Prupe.1G448200_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000358
Physical Location & Seq
Forward (+)
37854035 .. 37855630
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G448200.1

Sequence Viewer

Length: 1092 bp
ATGTCTAAGCTGGGTGATGACGAACTAGGCCTCATCCTTAACTGGATCACCGACCTAAATGACAGACGATCATTTTCTGAGGTCTGCAAGCAATGGCTGAGAGTGGAGGGGCTAAATAGATCATCACTTCGTCTTCTCGAACCCGATGCTCTCCTTCAAGTCTTACCCAGATTCCCAAATTTAGTCACATTCGAAACATCAAAGTTCATCACCGACGCCGACCTCTCATTCTTGGCCCAAACATGCCCCAAAATCGAGGTAATCAACCTCAGTCTGAAAACCCCACGTGAAATTTCATACCAATTTGATGAAGTATTGATCTTTGATAATGTTGGGGACGAAGGTCTTTGCGCTTTGGCAAAGGGGTGTCCCAAATTGTCCAAGGTTTTGCTCAGAAGGAGAAAGAATATTGGGAATTTTGGAGTTGTTTCGCTATTGAATTTATCACATAATTTGACGTATTTGGATTTGGGATTTTGTAGCTTGGTCTCGGACCTAGCCCTAGAAGCAATTGGGTCTGCAAATTCGATTAGCGTTTTGAGTTTGCAAGGTTGTTCATTGATTACAGATCGTGGATTGGGGTTTTTGGCAAAAGGGTCTTCCTCAAAAACCATGAAAAGGTTGAATCTTGCGGAGTGTGATAGAATCACAGACTTTGGGGTCTCGCTTTTGGAGCAAATGTGTTGCTTGGTGGAGCTGAATTTGGCTGAATGTGGCCCAAAAGTGACTGATATTGGAGGTCTTTCAATTGCTGCAATTCAGTCTCTTAAAAGATTGAACTTGTCATGGCTGGTCAATGTGTCAGATCATACGCTTGTTGCTCTAGCTGAGAATTGCCTGAATTTGGAGATGGTTGATTTAACTGGTTGTGATTTGGTAACTGGAGTTGGCATTCGTGCATTTGCAGGTCACAAGTGCTTAGAAGCTCTTGTTCTGCGTTCTTGTTTCAATGTTAGTGACTCTGATGTGGTACACATTGTGCTTAGATGCCAGTTCTTGAAGTCTGTTGTGTTGGATAAGGGACTGAGAATATGGATGTTGCCTCAGACACAAGAGAGCATTAGCAGATTCGCGGAGTTAGTTTGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

364

Amino Acids

39.98

Weight (kDa)

