Rh6DG461400

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000358
Physical Location & Seq
Reverse (-)
63098275 .. 63098859
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG461400.1

Sequence Viewer

Length: 585 bp
ATGGAGGGTCTGAGCCGATCGTCACTCCGAGTTCTCAACATGGATCATCTTCCTCGATTACTAGCTAGGTATCCAAACTTAGCCACATTCGAAACACCCAAGAGAATGAGCAATGCCGAGCTCGCATTGGTGGCCCAAACTGGAGGCCTTCAAACTATTGAGGAAATTGAAATGCAAGACATCCGCGCACTGGTACGATATGAATTAGAATTAGCGATCTCTGTTGATGAAGTAAGGGAGATATTACGGGTGGTTCATCAAGTTGGGGACGAAGGTTTGTGCGCTTTGGCAAATGGGTGTCCCAAATTGTCCGAGATTGTGCTCAAGAGGAGAAGGGTTGGGATGGTTGGAATCATGGCCATGATCACTTCAGCAGCACATCACTTGACTCATTTGGATTTGGAACTTTGTTCTTCGGTTTCGGACCAAGCCCTTGAAGCAATTGGGTCCTCTGCTTGTCCCATTTCGCGTTTTGAATTTGAAAGGTTGCTCCATTACTGGAGCCGGATTGAGATTTTTGGCAAATGGGTGTTGCTCAAAAACCATCGAGCAATTGAACCTTGCGTACTGCCCTGGAATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

194

Amino Acids

21.91

Weight (kDa)

