FvH4_6g11570

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000358
Physical Location & Seq
Forward (+)
6938169 .. 6941987
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11570.t6

Sequence Viewer

Length: 1179 bp
ATGAGTAAGATAGGACATGACGAACTCGGCCAAATCCTGGACCGGATCACCGACCCAGCTGATAGAAAATCAACCTCTCAGGTCTGCAAGGGGTGGTGGCTCATAGAGGCTCAGAGCCGAACATCACTCCGAGTTAATGACCCCCATCATCTTCCTCGATTACTTGCTAGGTACCCAAACTTAACCACATTCGAAACCCCAAGGGGAATGAGCAATGCCGACCTCGCATTGGTGGCCCAATCGTGCCCCAAATTGGAGGCCTTCATACTCGATGATATATCAATTAGTGTGGAAATTGGGAGACAAGGCATGCGGGCACTGGGATATACTTACCCGTATAGAGTTGGAGATGAAGATGCATTAGGGATCTCTAATGACGAAGCTCATGAGATATTAAGGGTCGTTAATGAAGTTGGGGACCAAGGTTTGTGCGCTTTGGCAGACGGGTGTCCCAAATTGTCCAAGATTGTGCTCAGAAGGACGGGGGCTGGACTGCTTGGAATAATGACCATGATTACTTCGGCGGCACATAACTTGACTCATTTGGATTTGGAGGGCTGTTCTTTGGTTACTGACCAAGTCCTTGAAGCAATTGGGTCCTCTAGTTGTCCCATTCGCATTTTGAGTTTGAGATTTTGCTCCGAAATTACTGATGCCGGATTGAGGTTTTTGGCAAATGGGTCTTGCTCAAAAACCATGGAGCAATTGAACCTTTCCAGCTGCCGTGAAATCACTGATGATGGGGTTTTGCTTTTGTGCAACATGTGTGTCTTGGAGGAGCTGGATTTGAGGTATTGTAACCAGCTAACTGATATTGGAGGTCAGGCAATCTCCACAATTCGAACCCTCAAGAAATTGAACTTGGACTGTCTATTCAACCTTACAGAAGAAACCTTTGTAGCTGTTGCTGAGAATTGCATAAACTTGGAGGTGCTTAATCTTCAACAATGTCATGTCACTGCAGCAAGTATAGATGCATTTTTGGGTCACAAATGCTTGCGATGCCTTAATCTTTTTTGTTGTATTTCTCATGATATAAAAGGATCTACTTTAGAAAGCCTAGCGCTGGGATGCCCTTCACTGGAGTCGATTGTGGTGCATAGAACTTGGAGACAGAGGCTGGTGCAGGACATGCAAGAGAATACTGTTAGCAGATTCCTCAAATTCTGGTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

393

Amino Acids

43.36

Weight (kDa)