5.54

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 659
Acc36I ACCTGC 1 cut(s) 896
AccII CGCG 1 cut(s) 1073
AciI CCGC 2 cut(s) 632, 1073
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 7 cut(s) 178, 291, 415, 439, 523, 700, 841
AcvI CACGTG 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 216
AdeI CACNNNGTG 1 cut(s) 979
AfaI GTAC 1 cut(s) 972
AfiI CCNNNNNNNGG 2 cut(s) 618, 844
AgsI TTSAA 7 cut(s) 158, 439, 625, 747, 778, 949, 1000
AluBI AGCT 5 cut(s) 10, 483, 697, 827, 926
AluI AGCT 5 cut(s) 10, 483, 697, 827, 926
Alw26I GTCTC 3 cut(s) 493, 667, 768
AlwI GGATC 1 cut(s) 53
AoxI GGCC 3 cut(s) 28, 234, 715
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 7 cut(s) 178, 291, 415, 439, 523, 700, 841
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 3 cut(s) 235, 493, 716
AsuHPI GGTGA 3 cut(s) 26, 40, 202
AsuII TTCGAA 1 cut(s) 192
AvaII GGWCC 1 cut(s) 493
BbrPI CACGTG 1 cut(s) 287
BbsI GAAGAC 2 cut(s) 125, 591
BbvI GCAGC 1 cut(s) 739
BccI CCATC 1 cut(s) 844
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BcoDI GTCTC 3 cut(s) 493, 667, 768
BfaI CTAG 4 cut(s) 26, 497, 503, 824
BfuAI ACCTGC 1 cut(s) 896
BisI GCNGC 1 cut(s) 753
BlsI GCNGC 1 cut(s) 754
Bme18I GGWCC 1 cut(s) 493
BmgT120I GGNCC 3 cut(s) 235, 493, 716
BmsI GCATC 2 cut(s) 136, 977
BoxI GACNNNNGTC 1 cut(s) 342
BpiI GAAGAC 2 cut(s) 125, 591
BpmI CTGGAG 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 216
BsaI GGTCTC 2 cut(s) 493, 667
BsaJI CCNNGG 1 cut(s) 381
BsaXI ACNNNNNCTCC 2 cut(s) 665, 695
Bsc4I CCNNNNNNNGG 2 cut(s) 618, 844
Bse1I ACTGG 4 cut(s) 47, 868, 886, 991
Bse3DI GCAATG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 33, 1041
BseLI CCNNNNNNNGG 2 cut(s) 618, 844
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 7 cut(s) 69, 89, 283, 406, 819, 1016, 1058
BseNI ACTGG 4 cut(s) 47, 868, 886, 991
BseXI GCAGC 1 cut(s) 739
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 1073
BshFI GGCC 3 cut(s) 30, 236, 717
BslFI GGGAC 3 cut(s) 350, 354, 1035
BslI CCNNNNNNNGG 2 cut(s) 618, 844
BsmAI GTCTC 3 cut(s) 493, 667, 768
BsmFI GGGAC 3 cut(s) 350, 354, 1035
BsmI GAATGC 1 cut(s) 891
BsnI GGCC 3 cut(s) 30, 236, 717
Bso31I GGTCTC 2 cut(s) 493, 667
Bsp119I TTCGAA 1 cut(s) 192
Bsp143I GATC 6 cut(s) 45, 68, 119, 318, 568, 805
BspACI CCGC 2 cut(s) 632, 1073
BspANI GGCC 3 cut(s) 30, 236, 717
BspCNI CTCAG 7 cut(s) 70, 90, 282, 405, 820, 1017, 1057
BspFNI CGCG 1 cut(s) 1073
BspMI ACCTGC 1 cut(s) 896
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 192
BspTNI GGTCTC 2 cut(s) 493, 667
BsrDI GCAATG 1 cut(s) 98
BsrI ACTGG 4 cut(s) 47, 868, 886, 991
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 6 cut(s) 45, 68, 119, 318, 568, 805
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 381
BstACI GRCGYC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 287
BstBI TTCGAA 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 89
BstF5I GGATG 2 cut(s) 33, 1041
BstFNI CGCG 1 cut(s) 1073
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 6 cut(s) 48, 71, 122, 321, 571, 808
BstMAI GTCTC 3 cut(s) 493, 667, 768
BstMBI GATC 6 cut(s) 45, 68, 119, 318, 568, 805
BstMWI GCNNNNNNNGC 2 cut(s) 506, 673
BstNSI RCATGY 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 342
BstUI CGCG 1 cut(s) 1073
BstV1I GCAGC 1 cut(s) 739
BstV2I GAAGAC 2 cut(s) 125, 591
BsuRI GGCC 3 cut(s) 30, 236, 717
