Rh6DG468400

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000358
Physical Location & Seq
Reverse (-)
63583414 .. 63585363
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG468400.1

Sequence Viewer

Length: 1104 bp
ATGGGAAAAGAATTGGGGAGAATTCCCTTGCTGTGTCACGAAGAACTTGGCCTAATCCTCACCAAGCTCAGCGACGCAGGTGACAGAAAAACCTTCTCCCAGGTCTGCAAGGAATGGTTTCAAGTCGAGGCTCTACACCGATCATCACTCCGTCTTCTCCGACACCAATTTCTCCGTCAGGTACTCCCTAGATTCCCAAATTTACTCACATTCGAAACCTCCGAGCCTGTCACCGACGCTGACGTCGAATTCTTGGCCCAAACATGCCCCCAACTCGAGACCATTGACCTTACTACGTCAGGTCATAAACCCTTCAGTCTCTTGGGGTTTGGTCTAGTGGTGGTAGCAAATAGATGTCCAAAACTATCCAAGGTCTTGCTTAAAAGGAGAAGGTCTATTACTGATCCCGTAATTGTTTCGCTCATAAAGTTAGCACCCAATTTGGCACATTTGGATTTGGGAGGTTGTTATAACATCTCGGATAGAGCCCTCAAAGCAATTGGGTGTTGTGGTTCACTTAGCTATTTAGATTTGGAATCGTGTGGTTTCACGGATCGTGGATTGGGTTTTCTTGCAAATGGGTCTTGCTCGAAAACGTTAAAGACATTGATACTAGCTTGGTGTAAGGGAATTACTGATGTTGGGGTCTCAAGTTTGCAGAAAATGCAATGCTTGGAGCACCTGAATTTGTCCAACAGTTCGAGGCATAAGATCACTGACATTGGGGGTGTCGCAATCTCGGCCATTAAGACCCTTAAGAAATTGAACTTGGCTGCGCTGGCCAAACTGTCCAACCGCACAGTTGCTGCTCTGGCTCAGAATTGCCCCAACTTGGAGGTGCTTGATATAAGTGAATGTAGGTTGTTAACTGGAGCTGGTATTCGTGCATTTTCGGGTCATGTGTGCTTGGAAACGATTGTTTTGCATCGTCTTCATCAAGTTAGCGCATCTGATTTGGAACACTTGGTGCTGGGATGCCCGTCATTGAAGTCTATACTTCTGCATGGTGAGGAGAGTTTGAGCAAGATATTGCCCCTGATGCGAGAGAGCACTAGAAGACTCGTGAGGATGGGTAGCGCTTTTCCAACCTATTCCTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

367

Amino Acids

40.17

Weight (kDa)