5.42

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 7 - 41 3.2e-09 F-box
DUF7885 PF25372 137 - 344 1.9e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 37
AciI CCGC 2 cut(s) 313, 524
AclWI GGATC 3 cut(s) 53, 374, 1051
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 1 cut(s) 1163
AfaI GTAC 1 cut(s) 173
AfeI AGCGCT 1 cut(s) 1065
AfiI CCNNNNNNNGG 6 cut(s) 37, 229, 253, 663, 1066, 1081
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 5 cut(s) 587, 709, 859, 877, 944
AjnI CCWGG 1 cut(s) 36
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AluBI AGCT 6 cut(s) 59, 383, 720, 781, 805, 902
AluI AGCT 6 cut(s) 59, 383, 720, 781, 805, 902
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 2 cut(s) 295, 1105
AlwI GGATC 3 cut(s) 53, 374, 1051
AlwNI CAGNNNCTG 1 cut(s) 1120
Aor51HI AGCGCT 1 cut(s) 1065
AoxI GGCC 3 cut(s) 28, 234, 258
ApeKI GCWGC 2 cut(s) 720, 962
ApoI RAATTY 1 cut(s) 1163
Asp718I GGTACC 1 cut(s) 171
AspLEI GCGC 2 cut(s) 434, 1066
AspS9I GGNCC 4 cut(s) 40, 235, 418, 597
AsuHPI GGTGA 1 cut(s) 40
AsuII TTCGAA 2 cut(s) 192, 841
AvaII GGWCC 3 cut(s) 40, 418, 597
BaeGI GKGCMC 2 cut(s) 248, 319
BanI GGYRCC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 707, 974
BccI CCATC 2 cut(s) 153, 734
BceAI ACGGC 1 cut(s) 708
BcgI CGANNNNNNTGC 2 cut(s) 1078, 1112
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 2 cut(s) 295, 1105
BfaI CTAG 3 cut(s) 168, 603, 1061
BfmI CTRYAG 1 cut(s) 960
BfoI RGCGCY 1 cut(s) 1067
BisI GCNGC 3 cut(s) 525, 721, 963
BlsI GCNGC 3 cut(s) 526, 722, 964
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 3 cut(s) 40, 418, 597
BmgT120I GGNCC 4 cut(s) 40, 235, 418, 597
BmiI GGNNCC 3 cut(s) 173, 419, 598
BmrFI CCNGG 1 cut(s) 38
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 5 cut(s) 346, 643, 964, 992, 1061
BmuI ACTGGG 1 cut(s) 329
BoxI GACNNNNGTC 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 1103
Bpu14I TTCGAA 2 cut(s) 192, 841
BpuEI CTTGAG 1 cut(s) 833
BsaJI CCNNGG 3 cut(s) 200, 421, 696
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 229, 253, 663, 1066, 1081
Bse1I ACTGG 2 cut(s) 324, 1086
Bse3DI GCAATG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 200, 421, 696
BseGI GGATG 1 cut(s) 1076
BseLI CCNNNNNNNGG 6 cut(s) 37, 229, 253, 663, 1066, 1081
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 4 cut(s) 92, 125, 487, 900
BseNI ACTGG 2 cut(s) 324, 1086
BseRI GAGGAG 1 cut(s) 791
BseSI GKGCMC 2 cut(s) 248, 319
BseXI GCAGC 2 cut(s) 707, 974
BseYI CCCAGC 2 cut(s) 55, 1066
BsgI GTGCAG 1 cut(s) 1145
BshFI GGCC 3 cut(s) 30, 236, 260
BshNI GGYRCC 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 2 cut(s) 43, 657
BslFI GGGAC 3 cut(s) 431, 435, 594
BslI CCNNNNNNNGG 6 cut(s) 37, 229, 253, 663, 1066, 1081
BsmAI GTCTC 2 cut(s) 295, 1105
BsmFI GGGAC 3 cut(s) 431, 435, 594
BsnI GGCC 3 cut(s) 30, 236, 260
Bsp119I TTCGAA 2 cut(s) 192, 841
Bsp1286I GDGCHC 3 cut(s) 248, 319, 474
Bsp143I GATC 3 cut(s) 45, 366, 1043
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 2 cut(s) 313, 524
BspANI GGCC 3 cut(s) 30, 236, 260
BspCNI CTCAG 4 cut(s) 91, 124, 486, 901
BspHI TCATGA 2 cut(s) 385, 1030
BspLI GGNNCC 3 cut(s) 173, 419, 598
BspMAI CTGCAG 1 cut(s) 964
BspPI GGATC 3 cut(s) 53, 374, 1051
BspT104I TTCGAA 2 cut(s) 192, 841
