Rh6DG461300

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000358
Physical Location & Seq
Reverse (-)
63097833 .. 63098249
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG461300.1

Sequence Viewer

Length: 417 bp
ATGCGTGTCTTGGAGGAGCTGGATTTGTCCTTCGGTAGCGAGCTAACTGATGTTGGAGGACAGGCAATCTCTGCAATTCAAACCCTCAAGAAGTTGAACTTGGCCTGTGTATTCTCCCTGACAGAAAAAACTATTGTAGCTCTTGCTAAGAATTGCATAAACTTGGAGATGCTTAATCTACGTGGTGGTTTAGGGGTCACTACAGCTGCTATTGATGCTTTTTTGGGTCACAAATGCTTGCAATCCCTTAATCTAATTGGTTGTTTGTTTGATGATGTTAGAGGATCTGCATTAGAAAGCCTAGCGCTTCAATGCCCTTCATTGAAGTCAATTGTGGTGAATGAAAAATGGAGAGATAGGCTGTTGCAGGAAATGCAAGAGAGTCCTGTTAGCAGATTCCTGCAATTCAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

138

Amino Acids

15.14

Weight (kDa)

5.82

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 292
AfeI AGCGCT 1 cut(s) 306
AgsI TTSAA 5 cut(s) 80, 97, 311, 325, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 4 cut(s) 19, 43, 140, 206
AluI AGCT 4 cut(s) 19, 43, 140, 206
AlwI GGATC 1 cut(s) 292
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 349
BbvI GCAGC 1 cut(s) 193
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmsI GCATC 2 cut(s) 159, 205
BpuEI CTTGAG 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 104
BsnI GGCC 1 cut(s) 104
Bsp143I GATC 1 cut(s) 284
BspANI GGCC 1 cut(s) 104
BspPI GGATC 1 cut(s) 292
BssMI GATC 1 cut(s) 284
BstAPI GCANNNNNTGC 2 cut(s) 71, 373
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 41, 239
BstDEI CTNAG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 1 cut(s) 287
BstMBI GATC 1 cut(s) 284
BstMWI GCNNNNNNNGC 3 cut(s) 71, 215, 373
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 41, 239
CfoI GCGC 1 cut(s) 307
CviJI RGCY 7 cut(s) 19, 43, 104, 140, 206, 300, 361
CviKI_1 RGCY 7 cut(s) 19, 43, 104, 140, 206, 300, 361
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 286
DpnII GATC 1 cut(s) 284
Eco47III AGCGCT 1 cut(s) 306
FaiI YATR 1 cut(s) 158
FalI AAGNNNNNCTT 2 cut(s) 83, 115
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 1 cut(s) 104
HhaI GCGC 1 cut(s) 307
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HinfI GANTC 2 cut(s) 382, 396
HphI GGTGA 1 cut(s) 349
Hpy188III TCNNGA 2 cut(s) 88, 409
HpyAV CCTTC 2 cut(s) 40, 327
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 7 cut(s) 74, 156, 241, 290, 367, 376, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 215, 373
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 181
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 1 cut(s) 284
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 5, 47, 118, 131, 353, 399, 413
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 159, 205
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 2 cut(s) 196, 227
MalI GATC 1 cut(s) 286
MboI GATC 1 cut(s) 284
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 1 cut(s) 284
MluCI AATT 5 cut(s) 75, 151, 255, 330, 404
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 4 cut(s) 7, 50, 95, 275
MseI TTAA 2 cut(s) 174, 249
MspA1I CMGCKG 1 cut(s) 206
MunI CAATTG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 71, 215, 373
NdeII GATC 1 cut(s) 284
NmuCI GTSAC 2 cut(s) 196, 227
PfeI GAWTC 1 cut(s) 396
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
Ppu21I YACGTR 1 cut(s) 182
PsuI RGATCY 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 206
SaqAI TTAA 2 cut(s) 174, 249
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 284
SchI GAGTC 1 cut(s) 391
SetI ASST 5 cut(s) 21, 45, 142, 184, 208
SfaNI GCATC 2 cut(s) 159, 205
SfcI CTRYAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 5 cut(s) 75, 151, 255, 330, 404
SspMI CTAG 1 cut(s) 302
TaiI ACGT 1 cut(s) 184
TasI AATT 5 cut(s) 75, 151, 255, 330, 404
TfiI GAWTC 1 cut(s) 396
Tru1I TTAA 2 cut(s) 174, 249
Tru9I TTAA 2 cut(s) 174, 249
TseFI GTSAC 2 cut(s) 196, 227
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 2 cut(s) 196, 227
TspDTI ATGAA 2 cut(s) 309, 357
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.