Rorug06G0355100

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000358
Physical Location & Seq
Reverse (-)
50272740 .. 50273237
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0355100.1

Sequence Viewer

Length: 498 bp
ATGGCAACACTAGGCCTAATACTCTTCTTTCTGGTCTCTTTCTCAATCTCAACCCCATCTGCTTCTGTCAAGGACGAGCTGACCGCTTACGAAGCTCTCGAAGAGTATGACTTCCCAGTAGGCATTCTTCCCAAAGGCGTACTAAGCTACGAGCTAGACAATTCCACAGGCAAATTCTCAGTCTATTTGAATGGCTCTTGTACCTTTTCAATAGATTCATATCAGCTGAAGTACAAGTCCACCATAACGGGAGTGATAACCAAAGACAAGATCTCGAGCTTGAGTGGTATCACGGTCAAGGTGCTGTTCCTGTGGTTGAGCATTGTCACAGTGGTTCGAGACGACGATGAGATCCAGTTCTCTGTTGGGATCGCCTCCGCGGACTTTGCCGTCAGTAATTTCGTGGAGAGTCCGACGTGTGGTTGTGGATTTGATTGTGTCAATGTGGATGGAAGGAAGATCAAGTTTGATGATCAGTCACTAGTGTCCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

165

Amino Acids

17.88

Weight (kDa)

4.38

Isoelectric Point (pI)

