FvH4_2g32530

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000358
Physical Location & Seq
Reverse (-)
24634665 .. 24635791
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32530.t1

Sequence Viewer

Length: 1077 bp
ATGGTGGAGATTTCACAACTGAATGACGATCTATTAGGTCACATCCTGAAACGGGTCAGCGAACCAGGTGATCGGAAACGGGTGTCCGAAGTCTGCAAACAATGGTTGACAGTCGAGGGTCTAACCAGAACGTCGCTCAATCTTCTCCGACTCAGTTTTCTCCGTCAGGTACTTCCTCGATTCCCGAATCTAGTTACATTCGAGACATCCGAGCTTATCGAGAAGGAAGCGGACCTCAAGTTCTTAGCCCAAACATGCCGTAAACTGGAGGCCATCGATCTCAGCACCACAAAATACAGCTCAAGGTCATTACCGACGAGCGGTCTTTACGGTTTGTCAAGTGGCGGCGGCCTTGCGAAACTGTCCAAGCTTTCGGTCAGAGGGAGGCAGAATGTAGCCACTGATATTTGGCTACATAGGGTTGCTAATTTGACTTATTTGGATTTGGGAAACTGCAGGGTGGTCGATGACGATTCGGTTGAAGCAATTGGGCTTCTATGCACTTGTTTGAGCTATTTGAATTTGGAAAGATCCAATATTTCGAACAAAGGTTTGAGATCGTTGGCACATGGAAGTTGCTCAAAAACCCTGGAGACATTGGTGCTTGCTGAATGCTGTCGTATAAACGACTCCGGGATCTCGCATTTGCAGAATATGCAATGCTTGGAAGAGCTGGATTTGGAAAGCTGCGGCTGCGGGTATCGAAACGATGTCACTGATGTTGGAGTTATAGCTGCAACCTCTGGAAATCGATCCCTCAAGAAGTTGAACTTGAGTTGGTTGAGGAATGTATCAGACCAAAGCATGGTGTTTCTTGCTGAGAATTGCCCCAGCTTAGAGATTCTTGATGTAAGTGGTTGTTGTGTAACTGGTGCGGGGATTCGTGCACTTTCCAGTCACAGGTGCCTAAAGACTCTTGTTTTGGGAATCTCTCCTAAAGTCTCTTTTCGTTGGCCCGATGTCGAGCACTTGGTGCTTGGATGCCACTCACTCAAGTCTATCGTCCTGCCTAATAAGATCAAAGCAACCATTCCTGATAGCCTTAGCAGAATTGTGACGTTTGTTGATGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

359

Amino Acids

39.42

Weight (kDa)