6.24

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 186, 469
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 2 cut(s) 195, 567
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 6 cut(s) 152, 170, 437, 476, 482, 557
AjnI CCWGG 1 cut(s) 572
AluBI AGCT 2 cut(s) 65, 121
AluI AGCT 2 cut(s) 65, 121
Alw21I GWGCWC 2 cut(s) 123, 324
AlwI GGATC 1 cut(s) 51
AoxI GGCC 3 cut(s) 132, 145, 357
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 476
AspLEI GCGC 2 cut(s) 188, 284
AspS9I GGNCC 3 cut(s) 133, 424, 447
AsuII TTCGAA 1 cut(s) 90
AvaII GGWCC 2 cut(s) 424, 447
BalI TGGCCA 1 cut(s) 359
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 123, 324
BbvI GCAGC 1 cut(s) 386
BccI CCATC 2 cut(s) 337, 552
BciT130I CCWGG 1 cut(s) 574
BciVI GTATCC 1 cut(s) 81
BclI TGATCA 1 cut(s) 363
BfaI CTAG 2 cut(s) 62, 66
BfuI GTATCC 1 cut(s) 81
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 574
Bme18I GGWCC 2 cut(s) 424, 447
BmgT120I GGNCC 3 cut(s) 133, 424, 447
BmiI GGNNCC 2 cut(s) 448, 503
BmrFI CCNGG 1 cut(s) 574
BpmI CTGGAG 2 cut(s) 162, 520
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 572
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 3 cut(s) 145, 195, 503
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 2 cut(s) 180, 348
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 118
BseNI ACTGG 3 cut(s) 145, 195, 503
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 186, 469
Bsh1285I CGRYCG 1 cut(s) 20
BshFI GGCC 3 cut(s) 134, 147, 359
BsiEI CGRYCG 1 cut(s) 20
BsiHKAI GWGCWC 2 cut(s) 123, 324
BsiSI CCGG 1 cut(s) 505
BslFI GGGAC 3 cut(s) 281, 285, 444
BslI CCNNNNNNNGG 1 cut(s) 190
BsmFI GGGAC 3 cut(s) 281, 285, 444
BsnI GGCC 3 cut(s) 134, 147, 359
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 123, 324
Bsp143I GATC 4 cut(s) 17, 43, 216, 363
BspACI CCGC 1 cut(s) 184
BspANI GGCC 3 cut(s) 134, 147, 359
BspFNI CGCG 2 cut(s) 186, 469
BspLI GGNNCC 2 cut(s) 448, 503
BspPI GGATC 1 cut(s) 51
BspT104I TTCGAA 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 3 cut(s) 145, 195, 503
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 4 cut(s) 17, 43, 216, 363
Bst2UI CCWGG 1 cut(s) 574
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 11, 79
BstF5I GGATG 2 cut(s) 180, 348
BstFNI CGCG 2 cut(s) 186, 469
BstHHI GCGC 2 cut(s) 188, 284
BstKTI GATC 4 cut(s) 20, 46, 219, 366
BstMBI GATC 4 cut(s) 17, 43, 216, 363
BstMCI CGRYCG 1 cut(s) 20
BstMWI GCNNNNNNNGC 3 cut(s) 122, 131, 437
BstNI CCWGG 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 572
BstUI CGCG 2 cut(s) 186, 469
BstV1I GCAGC 1 cut(s) 386
BsuI GTATCC 1 cut(s) 81
BsuRI GGCC 3 cut(s) 134, 147, 359
BtsCI GGATG 2 cut(s) 180, 348
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 2 cut(s) 188, 284
Cfr13I GGNCC 3 cut(s) 133, 424, 447
Csp6I GTAC 2 cut(s) 194, 566
CviAII CATG 3 cut(s) 40, 355, 361
CviJI RGCY 9 cut(s) 15, 65, 83, 121, 134, 147, 359, 431, 504
CviKI_1 RGCY 9 cut(s) 15, 65, 83, 121, 134, 147, 359, 431, 504
CviQI GTAC 2 cut(s) 194, 566
DdeI CTNAG 2 cut(s) 11, 79
DpnI GATC 4 cut(s) 19, 45, 218, 365
DpnII GATC 4 cut(s) 17, 43, 216, 363
EaeI YGGCCR 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 424, 447
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 123
FaeI CATG 3 cut(s) 43, 358, 364
FaiI YATR 4 cut(s) 41, 201, 356, 362
FaqI GGGAC 3 cut(s) 281, 285, 444
FatI CATG 3 cut(s) 39, 354, 360
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 2 cut(s) 167, 355
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 2 cut(s) 62, 66
GlaI GCGC 2 cut(s) 187, 283
GluI GCNGC 1 cut(s) 375
GsuI CTGGAG 2 cut(s) 162, 520
HaeIII GGCC 3 cut(s) 134, 147, 359
HapII CCGG 1 cut(s) 505
HhaI GCGC 2 cut(s) 188, 284
Hin1II CATG 3 cut(s) 43, 358, 364
Hin6I GCGC 2 cut(s) 186, 282
HinP1I GCGC 2 cut(s) 186, 282
HinfI GANTC 3 cut(s) 351, 388, 577
HpaII CCGG 1 cut(s) 505
Hpy188I TCNGA 4 cut(s) 12, 29, 313, 424
Hpy188III TCNNGA 1 cut(s) 325
HpyAV CCTTC 3 cut(s) 158, 266, 327
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 131, 437
HpyF3I CTNAG 2 cut(s) 11, 79
Hsp92II CATG 3 cut(s) 43, 358, 364
HspAI GCGC 2 cut(s) 186, 282
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 4 cut(s) 17, 43, 216, 363
LmnI GCTCC 2 cut(s) 495, 501
LpnPI CCDG 5 cut(s) 126, 176, 484, 518, 559
Lsp1109I GCAGC 1 cut(s) 386
MaeI CTAG 2 cut(s) 62, 66
MaeIII GTNAC 1 cut(s) 21
MalI GATC 4 cut(s) 19, 45, 218, 365
MboI GATC 4 cut(s) 17, 43, 216, 363
MboII GAAGA 2 cut(s) 41, 405
MfeI CAATTG 2 cut(s) 441, 552
MhlI GDGCHC 2 cut(s) 123, 324
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 7 cut(s) 165, 203, 209, 305, 441, 476, 552
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 5 cut(s) 63, 137, 154, 321, 460
Mox20I TGGCCA 1 cut(s) 359
MscI TGGCCA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 359
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 1 cut(s) 574
MunI CAATTG 2 cut(s) 441, 552
MvaI CCWGG 1 cut(s) 574
MvnI CGCG 2 cut(s) 186, 469
MwoI GCNNNNNNNGC 3 cut(s) 122, 131, 437
NdeII GATC 4 cut(s) 17, 43, 216, 363
NlaIII CATG 3 cut(s) 43, 358, 364
NlaIV GGNNCC 2 cut(s) 448, 503
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 21
NspV TTCGAA 1 cut(s) 90
PceI AGGCCT 1 cut(s) 147
PfeI GAWTC 2 cut(s) 351, 577
PkrI GCNGC 1 cut(s) 376
Ple19I CGATCG 1 cut(s) 20
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 572
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 2 cut(s) 448, 503
PspPI GGNCC 3 cut(s) 133, 424, 447
PspPPI RGGWCCY 1 cut(s) 447
PsrI GAACNNNNNNTAC 2 cut(s) 549, 581
PvuI CGATCG 1 cut(s) 20
RsaI GTAC 2 cut(s) 195, 567
RsaNI GTAC 2 cut(s) 194, 566
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 123
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 4 cut(s) 17, 43, 216, 363
Sau96I GGNCC 3 cut(s) 133, 424, 447
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 574
SduI GDGCHC 2 cut(s) 123, 324
SetI ASST 6 cut(s) 67, 71, 123, 277, 488, 562
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 2 cut(s) 424, 447
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 7 cut(s) 165, 203, 209, 305, 441, 476, 552
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 1 cut(s) 184
SspMI CTAG 2 cut(s) 62, 66
SstI GAGCTC 1 cut(s) 123
StuI AGGCCT 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 572
TaqI TCGA 3 cut(s) 55, 90, 547
TasI AATT 7 cut(s) 165, 203, 209, 305, 441, 476, 552
TfiI GAWTC 2 cut(s) 351, 577
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 21
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 3 cut(s) 216, 243, 245
TspRI CASTG 1 cut(s) 195
VpaK11BI GGWCC 2 cut(s) 424, 447
XapI RAATTY 1 cut(s) 476
XspI CTAG 2 cut(s) 62, 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.