25.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 29 - 134 1.9e-35 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AccII CGCG 1 cut(s) 380
AciI CCGC 3 cut(s) 84, 378, 380
AclWI GGATC 2 cut(s) 346, 377
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 3 cut(s) 141, 202, 233
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 2 cut(s) 190, 210
AhlI ACTAGT 1 cut(s) 481
AjiI CACGTC 1 cut(s) 417
AluBI AGCT 6 cut(s) 79, 95, 147, 154, 226, 279
AluI AGCT 6 cut(s) 79, 95, 147, 154, 226, 279
Alw26I GTCTC 2 cut(s) 40, 333
AlwI GGATC 2 cut(s) 346, 377
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
AvaI CYCGRG 1 cut(s) 274
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BccI CCATC 2 cut(s) 64, 443
BceAI ACGGC 1 cut(s) 374
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 40, 333
BcuI ACTAGT 1 cut(s) 481
BfaI CTAG 3 cut(s) 11, 155, 482
BglII AGATCT 1 cut(s) 270
BmeT110I CYCGRG 1 cut(s) 274
BmgBI CACGTC 1 cut(s) 417
BmrI ACTGGG 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 116, 355
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 454
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 116, 355
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 40, 333
BsmBI CGTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 274
Bsp143I GATC 5 cut(s) 270, 351, 369, 459, 472
BspACI CCGC 3 cut(s) 84, 378, 380
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 1 cut(s) 380
BspPI GGATC 2 cut(s) 346, 377
BspTNI GGTCTC 1 cut(s) 40
BsrI ACTGG 2 cut(s) 116, 355
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 5 cut(s) 270, 351, 369, 459, 472
Bst4CI ACNGT 2 cut(s) 295, 331
Bst6I CTCTTC 2 cut(s) 29, 96
BstDEI CTNAG 2 cut(s) 143, 178
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 1 cut(s) 380
BstKTI GATC 5 cut(s) 273, 354, 372, 462, 475
BstMAI GTCTC 2 cut(s) 40, 333
BstMBI GATC 5 cut(s) 270, 351, 369, 459, 472
BstMWI GCNNNNNNNGC 3 cut(s) 92, 144, 386
BstUI CGCG 1 cut(s) 380
BstX2I RGATCY 2 cut(s) 270, 351
BstYI RGATCY 2 cut(s) 270, 351
BsuRI GGCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 378
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 336
Cfr42I CCGCGG 1 cut(s) 381
Csp6I GTAC 3 cut(s) 140, 201, 232
CviJI RGCY 8 cut(s) 15, 79, 95, 147, 154, 195, 226, 279
CviKI_1 RGCY 8 cut(s) 15, 79, 95, 147, 154, 195, 226, 279
CviQI GTAC 3 cut(s) 140, 201, 232
DdeI CTNAG 2 cut(s) 143, 178
DpnI GATC 5 cut(s) 272, 353, 371, 461, 474
DpnII GATC 5 cut(s) 270, 351, 369, 459, 472
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
Eam1104I CTCTTC 2 cut(s) 29, 96
EarI CTCTTC 2 cut(s) 29, 96
Eco147I AGGCCT 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 274
Esp3I CGTCTC 1 cut(s) 333
FaiI YATR 3 cut(s) 108, 220, 245
FbaI TGATCA 1 cut(s) 472
FokI GGATG 1 cut(s) 461
FspBI CTAG 3 cut(s) 11, 155, 482
HaeIII GGCC 1 cut(s) 15
HinfI GANTC 2 cut(s) 215, 409
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 414
Hpy188III TCNNGA 3 cut(s) 98, 274, 338
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 2 cut(s) 347, 418
HpyAV CCTTC 1 cut(s) 447
HpyCH4III ACNGT 2 cut(s) 295, 331
HpyCH4IV ACGT 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 144, 386
HpyF3I CTNAG 2 cut(s) 143, 178
HpySE526I ACGT 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 472
KspI CCGCGG 1 cut(s) 381
Kzo9I GATC 5 cut(s) 270, 351, 369, 459, 472
LpnPI CCDG 5 cut(s) 17, 129, 153, 323, 368
MaeI CTAG 3 cut(s) 11, 155, 482
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 325, 477
MalI GATC 5 cut(s) 272, 353, 371, 461, 474
MboI GATC 5 cut(s) 270, 351, 369, 459, 472
MboII GAAGA 4 cut(s) 16, 113, 119, 469
MflI RGATCY 2 cut(s) 270, 351
MluCI AATT 3 cut(s) 160, 173, 397
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 1 cut(s) 385
MseI TTAA 1 cut(s) 496
MspA1I CMGCKG 2 cut(s) 226, 380
Mva1269I GAATGC 1 cut(s) 123
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 92, 144, 386
NdeII GATC 5 cut(s) 270, 351, 369, 459, 472
NmuCI GTSAC 2 cut(s) 325, 477
PaeR7I CTCGAG 1 cut(s) 274
PceI AGGCCT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 215
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PsuI RGATCY 2 cut(s) 270, 351
PvuII CAGCTG 1 cut(s) 226
RsaI GTAC 3 cut(s) 141, 202, 233
RsaNI GTAC 3 cut(s) 140, 201, 232
SacII CCGCGG 1 cut(s) 381
SaqAI TTAA 1 cut(s) 496
Sau3AI GATC 5 cut(s) 270, 351, 369, 459, 472
SchI GAGTC 1 cut(s) 418
SetI ASST 9 cut(s) 81, 97, 149, 156, 206, 228, 281, 303, 419
Sfr274I CTCGAG 1 cut(s) 274
Sfr303I CCGCGG 1 cut(s) 381
SgrBI CCGCGG 1 cut(s) 381
SlaI CTCGAG 1 cut(s) 274
SmlI CTYRAG 2 cut(s) 274, 280
SmoI CTYRAG 2 cut(s) 274, 280
SpeI ACTAGT 1 cut(s) 481
Sse9I AATT 3 cut(s) 160, 173, 397
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 3 cut(s) 84, 378, 380
SspMI CTAG 3 cut(s) 11, 155, 482
StuI AGGCCT 1 cut(s) 15
TaaI ACNGT 2 cut(s) 295, 331
TaiI ACGT 1 cut(s) 419
TaqI TCGA 3 cut(s) 99, 275, 337
TasI AATT 3 cut(s) 160, 173, 397
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 2 cut(s) 325, 477
Tsp45I GTSAC 2 cut(s) 325, 477
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 336
XapI RAATTY 1 cut(s) 173
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 274
XspI CTAG 3 cut(s) 11, 155, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.