9.09

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 16 - 48 1.5e-07 F-box
DUF7885 PF25372 77 - 299 5.3e-16 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AarI CACCTGC 1 cut(s) 68
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 68
AciI CCGC 1 cut(s) 796
AclI AACGTT 1 cut(s) 596
AclWI GGATC 2 cut(s) 398, 561
AcoI YGGCCR 2 cut(s) 741, 780
AcsI RAATTY 4 cut(s) 21, 199, 248, 685
AcuI CTGAAG 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 243
AdeI CACNNNGTG 1 cut(s) 967
AfaI GTAC 1 cut(s) 183
AfeI AGCGCT 1 cut(s) 1078
AfiI CCNNNNNNNGG 1 cut(s) 832
AflII CTTAAG 1 cut(s) 755
AgsI TTSAA 3 cut(s) 122, 766, 988
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AluBI AGCT 4 cut(s) 67, 522, 617, 875
AluI AGCT 4 cut(s) 67, 522, 617, 875
Alw21I GWGCWC 2 cut(s) 681, 1052
Alw26I GTCTC 3 cut(s) 272, 323, 652
AlwI GGATC 2 cut(s) 398, 561
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 1078
AoxI GGCC 4 cut(s) 49, 255, 741, 780
ApeKI GCWGC 2 cut(s) 773, 806
ApoI RAATTY 4 cut(s) 21, 199, 248, 685
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 3 cut(s) 778, 947, 1079
AspS9I GGNCC 1 cut(s) 256
AsuHPI GGTGA 4 cut(s) 52, 92, 223, 1019
AsuII TTCGAA 1 cut(s) 213
AvaI CYCGRG 1 cut(s) 275
BalI TGGCCA 1 cut(s) 782
BanII GRGCYC 1 cut(s) 490
BarI GAAGNNNNNNTAC 2 cut(s) 382, 414
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 3 cut(s) 146, 923, 1063
Bbv12I GWGCWC 2 cut(s) 681, 1052
BbvI GCAGC 2 cut(s) 760, 793
BccI CCATC 1 cut(s) 1063
BcgI CGANNNNNNTGC 2 cut(s) 904, 938
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 3 cut(s) 272, 323, 652
BfaI CTAG 4 cut(s) 189, 335, 614, 1053
BfoI RGCGCY 1 cut(s) 1080
BfrI CTTAAG 1 cut(s) 755
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 2 cut(s) 774, 807
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 2 cut(s) 775, 808
Bme1390I CCNGG 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 4 cut(s) 934, 956, 965, 1029
BpiI GAAGAC 3 cut(s) 146, 923, 1063
BpmI CTGGAG 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 634
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 2 cut(s) 272, 652
BsaJI CCNNGG 2 cut(s) 99, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 1 cut(s) 674
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 99, 369
BseGI GGATG 2 cut(s) 980, 1074
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 2 cut(s) 82, 830
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 1 cut(s) 1025
BseXI GCAGC 2 cut(s) 760, 793
BseYI CCCAGC 1 cut(s) 970
BshFI GGCC 4 cut(s) 51, 257, 743, 782
BsiHKAI GWGCWC 2 cut(s) 681, 1052
BsiHKCI CYCGRG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 832
BsmAI GTCTC 3 cut(s) 272, 323, 652
BsnI GGCC 4 cut(s) 51, 257, 743, 782
Bso31I GGTCTC 2 cut(s) 272, 652
BsoBI CYCGRG 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 490, 681, 1052
Bsp143I GATC 4 cut(s) 140, 403, 553, 711
Bsp1720I GCTNAGC 1 cut(s) 68
BspACI CCGC 1 cut(s) 796
BspANI GGCC 4 cut(s) 51, 257, 743, 782
BspCNI CTCAG 2 cut(s) 81, 829
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 2 cut(s) 398, 561
BspT104I TTCGAA 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 755
BspTNI GGTCTC 2 cut(s) 272, 652
BsrDI GCAATG 1 cut(s) 674
BsrI ACTGG 1 cut(s) 874
BssECI CCNNGG 2 cut(s) 99, 369
BssMI GATC 4 cut(s) 140, 403, 553, 711
BssNI GRCGYC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 698, 789, 802
BstACI GRCGYC 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 755
BstAPI GCANNNNNTGC 1 cut(s) 664
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 3 cut(s) 68, 518, 816
BstF5I GGATG 2 cut(s) 980, 1074
BstH2I RGCGCY 1 cut(s) 1080
BstHHI GCGC 3 cut(s) 778, 947, 1079
BstKTI GATC 4 cut(s) 143, 406, 556, 714
BstMAI GTCTC 3 cut(s) 272, 323, 652
BstMBI GATC 4 cut(s) 140, 403, 553, 711
BstMWI GCNNNNNNNGC 6 cut(s) 494, 664, 740, 779, 812, 1039
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 760, 793
BstV2I GAAGAC 3 cut(s) 146, 923, 1063
BsuRI GGCC 4 cut(s) 51, 257, 743, 782
BtsCI GGATG 2 cut(s) 980, 1074
BtsIMutI CAGTG 1 cut(s) 714
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 780
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 3 cut(s) 778, 947, 1079
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 2 cut(s) 83, 245
Csp6I GTAC 1 cut(s) 182
CviAII CATG 3 cut(s) 264, 899, 1004
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 3 cut(s) 68, 518, 816
DpnI GATC 4 cut(s) 142, 405, 555, 713
DpnII GATC 4 cut(s) 140, 403, 553, 711
DraIII CACNNNGTG 1 cut(s) 967
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 741, 780
