FvH4_6g10172

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000358
Physical Location & Seq
Forward (+)
6055223 .. 6055898
676 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10172.t1

Sequence Viewer

Length: 606 bp
ATGAACAGGATAGGAGCTGACGAAGTAGGCCAGATCCTGAGGCTGGTCACCGACCCAGCTGATAGAAAATCGGCGTCTCAGGTCTGCAAGGGGTGGTGGGTCATGGAGGGTCTGAGCCGATCAACACTCCGAGTTCTCAACATTGATCATCTTCCTCGATTACTTGCGTCATGCCCCAAATTGGAGGCCTTCATACTTGACCATATCTCACTTGCGGAAGCGGGATCCTTCGCTCGATTAATTGGAGGTCCCAACTCTGATGAGTTAGAGAAGAAAGTCCGGGCCCGTATGGAAGTTGGGGACCAAGGTTTGTGCGCTGTGGCAAATGGGTGTCCCAAGTTGTCCAAGATTGTGATCAATAACAATTATGCTGGAGTGCTTGGAATTATAGCCATGATTACTTCAGCAGCACATAACCTCACTCATTTGGAGTTGGAGACTTGTTCTTTGCTTACTGACCAAGCCCTTGAAGCAATCGGTTCATCTAGTTGCCGCCTTAGCTTTCTGAGTTTTAGATTTTCCTCCAAAATTACTGATGCCGGATTGAGATTTTTGGCAAATGGGTCTTGCTCAAAAACCATTAAGCAATTGAAACTTTGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

202

Amino Acids

21.76

Weight (kDa)

