FvH4_2g35530

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Forward (+)
26161491 .. 26162745
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35530.t1

Sequence Viewer

Length: 744 bp
ATGAATAAGTTAGGAGACGACGAACTCGGCCTAATCCTGAGCCTGGTCGCCGACCCAGATGATAGAAAATCGGCGTCTGAGGTCTGCAAGGGGTGGTGGATCATGGAGGGTCTGAGCCGATCATCACTCCTAGTTGACGACCCCGATCATCTTCCTCGATTACTTGCTAGGTACCCAAACTTAACCACATTCGAAACGCACAACCAAATGAGCAATGCCGACTTGGCATTGGTGGCCCAATCATGTCCCAAATTGTCCACGATTGTGCTCGGAAGGAACGGGGATGCACTACTTGGAATTACGGCTCTGATAACTTCAGCTGCACATAACTTGACTCATTTGGATATGGATGGTTGTTGGTTTGTTACTGACCAAGCCTTTGAAGCAATTGGGTCCTCTAGTTGTGCCCTTCGCTTTTTAAGTCTGAGAGGTAGTTCCGTTACTGACGACGGATTGAGATTTTTGACAAATGGTTCTTGTTCAAAAACCATCAAGCAATTGAAGCTCGAGAGCTGCTGTCATATCACTGATGTCGGGGTCTCGCTTTTGTGCATGATGCGTGTCTTGGAGGAGCTGGATTTGGCGTTCTGTGCCCAGCTAACTGATGTTGGAGGACAGGCGATCTCCACAATTCAAACCCTCAAAGTGTTGAACTTGGCCTGTCTAATCGACCTGACAGAACAAACTTTTGTAGCTCTTGCTAAGAATTGCATAAACTTGGAGGTTCTTATTCTCCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

248

Amino Acids

26.8

Weight (kDa)