BspT107I GGYRCC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 220
BsrI ACTGG 2 cut(s) 324, 1086
BssECI CCNNGG 3 cut(s) 200, 421, 696
BssMI GATC 3 cut(s) 45, 366, 1043
BssT1I CCWWGG 3 cut(s) 200, 421, 696
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 869, 1147
BstAPI GCANNNNNTGC 1 cut(s) 1132
BstBI TTCGAA 2 cut(s) 192, 841
BstC8I GCNNGC 3 cut(s) 311, 315, 998
BstDEI CTNAG 4 cut(s) 78, 111, 473, 909
BstDSI CCRYGG 1 cut(s) 696
BstF5I GGATG 1 cut(s) 1076
BstH2I RGCGCY 1 cut(s) 1067
BstHHI GCGC 2 cut(s) 434, 1066
BstKTI GATC 3 cut(s) 48, 369, 1046
BstMAI GTCTC 2 cut(s) 295, 1105
BstMBI GATC 3 cut(s) 45, 366, 1043
BstMWI GCNNNNNNNGC 4 cut(s) 224, 233, 1002, 1132
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 3 cut(s) 313, 766, 1135
BstPAI GACNNNNGTC 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 960
BstSLI GKGCMC 2 cut(s) 248, 319
BstV1I GCAGC 2 cut(s) 707, 974
BstX2I RGATCY 2 cut(s) 366, 1043
BstYI RGATCY 2 cut(s) 366, 1043
BsuRI GGCC 3 cut(s) 30, 236, 260
BtgI CCRYGG 1 cut(s) 696
BtgZI GCGATG 1 cut(s) 1015
BtsCI GGATG 1 cut(s) 1076
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 4 cut(s) 317, 732, 957, 1079
Cac8I GCNNGC 3 cut(s) 311, 315, 998
CaiI CAGNNNCTG 1 cut(s) 1120
CciI TCATGA 2 cut(s) 385, 1030
CfoI GCGC 2 cut(s) 434, 1066
Cfr13I GGNCC 4 cut(s) 40, 235, 418, 597
Csp6I GTAC 1 cut(s) 172
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 9 cut(s) 17, 310, 386, 511, 697, 763, 953, 1031, 1132
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 4 cut(s) 78, 111, 473, 909
DpnI GATC 3 cut(s) 47, 368, 1045
DpnII GATC 3 cut(s) 45, 366, 1043
EaeI YGGCCR 1 cut(s) 28
Eco130I CCWWGG 3 cut(s) 200, 421, 696
Eco147I AGGCCT 1 cut(s) 260
Eco47I GGWCC 3 cut(s) 40, 418, 597
Eco47III AGCGCT 1 cut(s) 1065
EcoO109I RGGNCCY 1 cut(s) 597
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 3 cut(s) 200, 421, 696
EcoT22I ATGCAT 2 cut(s) 361, 979
ErhI CCWWGG 3 cut(s) 200, 421, 696
FaeI CATG 9 cut(s) 20, 313, 389, 514, 700, 766, 956, 1034, 1135
FaqI GGGAC 3 cut(s) 431, 435, 594
FatI CATG 9 cut(s) 16, 309, 385, 510, 696, 762, 952, 1030, 1131
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 525, 721, 963
FokI GGATG 1 cut(s) 1083
Fsp4HI GCNGC 3 cut(s) 525, 721, 963
FspBI CTAG 3 cut(s) 168, 603, 1061
GlaI GCGC 2 cut(s) 433, 1065
GluI GCNGC 3 cut(s) 525, 721, 963
GsaI CCCAGC 2 cut(s) 59, 1070
GsuI CTGGAG 1 cut(s) 1103
HaeII RGCGCY 1 cut(s) 1067
HaeIII GGCC 3 cut(s) 30, 236, 260
HapII CCGG 2 cut(s) 43, 657
HhaI GCGC 2 cut(s) 434, 1066
Hin1II CATG 9 cut(s) 20, 313, 389, 514, 700, 766, 956, 1034, 1135
Hin6I GCGC 2 cut(s) 432, 1064
HinP1I GCGC 2 cut(s) 432, 1064
HinfI GANTC 3 cut(s) 538, 1085, 1155
HpaII CCGG 2 cut(s) 43, 657
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 4 cut(s) 114, 131, 476, 643
Hpy188III TCNNGA 3 cut(s) 386, 850, 1031
HpyAV CCTTC 3 cut(s) 271, 471, 1086
HpyCH4III ACNGT 2 cut(s) 869, 1147
HpyCH4V TGCA 9 cut(s) 87, 359, 759, 918, 962, 977, 1099, 1126, 1135
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 233, 1002, 1132
HpyF3I CTNAG 4 cut(s) 78, 111, 473, 909
Hsp92II CATG 9 cut(s) 20, 313, 389, 514, 700, 766, 956, 1034, 1135
HspAI GCGC 2 cut(s) 432, 1064
KpnI GGTACC 1 cut(s) 175
Kzo9I GATC 3 cut(s) 45, 366, 1043
LmnI GCTCC 3 cut(s) 644, 700, 778