8.83

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 10 - 41 2.3e-09 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 215, 221, 493
AclWI GGATC 3 cut(s) 28, 219, 232
AcuI CTGAAG 1 cut(s) 387
AcyI GRCGYC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 43, 181
AgsI TTSAA 2 cut(s) 470, 592
AluBI AGCT 3 cut(s) 17, 59, 501
AluI AGCT 3 cut(s) 17, 59, 501
Alw26I GTCTC 2 cut(s) 81, 431
AlwI GGATC 3 cut(s) 28, 219, 232
AlwNI CAGNNNCTG 1 cut(s) 37
AoxI GGCC 3 cut(s) 28, 186, 282
ApaI GGGCCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 407
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
AseI ATTAAT 1 cut(s) 239
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 4 cut(s) 248, 282, 283, 301
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 2 cut(s) 248, 301
AxyI CCTNAGG 1 cut(s) 38
BaeGI GKGCMC 1 cut(s) 286
BamHI GGATCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 419
BclI TGATCA 2 cut(s) 145, 354
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 81, 431
BfaI CTAG 1 cut(s) 486
BisI GCNGC 2 cut(s) 408, 493
BlsI GCNGC 2 cut(s) 409, 494
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 2 cut(s) 248, 301
BmgT120I GGNCC 4 cut(s) 248, 282, 283, 301
BmiI GGNNCC 4 cut(s) 226, 250, 284, 302
BmrFI CCNGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 526
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 181
Bse21I CCTNAGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 304
BseJI GATNNNNATC 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 43, 181
BseMII CTCAG 4 cut(s) 29, 92, 104, 497
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 55
BshFI GGCC 3 cut(s) 30, 188, 284
BsiSI CCGG 2 cut(s) 280, 540
BslFI GGGAC 3 cut(s) 234, 314, 318
BslI CCNNNNNNNGG 2 cut(s) 43, 181
BsmAI GTCTC 2 cut(s) 81, 431
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 3 cut(s) 234, 314, 318
BsnI GGCC 3 cut(s) 30, 188, 284
Bsp120I GGGCCC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 5 cut(s) 33, 119, 145, 224, 354
BspACI CCGC 3 cut(s) 215, 221, 493
BspANI GGCC 3 cut(s) 30, 188, 284
BspCNI CTCAG 4 cut(s) 30, 91, 105, 498
BspLI GGNNCC 4 cut(s) 226, 250, 284, 302
BspPI GGATC 3 cut(s) 28, 219, 232
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 5 cut(s) 33, 119, 145, 224, 354
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 1 cut(s) 304
BstACI GRCGYC 1 cut(s) 74
BstDEI CTNAG 5 cut(s) 38, 78, 113, 497, 506
BstEII GGTNACC 1 cut(s) 46
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 5 cut(s) 36, 122, 148, 227, 357
BstMAI GTCTC 2 cut(s) 81, 431
BstMBI GATC 5 cut(s) 33, 119, 145, 224, 354
BstMWI GCNNNNNNNGC 2 cut(s) 470, 498
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 419
BstX2I RGATCY 2 cut(s) 33, 224
BstYI RGATCY 2 cut(s) 33, 224
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 3 cut(s) 30, 188, 284
CaiI CAGNNNCTG 1 cut(s) 37
CfoI GCGC 1 cut(s) 317
Cfr13I GGNCC 4 cut(s) 248, 282, 283, 301
CseI GACGC 2 cut(s) 63, 156
CviAII CATG 3 cut(s) 103, 171, 394
DdeI CTNAG 5 cut(s) 38, 78, 113, 497, 506
DpnI GATC 5 cut(s) 35, 121, 147, 226, 356
DpnII GATC 5 cut(s) 33, 119, 145, 224, 354
Eco130I CCWWGG 1 cut(s) 304
Eco147I AGGCCT 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 248, 301
Eco57I CTGAAG 1 cut(s) 387
Eco81I CCTNAGG 1 cut(s) 38
Eco91I GGTNACC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 304
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 3 cut(s) 106, 174, 397
FaiI YATR 9 cut(s) 104, 172, 194, 204, 290, 369, 389, 395, 414
FaqI GGGAC 3 cut(s) 234, 314, 318
FatI CATG 3 cut(s) 102, 170, 393
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 2 cut(s) 145, 354
Fnu4HI GCNGC 2 cut(s) 408, 493
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 408, 493
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 316
GluI GCNGC 2 cut(s) 408, 493
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 3 cut(s) 30, 188, 284
HapII CCGG 2 cut(s) 280, 540
HgaI GACGC 2 cut(s) 63, 156
HhaI GCGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 3 cut(s) 106, 174, 397
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HpaII CCGG 2 cut(s) 280, 540
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 114, 131, 259, 507
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 199, 238
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 498
HpyF3I CTNAG 5 cut(s) 38, 78, 113, 497, 506
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 3 cut(s) 106, 174, 397
HspAI GCGC 1 cut(s) 315
Ksp22I TGATCA 2 cut(s) 145, 354
Kzo9I GATC 5 cut(s) 33, 119, 145, 224, 354
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 8 cut(s) 29, 44, 50, 65, 69, 293, 357, 553
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 1 cut(s) 526
MaeI CTAG 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 46
MalI GATC 5 cut(s) 35, 121, 147, 226, 356
MboI GATC 5 cut(s) 33, 119, 145, 224, 354
MboII GAAGA 2 cut(s) 143, 283
MfeI CAATTG 1 cut(s) 587
MflI RGATCY 2 cut(s) 33, 224
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 6 cut(s) 179, 240, 364, 384, 528, 587
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 7 cut(s) 33, 100, 165, 178, 239, 428, 532
MseI TTAA 2 cut(s) 239, 582
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 2 cut(s) 280, 540
MspR9I CCNGG 1 cut(s) 281
MunI CAATTG 1 cut(s) 587
MwoI GCNNNNNNNGC 2 cut(s) 470, 498
NciI CCSGG 1 cut(s) 281
NdeII GATC 5 cut(s) 33, 119, 145, 224, 354
NlaIII CATG 3 cut(s) 106, 174, 397
NlaIV GGNNCC 4 cut(s) 226, 250, 284, 302
NmuCI GTSAC 1 cut(s) 46
PceI AGGCCT 1 cut(s) 188
PkrI GCNGC 2 cut(s) 409, 494
PpuMI RGGWCCY 1 cut(s) 248
PshBI ATTAAT 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 4 cut(s) 226, 250, 284, 302
PspOMI GGGCCC 1 cut(s) 282
PspPI GGNCC 4 cut(s) 248, 282, 283, 301
PspPPI RGGWCCY 1 cut(s) 248
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 2 cut(s) 33, 224
PvuII CAGCTG 1 cut(s) 59
SaqAI TTAA 2 cut(s) 239, 582
SatI GCNGC 2 cut(s) 408, 493
Sau3AI GATC 5 cut(s) 33, 119, 145, 224, 354
Sau96I GGNCC 4 cut(s) 248, 282, 283, 301
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 286
SetI ASST 7 cut(s) 19, 61, 84, 250, 310, 420, 503
SfaNI GCATC 1 cut(s) 526
SinI GGWCC 2 cut(s) 248, 301
Sse9I AATT 6 cut(s) 179, 240, 364, 384, 528, 587
SseBI AGGCCT 1 cut(s) 188
SsiI CCGC 3 cut(s) 215, 221, 493
SspMI CTAG 1 cut(s) 486
StuI AGGCCT 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 304
TaqI TCGA 2 cut(s) 157, 235
TasI AATT 6 cut(s) 179, 240, 364, 384, 528, 587
TauI GCSGC 1 cut(s) 495
Tru1I TTAA 2 cut(s) 239, 582
Tru9I TTAA 2 cut(s) 239, 582
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 407
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 17, 181, 471
VpaK11BI GGWCC 2 cut(s) 248, 301
VspI ATTAAT 1 cut(s) 239
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.