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 490
Eco31I GGTCTC 2 cut(s) 272, 652
Eco47III AGCGCT 1 cut(s) 1078
Eco57I CTGAAG 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 275
EcoRI GAATTC 2 cut(s) 21, 248
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 3 cut(s) 267, 902, 1007
FaiI YATR 9 cut(s) 265, 306, 425, 471, 708, 848, 900, 995, 1005
FatI CATG 3 cut(s) 263, 898, 1003
Fnu4HI GCNGC 2 cut(s) 774, 807
FokI GGATG 2 cut(s) 987, 1081
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 774, 807
FspBI CTAG 4 cut(s) 189, 335, 614, 1053
GlaI GCGC 3 cut(s) 777, 946, 1078
GluI GCNGC 2 cut(s) 774, 807
GsaI CCCAGC 1 cut(s) 974
GsuI CTGGAG 1 cut(s) 891
HaeII RGCGCY 1 cut(s) 1080
HaeIII GGCC 4 cut(s) 51, 257, 743, 782
HgaI GACGC 2 cut(s) 83, 245
HhaI GCGC 3 cut(s) 778, 947, 1079
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 3 cut(s) 267, 902, 1007
Hin6I GCGC 3 cut(s) 776, 945, 1077
HinP1I GCGC 3 cut(s) 776, 945, 1077
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HinfI GANTC 3 cut(s) 192, 536, 1059
HpaI GTTAAC 1 cut(s) 867
HphI GGTGA 4 cut(s) 52, 92, 223, 1019
Hpy166II GTNNAC 2 cut(s) 515, 867
Hpy188I TCNGA 5 cut(s) 161, 223, 481, 819, 952
Hpy188III TCNNGA 3 cut(s) 38, 277, 1063
Hpy8I GTNNAC 2 cut(s) 515, 867
Hpy99I CGWCG 3 cut(s) 77, 239, 248
HpyAV CCTTC 3 cut(s) 103, 322, 384
HpyCH4III ACNGT 3 cut(s) 698, 789, 802
HpyCH4IV ACGT 3 cut(s) 243, 296, 596
HpyCH4V TGCA 7 cut(s) 108, 575, 658, 667, 887, 925, 1003
HpyF10VI GCNNNNNNNGC 6 cut(s) 494, 664, 740, 779, 812, 1039
HpyF3I CTNAG 3 cut(s) 68, 518, 816
HpySE526I ACGT 3 cut(s) 243, 296, 596
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 3 cut(s) 267, 902, 1007
HspAI GCGC 3 cut(s) 776, 945, 1077
KspAI GTTAAC 1 cut(s) 867
Kzo9I GATC 4 cut(s) 140, 403, 553, 711
LmnI GCTCC 2 cut(s) 676, 872
Lsp1109I GCAGC 2 cut(s) 760, 793
LweI GCATC 4 cut(s) 934, 956, 965, 1029
MaeI CTAG 4 cut(s) 189, 335, 614, 1053
MaeII ACGT 3 cut(s) 243, 296, 596
MaeIII GTNAC 3 cut(s) 35, 80, 229
MalI GATC 4 cut(s) 142, 405, 555, 713
MboI GATC 4 cut(s) 140, 403, 553, 711
MboII GAAGA 4 cut(s) 53, 146, 923, 1068
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 3 cut(s) 490, 681, 1052
MlsI TGGCCA 1 cut(s) 782
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 1 cut(s) 1053
MmeI TCCRAC 3 cut(s) 184, 717, 816
MnlI CCTC 9 cut(s) 68, 121, 229, 455, 500, 696, 829, 1003, 1059
Mox20I TGGCCA 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 782
MseI TTAA 5 cut(s) 381, 599, 747, 756, 866
Msp20I TGGCCA 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 6 cut(s) 494, 664, 740, 779, 812, 1039
NdeII GATC 4 cut(s) 140, 403, 553, 711
NlaIII CATG 3 cut(s) 267, 902, 1007
NmeAIII GCCGAG 1 cut(s) 719
NmuCI GTSAC 3 cut(s) 35, 80, 229
NspI RCATGY 1 cut(s) 267
NspV TTCGAA 1 cut(s) 213
PaeR7I CTCGAG 1 cut(s) 275
PaqCI CACCTGC 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 219, 243
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 192, 536
PkrI GCNGC 2 cut(s) 775, 808
PleI GAGTC 1 cut(s) 1053
PpsI GAGTC 1 cut(s) 1053
PsiI TTATAA 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 970
PspGI CCWGG 1 cut(s) 99
PspPI GGNCC 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 806
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 5 cut(s) 381, 599, 747, 756, 866
SatI GCNGC 2 cut(s) 774, 807
Sau3AI GATC 4 cut(s) 140, 403, 553, 711
Sau96I GGNCC 1 cut(s) 256
SchI GAGTC 1 cut(s) 1053
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 3 cut(s) 490, 681, 1052
SfaNI GCATC 4 cut(s) 934, 956, 965, 1029
Sfr274I CTCGAG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 213
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 275, 649, 755
SmoI CTYRAG 3 cut(s) 275, 649, 755
SsiI CCGC 1 cut(s) 796
SspMI CTAG 4 cut(s) 189, 335, 614, 1053
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 3 cut(s) 698, 789, 802
TaiI ACGT 3 cut(s) 246, 299, 599
TaqI TCGA 6 cut(s) 126, 213, 246, 276, 590, 701
TfiI GAWTC 2 cut(s) 192, 536
Tru1I TTAA 5 cut(s) 381, 599, 747, 756, 866
Tru9I TTAA 5 cut(s) 381, 599, 747, 756, 866
TscAI CASTG 1 cut(s) 721
TseFI GTSAC 3 cut(s) 35, 80, 229
TseI GCWGC 2 cut(s) 773, 806
Tsp45I GTSAC 3 cut(s) 35, 80, 229
TspDTI ATGAA 1 cut(s) 923
TspGWI ACGGA 3 cut(s) 140, 164, 566
TspRI CASTG 1 cut(s) 721
Vha464I CTTAAG 1 cut(s) 755
XapI RAATTY 4 cut(s) 21, 199, 248, 685
XceI RCATGY 1 cut(s) 267
XhoI CTCGAG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 4 cut(s) 189, 335, 614, 1053
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.