7.85

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 6 - 44 1.3e-08 F-box
DUF7885 PF25372 130 - 293 2.7e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 903
AccB7I CCANNNNNTGG 1 cut(s) 805
AccBSI CCGCTC 1 cut(s) 321
AciI CCGC 7 cut(s) 230, 321, 345, 348, 690, 696, 875
AclWI GGATC 3 cut(s) 525, 644, 747
AcsI RAATTY 1 cut(s) 520
AdeI CACNNNGTG 1 cut(s) 973
AfaI GTAC 1 cut(s) 171
AfiI CCNNNNNNNGG 5 cut(s) 52, 265, 320, 805, 900
AgsI TTSAA 3 cut(s) 482, 520, 769
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 2 cut(s) 64, 588
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 8 cut(s) 214, 300, 370, 513, 673, 687, 734, 834
AluI AGCT 8 cut(s) 214, 300, 370, 513, 673, 687, 734, 834
Alw21I GWGCWC 2 cut(s) 889, 969
Alw26I GTCTC 3 cut(s) 197, 587, 946
Alw44I GTGCAC 1 cut(s) 885
AlwI GGATC 3 cut(s) 525, 644, 747
AoxI GGCC 3 cut(s) 270, 349, 953
ApaLI GTGCAC 1 cut(s) 885
ApeKI GCWGC 3 cut(s) 687, 693, 734
ApoI RAATTY 1 cut(s) 520
ArsI GACNNNNNNTTYG 2 cut(s) 904, 936
AspS9I GGNCC 2 cut(s) 232, 954
AsuC2I CCSGG 1 cut(s) 634
AsuHPI GGTGA 1 cut(s) 80
AsuII TTCGAA 1 cut(s) 542
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 889
BanI GGYRCC 1 cut(s) 903
Bbv12I GWGCWC 2 cut(s) 889, 969
BbvI GCAGC 3 cut(s) 674, 680, 721
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 243
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciT130I CCWGG 2 cut(s) 66, 590
BcnI CCSGG 1 cut(s) 634
BcoDI GTCTC 3 cut(s) 197, 587, 946
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 6 cut(s) 346, 349, 688, 691, 694, 735
BlsI GCNGC 6 cut(s) 347, 350, 689, 692, 695, 736
Bme1390I CCNGG 3 cut(s) 66, 590, 634
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 232, 954
BmiI GGNNCC 1 cut(s) 905
BmrFI CCNGG 3 cut(s) 66, 590, 634
BmsI GCATC 1 cut(s) 971
BpmI CTGGAG 2 cut(s) 287, 611
Bpu10I CCTNAGC 1 cut(s) 1043
Bpu14I TTCGAA 1 cut(s) 542
BpuEI CTTGAG 5 cut(s) 221, 286, 743, 793, 977
BpuMI CCSGG 1 cut(s) 634
Bsa29I ATCGAT 2 cut(s) 276, 751
BsaJI CCNNGG 1 cut(s) 588
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 265, 320, 805, 900
Bse1I ACTGG 3 cut(s) 270, 874, 894
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 66, 590
BseCI ATCGAT 2 cut(s) 276, 751
BseDI CCNNGG 1 cut(s) 588
BseGI GGATG 3 cut(s) 42, 206, 986
BseLI CCNNNNNNNGG 5 cut(s) 52, 265, 320, 805, 900
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 3 cut(s) 166, 295, 810
BseNI ACTGG 3 cut(s) 270, 874, 894
BseSI GKGCMC 1 cut(s) 889
BseXI GCAGC 3 cut(s) 674, 680, 721
BseYI CCCAGC 1 cut(s) 830
BshFI GGCC 3 cut(s) 272, 351, 955
BshNI GGYRCC 1 cut(s) 903
BshVI ATCGAT 2 cut(s) 276, 751
BsiHKAI GWGCWC 2 cut(s) 889, 969
BsiSI CCGG 1 cut(s) 633
BslI CCNNNNNNNGG 5 cut(s) 52, 265, 320, 805, 900
BsmAI GTCTC 3 cut(s) 197, 587, 946
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 3 cut(s) 272, 351, 955
Bsp119I TTCGAA 1 cut(s) 542
Bsp1286I GDGCHC 2 cut(s) 889, 969
Bsp143I GATC 8 cut(s) 28, 70, 277, 530, 557, 636, 752, 1017
BspACI CCGC 7 cut(s) 230, 321, 345, 348, 690, 696, 875
BspANI GGCC 3 cut(s) 272, 351, 955
BspCNI CTCAG 3 cut(s) 165, 294, 811
BspDI ATCGAT 2 cut(s) 276, 751