4.75

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 5 - 41 8.1e-09 F-box
DUF7885 PF25372 59 - 185 1.2e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AclWI GGATC 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 5 cut(s) 383, 483, 502, 635, 652
AjnI CCWGG 1 cut(s) 42
AleI CACNNNNGTG 1 cut(s) 263
AloI GAACNNNNNNTCC 2 cut(s) 569, 601
AluBI AGCT 6 cut(s) 320, 505, 513, 574, 598, 695
AluI AGCT 6 cut(s) 320, 505, 513, 574, 598, 695
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 9, 544
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 3 cut(s) 28, 234, 657
ApeKI GCWGC 2 cut(s) 320, 513
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
Asp718I GGTACC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 235, 393
AsuII TTCGAA 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 2 cut(s) 409, 595
BanI GGYRCC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 307, 500
BccI CCATC 2 cut(s) 344, 497
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 9, 544
BfaI CTAG 3 cut(s) 131, 168, 399
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 2 cut(s) 321, 514
BlsI GCNGC 2 cut(s) 322, 515
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 235, 393
BmiI GGNNCC 2 cut(s) 173, 394
BmrFI CCNGG 1 cut(s) 44
BmsI GCATC 2 cut(s) 274, 546
Bpu10I CCTNAGC 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 544
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 289, 355
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 4 cut(s) 29, 69, 104, 416
BseRI GAGGAG 1 cut(s) 584
BseSI GKGCMC 2 cut(s) 409, 595
BseXI GCAGC 2 cut(s) 307, 500
BseYI CCCAGC 1 cut(s) 594
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 3 cut(s) 30, 236, 659
BshNI GGYRCC 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 9, 544
BsmBI CGTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 3 cut(s) 30, 236, 659
Bso31I GGTCTC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 270, 409, 595
Bsp143I GATC 4 cut(s) 99, 119, 145, 621
BspANI GGCC 3 cut(s) 30, 236, 659
BspCNI CTCAG 4 cut(s) 30, 70, 105, 417
BspLI GGNNCC 2 cut(s) 173, 394
BspPI GGATC 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 220
BssMI GATC 4 cut(s) 99, 119, 145, 621
BssNI GRCGYC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 192
BstDEI CTNAG 5 cut(s) 38, 78, 113, 425, 702
BstF5I GGATG 2 cut(s) 289, 355
BstKTI GATC 4 cut(s) 102, 122, 148, 624
BstMAI GTCTC 2 cut(s) 9, 544
BstMBI GATC 4 cut(s) 99, 119, 145, 621
BstMWI GCNNNNNNNGC 5 cut(s) 224, 233, 383, 502, 590
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstSLI GKGCMC 2 cut(s) 409, 595
BstV1I GCAGC 2 cut(s) 307, 500
BsuRI GGCC 3 cut(s) 30, 236, 659
BtsCI GGATG 2 cut(s) 289, 355
BtsIMutI CAGTG 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 235, 393
CseI GACGC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 103, 243, 553
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 5 cut(s) 38, 78, 113, 425, 702
DpnI GATC 4 cut(s) 101, 121, 147, 623
DpnII GATC 4 cut(s) 99, 119, 145, 621
Eco31I GGTCTC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 3 cut(s) 106, 246, 556
FaiI YATR 7 cut(s) 104, 244, 327, 347, 522, 554, 713
FaqI GGGAC 1 cut(s) 231
FatI CATG 3 cut(s) 102, 242, 552
Fnu4HI GCNGC 2 cut(s) 321, 514
FokI GGATG 2 cut(s) 296, 362
Fsp4HI GCNGC 2 cut(s) 321, 514
FspBI CTAG 3 cut(s) 131, 168, 399
GluI GCNGC 2 cut(s) 321, 514
GsaI CCCAGC 1 cut(s) 598
HaeIII GGCC 3 cut(s) 30, 236, 659
HgaI GACGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 3 cut(s) 106, 246, 556
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 136, 258
Hpy188I TCNGA 5 cut(s) 79, 114, 272, 309, 426
Hpy188III TCNNGA 2 cut(s) 37, 508
Hpy8I GTNNAC 2 cut(s) 136, 258
Hpy99I CGWCG 2 cut(s) 23, 452
HpyAV CCTTC 2 cut(s) 267, 419
HpyCH4V TGCA 5 cut(s) 87, 287, 323, 552, 711
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 233, 383, 502, 590
HpyF3I CTNAG 5 cut(s) 38, 78, 113, 425, 702
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 3 cut(s) 106, 246, 556
KpnI GGTACC 1 cut(s) 175
Kzo9I GATC 4 cut(s) 99, 119, 145, 621
LmnI GCTCC 1 cut(s) 571
LpnPI CCDG 9 cut(s) 29, 50, 56, 69, 560, 602, 608, 673, 686
Lsp1109I GCAGC 2 cut(s) 307, 500
LweI GCATC 2 cut(s) 274, 546
MaeI CTAG 3 cut(s) 131, 168, 399
MaeIII GTNAC 2 cut(s) 364, 439
MalI GATC 4 cut(s) 101, 121, 147, 623
MboI GATC 4 cut(s) 99, 119, 145, 621
MboII GAAGA 1 cut(s) 143
MfeI CAATTG 2 cut(s) 387, 497
MhlI GDGCHC 3 cut(s) 270, 409, 595
MluCI AATT 6 cut(s) 251, 297, 387, 497, 630, 706
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 9 cut(s) 73, 100, 165, 406, 422, 562, 605, 650, 715
MseI TTAA 2 cut(s) 182, 419
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 44
MunI CAATTG 2 cut(s) 387, 497
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 224, 233, 383, 502, 590
NdeII GATC 4 cut(s) 99, 119, 145, 621
NlaIII CATG 3 cut(s) 106, 246, 556
NlaIV GGNNCC 2 cut(s) 173, 394
NmeAIII GCCGAG 1 cut(s) 6
NspV TTCGAA 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 506
PkrI GCNGC 2 cut(s) 322, 515
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 594
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 173, 394
PspPI GGNCC 2 cut(s) 235, 393
PspPPI RGGWCCY 1 cut(s) 393
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 2 cut(s) 182, 419
SatI GCNGC 2 cut(s) 321, 514
Sau3AI GATC 4 cut(s) 99, 119, 145, 621
Sau96I GGNCC 2 cut(s) 235, 393
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 3 cut(s) 270, 409, 595
SfaNI GCATC 2 cut(s) 274, 546
Sfr274I CTCGAG 1 cut(s) 506
SfuI TTCGAA 1 cut(s) 192
SinI GGWCC 1 cut(s) 393
SlaI CTCGAG 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 6 cut(s) 251, 297, 387, 497, 630, 706
SspMI CTAG 3 cut(s) 131, 168, 399
StyD4I CCNGG 1 cut(s) 42
TaqI TCGA 4 cut(s) 157, 192, 507, 669
TasI AATT 6 cut(s) 251, 297, 387, 497, 630, 706
Tru1I TTAA 2 cut(s) 182, 419
Tru9I TTAA 2 cut(s) 182, 419
TscAI CASTG 1 cut(s) 532
TseI GCWGC 2 cut(s) 320, 513
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 427, 465
TspRI CASTG 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 393
XhoI CTCGAG 1 cut(s) 506
XspI CTAG 3 cut(s) 131, 168, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.