsc4I CCNNNNNNNGG 1 cut(s) 814
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 47, 750
BseDI CCNNGG 4 cut(s) 268, 307, 348, 660
BseGI GGATG 5 cut(s) 10, 122, 197, 372, 1001
BseLI CCNNNNNNNGG 1 cut(s) 814
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 47, 750
BseRI GAGGAG 1 cut(s) 680
BseXI GCAGC 1 cut(s) 491
BsiHKAI GWGCWC 1 cut(s) 1034
BsiSI CCGG 2 cut(s) 278, 852
BslFI GGGAC 4 cut(s) 231, 316, 321, 774
BslI CCNNNNNNNGG 1 cut(s) 814
BsmAI GTCTC 2 cut(s) 155, 640
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 4 cut(s) 231, 316, 321, 774
Bso31I GGTCTC 1 cut(s) 640
Bsp119I TTCGAA 1 cut(s) 730
Bsp1286I GDGCHC 1 cut(s) 1034
Bsp143I GATC 3 cut(s) 119, 901, 932
BspACI CCGC 4 cut(s) 419, 723, 778, 930
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 6 cut(s) 54, 304, 305, 490, 762, 763
BspPI GGATC 1 cut(s) 940
BspT104I TTCGAA 1 cut(s) 730
BspTNI GGTCTC 1 cut(s) 640
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 2 cut(s) 47, 750
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 4 cut(s) 268, 307, 348, 660
BssMI GATC 3 cut(s) 119, 901, 932
BssT1I CCWWGG 4 cut(s) 268, 307, 348, 660
Bst4CI ACNGT 2 cut(s) 511, 1036
BstBI TTCGAA 1 cut(s) 730
BstC8I GCNNGC 2 cut(s) 957, 961
BstDEI CTNAG 2 cut(s) 78, 209
BstF5I GGATG 5 cut(s) 10, 122, 197, 372, 1001
BstH2I RGCGCY 1 cut(s) 956
BstHHI GCGC 2 cut(s) 388, 955
BstKTI GATC 3 cut(s) 122, 904, 935
BstMAI GTCTC 2 cut(s) 155, 640
BstMBI GATC 3 cut(s) 119, 901, 932
BstMWI GCNNNNNNNGC 2 cut(s) 722, 1038
BstNSI RCATGY 2 cut(s) 655, 963
BstSFI CTRYAG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 491
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 1 cut(s) 932
BstYI RGATCY 1 cut(s) 932
BsuI GTATCC 1 cut(s) 440
BtsCI GGATG 5 cut(s) 10, 122, 197, 372, 1001
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 4 cut(s) 108, 621, 696, 1032
Cac8I GCNNGC 2 cut(s) 957, 961
CfoI GCGC 2 cut(s) 388, 955
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 5 cut(s) 52, 303, 489, 598, 761
CseI GACGC 2 cut(s) 98, 224
CviAII CATG 5 cut(s) 20, 389, 614, 652, 960
CviJI RGCY 4 cut(s) 236, 528, 670, 680
CviKI_1 RGCY 4 cut(s) 236, 528, 670, 680
DdeI CTNAG 2 cut(s) 78, 209
DpnI GATC 3 cut(s) 121, 903, 934
DpnII GATC 3 cut(s) 119, 901, 932
DrdI GACNNNNNNGTC 1 cut(s) 568
DriI GACNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 568
Eam1105I GACNNNNNGTC 1 cut(s) 309
Eco130I CCWWGG 4 cut(s) 268, 307, 348, 660
Eco31I GGTCTC 1 cut(s) 640
Eco47I GGWCC 5 cut(s) 52, 303, 489, 598, 761
Eco47III AGCGCT 1 cut(s) 954
EcoO109I RGGNCCY 4 cut(s) 52, 303, 489, 761
EcoT14I CCWWGG 4 cut(s) 268, 307, 348, 660
ErhI CCWWGG 4 cut(s) 268, 307, 348, 660
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 5 cut(s) 23, 392, 617, 655, 963
FaqI GGGAC 4 cut(s) 231, 316, 321, 774
FatI CATG 5 cut(s) 19, 388, 613, 651, 959
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 5 cut(s) 17, 109, 184, 379, 1008
Fsp4HI GCNGC 1 cut(s) 480
FspAI RTGCGCAY 1 cut(s) 387
FspBI CTAG 6 cut(s) 26, 254, 323, 756, 950, 983
FspI TGCGCA 1 cut(s) 387
GlaI GCGC 2 cut(s) 387, 954
GluI GCNGC 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 956
HapII CCGG 2 cut(s) 278, 852
HgaI GACGC 2 cut(s) 98, 224
HhaI GCGC 2 cut(s) 388, 955
Hin1II CATG 5 cut(s) 23, 392, 617, 655, 963
Hin6I GCGC 2 cut(s) 386, 953
HinP1I GCGC 2 cut(s) 386, 953
HinfI GANTC 3 cut(s) 618, 626, 1044