BspLI GGNNCC 1 cut(s) 905
BspMAI CTGCAG 1 cut(s) 458
BspPI GGATC 3 cut(s) 525, 644, 747
BspQI GCTCTTC 1 cut(s) 663
BspT104I TTCGAA 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 903
BsrBI CCGCTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 3 cut(s) 270, 874, 894
BssECI CCNNGG 1 cut(s) 588
BssMI GATC 8 cut(s) 28, 70, 277, 530, 557, 636, 752, 1017
Bst2UI CCWGG 2 cut(s) 66, 590
Bst4CI ACNGT 3 cut(s) 112, 332, 363
Bst6I CTCTTC 1 cut(s) 663
BstAPI GCANNNNNTGC 2 cut(s) 655, 973
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 6 cut(s) 152, 244, 281, 819, 835, 1043
BstF5I GGATG 3 cut(s) 42, 206, 986
BstKTI GATC 8 cut(s) 31, 73, 280, 533, 560, 639, 755, 1020
BstMAI GTCTC 3 cut(s) 197, 587, 946
BstMBI GATC 8 cut(s) 28, 70, 277, 530, 557, 636, 752, 1017
BstMWI GCNNNNNNNGC 3 cut(s) 655, 693, 973
BstNI CCWGG 2 cut(s) 66, 590
BstNSI RCATGY 1 cut(s) 258
BstSCI CCNGG 3 cut(s) 64, 588, 632
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 889
BstV1I GCAGC 3 cut(s) 674, 680, 721
BstX2I RGATCY 2 cut(s) 530, 636
BstYI RGATCY 2 cut(s) 530, 636
Bsu15I ATCGAT 2 cut(s) 276, 751
BsuRI GGCC 3 cut(s) 272, 351, 955
BsuTUI ATCGAT 2 cut(s) 276, 751
BtsCI GGATG 3 cut(s) 42, 206, 986
BtsIMutI CAGTG 2 cut(s) 399, 714
Cac8I GCNNGC 1 cut(s) 606
Cfr13I GGNCC 2 cut(s) 232, 954
ClaI ATCGAT 2 cut(s) 276, 751
CsiI ACCWGGT 1 cut(s) 64
Csp6I GTAC 1 cut(s) 170
CviAII CATG 3 cut(s) 255, 569, 805
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 6 cut(s) 152, 244, 281, 819, 835, 1043
DpnI GATC 8 cut(s) 30, 72, 279, 532, 559, 638, 754, 1019
DpnII GATC 8 cut(s) 28, 70, 277, 530, 557, 636, 752, 1017
DraIII CACNNNGTG 1 cut(s) 973
DriI GACNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 663
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 663
Eco47I GGWCC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 64, 588
FaeI CATG 3 cut(s) 258, 572, 808
FaiI YATR 8 cut(s) 256, 417, 499, 570, 623, 656, 731, 806
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FatI CATG 3 cut(s) 254, 568, 804
FauI CCCGC 2 cut(s) 689, 868
Fnu4HI GCNGC 6 cut(s) 346, 349, 688, 691, 694, 735
FokI GGATG 3 cut(s) 29, 193, 993
Fsp4HI GCNGC 6 cut(s) 346, 349, 688, 691, 694, 735
FspBI CTAG 1 cut(s) 191
GluI GCNGC 6 cut(s) 346, 349, 688, 691, 694, 735
GsaI CCCAGC 1 cut(s) 834
GsuI CTGGAG 2 cut(s) 287, 611
HaeIII GGCC 3 cut(s) 272, 351, 955
HapII CCGG 1 cut(s) 633
Hin1II CATG 3 cut(s) 258, 572, 808
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 9 cut(s) 150, 180, 187, 473, 629, 841, 880, 913, 927
HpaII CCGG 1 cut(s) 633
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 108, 263, 887
Hpy188I TCNGA 6 cut(s) 75, 88, 149, 211, 380, 796
Hpy188III TCNNGA 8 cut(s) 46, 184, 202, 220, 744, 760, 845, 1034
Hpy8I GTNNAC 3 cut(s) 108, 263, 887
Hpy99I CGWCG 2 cut(s) 136, 319
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 3 cut(s) 112, 332, 363
HpyCH4IV ACGT 2 cut(s) 131, 1058
HpyCH4V TGCA 7 cut(s) 96, 456, 501, 649, 658, 737, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 655, 693, 973
HpyF3I CTNAG 6 cut(s) 152, 244, 281, 819, 835, 1043
HpySE526I ACGT 2 cut(s) 131, 1058