Lsp1109I GCAGC 2 cut(s) 707, 974
LweI GCATC 5 cut(s) 346, 643, 964, 992, 1061
MaeI CTAG 3 cut(s) 168, 603, 1061
MaeIII GTNAC 4 cut(s) 568, 797, 955, 986
MalI GATC 3 cut(s) 47, 368, 1045
MboI GATC 3 cut(s) 45, 366, 1043
MboII GAAGA 4 cut(s) 143, 365, 899, 932
MfeI CAATTG 2 cut(s) 591, 704
MflI RGATCY 2 cut(s) 366, 1043
MhlI GDGCHC 3 cut(s) 248, 319, 474
MlyI GAGTC 2 cut(s) 532, 1094
MmeI TCCRAC 1 cut(s) 325
Mph1103I ATGCAT 2 cut(s) 361, 979
MseI TTAA 7 cut(s) 135, 182, 395, 405, 936, 1008, 1173
MspA1I CMGCKG 2 cut(s) 59, 720
MspI CCGG 2 cut(s) 43, 657
MspR9I CCNGG 1 cut(s) 38
MunI CAATTG 2 cut(s) 591, 704
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 224, 233, 1002, 1132
NcoI CCATGG 1 cut(s) 696
NdeII GATC 3 cut(s) 45, 366, 1043
NlaIII CATG 9 cut(s) 20, 313, 389, 514, 700, 766, 956, 1034, 1135
NlaIV GGNNCC 3 cut(s) 173, 419, 598
NmeAIII GCCGAG 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 955, 986
NsiI ATGCAT 2 cut(s) 361, 979
NspI RCATGY 3 cut(s) 313, 766, 1135
NspV TTCGAA 2 cut(s) 192, 841
PaeI GCATGC 1 cut(s) 313
PagI TCATGA 2 cut(s) 385, 1030
PceI AGGCCT 1 cut(s) 260
PciI ACATGT 1 cut(s) 762
PfeI GAWTC 1 cut(s) 1155
PflFI GACNNNGTC 1 cut(s) 578
PflMI CCANNNNNTGG 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 36
PkrI GCNGC 3 cut(s) 526, 722, 964
PleI GAGTC 2 cut(s) 532, 1093
PpsI GAGTC 2 cut(s) 532, 1093
PpuMI RGGWCCY 1 cut(s) 597
PscI ACATGT 1 cut(s) 762
PshAI GACNNNNGTC 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 36
PspFI CCCAGC 2 cut(s) 55, 1066
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 173, 419, 598
PspPI GGNCC 4 cut(s) 40, 235, 418, 597
PspPPI RGGWCCY 1 cut(s) 597
PstI CTGCAG 1 cut(s) 964
PstNI CAGNNNCTG 1 cut(s) 1120
PsuI RGATCY 2 cut(s) 366, 1043
PsyI GACNNNGTC 1 cut(s) 578
PvuII CAGCTG 2 cut(s) 59, 720
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 7 cut(s) 135, 182, 395, 405, 936, 1008, 1173
SatI GCNGC 3 cut(s) 525, 721, 963
Sau3AI GATC 3 cut(s) 45, 366, 1043
Sau96I GGNCC 4 cut(s) 40, 235, 418, 597
SchI GAGTC 2 cut(s) 532, 1094
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 3 cut(s) 248, 319, 474
SfaNI GCATC 5 cut(s) 346, 643, 964, 992, 1061
SfcI CTRYAG 1 cut(s) 960
SfuI TTCGAA 2 cut(s) 192, 841
SinI GGWCC 3 cut(s) 40, 418, 597
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
SphI GCATGC 1 cut(s) 313
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 2 cut(s) 313, 524
SspMI CTAG 3 cut(s) 168, 603, 1061
StuI AGGCCT 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 3 cut(s) 200, 421, 696
TaaI ACNGT 2 cut(s) 869, 1147
TaqI TCGA 5 cut(s) 157, 192, 270, 841, 1088
TauI GCSGC 1 cut(s) 527
TfiI GAWTC 1 cut(s) 1155
Tru1I TTAA 7 cut(s) 135, 182, 395, 405, 936, 1008, 1173
Tru9I TTAA 7 cut(s) 135, 182, 395, 405, 936, 1008, 1173
TscAI CASTG 4 cut(s) 324, 739, 964, 1086
TseFI GTSAC 2 cut(s) 955, 986
TseI GCWGC 2 cut(s) 720, 962
Tsp45I GTSAC 2 cut(s) 955, 986
TspDTI ATGAA 3 cut(s) 253, 366, 423
TspRI CASTG 4 cut(s) 324, 739, 964, 1086
Tth111I GACNNNGTC 1 cut(s) 578
Van91I CCANNNNNTGG 1 cut(s) 37
VpaK11BI GGWCC 3 cut(s) 40, 418, 597
XapI RAATTY 1 cut(s) 1163
XceI RCATGY 3 cut(s) 313, 766, 1135
XspI CTAG 3 cut(s) 168, 603, 1061
Zsp2I ATGCAT 2 cut(s) 361, 979
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.