HpaII CCGG 2 cut(s) 278, 852
HphI GGTGA 1 cut(s) 1028
Hpy188I TCNGA 4 cut(s) 114, 466, 504, 937
Hpy188III TCNNGA 5 cut(s) 37, 137, 739, 847, 1048
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 2 cut(s) 511, 1036
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 7 cut(s) 318, 479, 605, 646, 869, 959, 1024
HpyF10VI GCNNNNNNNGC 2 cut(s) 722, 1038
HpyF3I CTNAG 2 cut(s) 78, 209
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 5 cut(s) 23, 392, 617, 655, 963
HspAI GCGC 2 cut(s) 386, 953
KflI GGGWCCC 2 cut(s) 303, 761
Kzo9I GATC 3 cut(s) 119, 901, 932
LmnI GCTCC 2 cut(s) 106, 667
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 1 cut(s) 373
MaeI CTAG 6 cut(s) 26, 254, 323, 756, 950, 983
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 6 cut(s) 14, 184, 694, 769, 847, 878
MalI GATC 3 cut(s) 121, 903, 934
MboI GATC 3 cut(s) 119, 901, 932
MboII GAAGA 1 cut(s) 956
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 932
MhlI GDGCHC 1 cut(s) 1034
MluCI AATT 9 cut(s) 227, 396, 483, 593, 673, 726, 802, 842, 1057
MmeI TCCRAC 1 cut(s) 685
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 1 cut(s) 48
MspI CCGG 2 cut(s) 278, 852
MunI CAATTG 1 cut(s) 483
MwoI GCNNNNNNNGC 2 cut(s) 722, 1038
NdeII GATC 3 cut(s) 119, 901, 932
NlaIII CATG 5 cut(s) 23, 392, 617, 655, 963
NlaIV GGNNCC 6 cut(s) 54, 304, 305, 490, 762, 763
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 5 cut(s) 184, 694, 769, 847, 878
NsbI TGCGCA 1 cut(s) 387
NspI RCATGY 2 cut(s) 655, 963
NspV TTCGAA 1 cut(s) 730
PaeI GCATGC 1 cut(s) 963
PciI ACATGT 1 cut(s) 651
PcsI WCGNNNNNNNCGW 2 cut(s) 154, 222
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 618, 626, 1044
PkrI GCNGC 1 cut(s) 481
PpuMI RGGWCCY 4 cut(s) 52, 303, 489, 761
PscI ACATGT 1 cut(s) 651
Psp5II RGGWCCY 4 cut(s) 52, 303, 489, 761
PspN4I GGNNCC 6 cut(s) 54, 304, 305, 490, 762, 763
PspPI GGNCC 5 cut(s) 52, 303, 489, 598, 761
PspPPI RGGWCCY 4 cut(s) 52, 303, 489, 761
PsuI RGATCY 1 cut(s) 932
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 3 cut(s) 119, 901, 932
Sau96I GGNCC 5 cut(s) 52, 303, 489, 598, 761
SduI GDGCHC 1 cut(s) 1034
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 1 cut(s) 289
SfuI TTCGAA 1 cut(s) 730
SinI GGWCC 5 cut(s) 52, 303, 489, 598, 761
SmlI CTYRAG 2 cut(s) 493, 737
SmoI CTYRAG 2 cut(s) 493, 737
SpeI ACTAGT 1 cut(s) 982
SphI GCATGC 1 cut(s) 963
Sse9I AATT 9 cut(s) 227, 396, 483, 593, 673, 726, 802, 842, 1057
SsiI CCGC 4 cut(s) 419, 723, 778, 930
SspMI CTAG 6 cut(s) 26, 254, 323, 756, 950, 983
StyI CCWWGG 4 cut(s) 268, 307, 348, 660
TaaI ACNGT 2 cut(s) 511, 1036
TaiI ACGT 1 cut(s) 705
TaqI TCGA 5 cut(s) 138, 157, 225, 264, 730
TasI AATT 9 cut(s) 227, 396, 483, 593, 673, 726, 802, 842, 1057
TfiI GAWTC 3 cut(s) 618, 626, 1044
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 4 cut(s) 108, 628, 703, 1039
TseFI GTSAC 5 cut(s) 184, 694, 769, 847, 878
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 5 cut(s) 184, 694, 769, 847, 878
TspDTI ATGAA 2 cut(s) 36, 397
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 4 cut(s) 108, 628, 703, 1039
VpaK11BI GGWCC 5 cut(s) 52, 303, 489, 598, 761
XapI RAATTY 2 cut(s) 673, 842
XceI RCATGY 2 cut(s) 655, 963
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 6 cut(s) 26, 254, 323, 756, 950, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.