Hsp92II CATG 3 cut(s) 258, 572, 808
Kzo9I GATC 8 cut(s) 28, 70, 277, 530, 557, 636, 752, 1017
LguI GCTCTTC 1 cut(s) 663
Lsp1109I GCAGC 3 cut(s) 674, 680, 721
LweI GCATC 1 cut(s) 971
MabI ACCWGGT 1 cut(s) 64
MaeI CTAG 1 cut(s) 191
MaeII ACGT 2 cut(s) 131, 1058
MaeIII GTNAC 6 cut(s) 38, 193, 712, 865, 896, 1054
MalI GATC 8 cut(s) 30, 72, 279, 532, 559, 638, 754, 1019
MbiI CCGCTC 1 cut(s) 321
MboI GATC 8 cut(s) 28, 70, 277, 530, 557, 636, 752, 1017
MboII GAAGA 2 cut(s) 134, 680
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 2 cut(s) 530, 636
MhlI GDGCHC 2 cut(s) 889, 969
MluCI AATT 5 cut(s) 427, 486, 520, 823, 1050
MlyI GAGTC 3 cut(s) 144, 623, 907
MmeI TCCRAC 2 cut(s) 172, 703
MnlI CCTC 9 cut(s) 109, 186, 245, 262, 374, 378, 751, 767, 777
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 3 cut(s) 66, 590, 634
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 617
MvaI CCWGG 2 cut(s) 66, 590
MwoI GCNNNNNNNGC 3 cut(s) 655, 693, 973
NciI CCSGG 1 cut(s) 634
NdeII GATC 8 cut(s) 28, 70, 277, 530, 557, 636, 752, 1017
NlaIII CATG 3 cut(s) 258, 572, 808
NlaIV GGNNCC 1 cut(s) 905
NmuCI GTSAC 4 cut(s) 38, 712, 896, 1054
NspI RCATGY 1 cut(s) 258
NspV TTCGAA 1 cut(s) 542
PciSI GCTCTTC 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PctI GAATGC 1 cut(s) 617
PfeI GAWTC 6 cut(s) 180, 187, 473, 841, 880, 927
PflMI CCANNNNNTGG 1 cut(s) 805
PfoI TCCNGGA 1 cut(s) 632
PkrI GCNGC 6 cut(s) 347, 350, 689, 692, 695, 736
PleI GAGTC 3 cut(s) 144, 623, 907
PpsI GAGTC 3 cut(s) 144, 623, 907
Psp6I CCWGG 2 cut(s) 64, 588
PspFI CCCAGC 1 cut(s) 830
PspGI CCWGG 2 cut(s) 64, 588
PspN4I GGNNCC 1 cut(s) 905
PspPI GGNCC 2 cut(s) 232, 954
PstI CTGCAG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 530, 636
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 663
SatI GCNGC 6 cut(s) 346, 349, 688, 691, 694, 735
Sau3AI GATC 8 cut(s) 28, 70, 277, 530, 557, 636, 752, 1017
Sau96I GGNCC 2 cut(s) 232, 954
SchI GAGTC 3 cut(s) 144, 623, 907
ScrFI CCNGG 3 cut(s) 66, 590, 634
SduI GDGCHC 2 cut(s) 889, 969
SexAI ACCWGGT 1 cut(s) 64
SfaNI GCATC 1 cut(s) 971
SfcI CTRYAG 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 542
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 5 cut(s) 236, 301, 758, 772, 992
SmoI CTYRAG 5 cut(s) 236, 301, 758, 772, 992
Sse9I AATT 5 cut(s) 427, 486, 520, 823, 1050
SsiI CCGC 7 cut(s) 230, 321, 345, 348, 690, 696, 875
SspI AATATT 1 cut(s) 538
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 3 cut(s) 64, 588, 632
TaaI ACNGT 3 cut(s) 112, 332, 363
TaiI ACGT 2 cut(s) 134, 1061
TaqII GACCGA 1 cut(s) 364
TasI AATT 5 cut(s) 427, 486, 520, 823, 1050
TauI GCSGC 3 cut(s) 348, 351, 693
TfiI GAWTC 6 cut(s) 180, 187, 473, 841, 880, 927
TscAI CASTG 2 cut(s) 406, 721
TseFI GTSAC 4 cut(s) 38, 712, 896, 1054
TseI GCWGC 3 cut(s) 687, 693, 734
Tsp45I GTSAC 4 cut(s) 38, 712, 896, 1054
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 406, 721
Van91I CCANNNNNTGG 1 cut(s) 805
VneI GTGCAC 1 cut(s) 885
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 520
XceI RCATGY 1 cut(s) 258
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.