BtsCI GGATG 2 cut(s) 33, 1041
BveI ACCTGC 1 cut(s) 896
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 3 cut(s) 235, 493, 716
CseI GACGC 1 cut(s) 224
Csp6I GTAC 1 cut(s) 971
CviAII CATG 3 cut(s) 243, 613, 786
CviQI GTAC 1 cut(s) 971
DpnI GATC 6 cut(s) 47, 70, 121, 320, 570, 807
DpnII GATC 6 cut(s) 45, 68, 119, 318, 568, 805
DraIII CACNNNGTG 1 cut(s) 979
DrdI GACNNNNNNGTC 1 cut(s) 659
DseDI GACNNNNNNGTC 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 381
Eco147I AGGCCT 1 cut(s) 30
Eco31I GGTCTC 2 cut(s) 493, 667
Eco47I GGWCC 1 cut(s) 493
Eco72I CACGTG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 3 cut(s) 246, 616, 789
FaiI YATR 7 cut(s) 244, 298, 450, 614, 787, 810, 1033
FaqI GGGAC 3 cut(s) 350, 354, 1035
FatI CATG 3 cut(s) 242, 612, 785
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 2 cut(s) 20, 1048
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 4 cut(s) 26, 497, 503, 824
GlaI GCGC 1 cut(s) 352
GluI GCNGC 1 cut(s) 753
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 903
HaeIII GGCC 3 cut(s) 30, 236, 717
HgaI GACGC 1 cut(s) 224
HhaI GCGC 1 cut(s) 353
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 3 cut(s) 246, 616, 789
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HinfI GANTC 5 cut(s) 171, 625, 645, 959, 1068
HphI GGTGA 3 cut(s) 26, 40, 202
Hpy166II GTNNAC 1 cut(s) 973
Hpy188I TCNGA 7 cut(s) 79, 276, 395, 493, 805, 964, 1047
Hpy188III TCNNGA 2 cut(s) 137, 997
Hpy8I GTNNAC 1 cut(s) 973
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 164, 335, 390
HpyCH4IV ACGT 2 cut(s) 286, 458
HpyCH4V TGCA 6 cut(s) 87, 521, 547, 755, 899, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 673
HpySE526I ACGT 2 cut(s) 286, 458
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 3 cut(s) 246, 616, 789
HspAI GCGC 1 cut(s) 351
Kzo9I GATC 6 cut(s) 45, 68, 119, 318, 568, 805
LmnI GCTCC 2 cut(s) 673, 694
LpnPI CCDG 8 cut(s) 28, 181, 776, 849, 851, 867, 891, 1004
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 2 cut(s) 136, 977
MaeI CTAG 4 cut(s) 26, 497, 503, 824
MaeII ACGT 2 cut(s) 286, 458
MaeIII GTNAC 5 cut(s) 184, 724, 877, 908, 956
MalI GATC 6 cut(s) 47, 70, 121, 320, 570, 807
MboI GATC 6 cut(s) 45, 68, 119, 318, 568, 805
MboII GAAGA 2 cut(s) 125, 591
MfeI CAATTG 2 cut(s) 510, 747
MlyI GAGTC 1 cut(s) 953
MmeI TCCRAC 1 cut(s) 993
MnlI CCTC 9 cut(s) 41, 73, 100, 233, 250, 278, 613, 731, 1053
MseI TTAA 3 cut(s) 39, 768, 860
MunI CAATTG 2 cut(s) 510, 747
Mva1269I GAATGC 1 cut(s) 891
MvnI CGCG 1 cut(s) 1073
MwoI GCNNNNNNNGC 2 cut(s) 506, 673
NdeII GATC 6 cut(s) 45, 68, 119, 318, 568, 805
NlaIII CATG 3 cut(s) 246, 616, 789
NmuCI GTSAC 4 cut(s) 184, 724, 908, 956
NspI RCATGY 1 cut(s) 246
NspV TTCGAA 1 cut(s) 192
PceI AGGCCT 1 cut(s) 30
PctI GAATGC 1 cut(s) 891
PfeI GAWTC 4 cut(s) 171, 625, 645, 1068
PkrI GCNGC 1 cut(s) 754
PleI GAGTC 1 cut(s) 953
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
PpsI GAGTC 1 cut(s) 953
Ppu21I YACGTR 1 cut(s) 287
PshAI GACNNNNGTC 1 cut(s) 342
PspCI CACGTG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 10
PspPI GGNCC 3 cut(s) 235, 493, 716
RsaI GTAC 1 cut(s) 972
RsaNI GTAC 1 cut(s) 971
SaqAI TTAA 3 cut(s) 39, 768, 860
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 6 cut(s) 45, 68, 119, 318, 568, 805
Sau96I GGNCC 3 cut(s) 235, 493, 716
SchI GAGTC 1 cut(s) 953
SfaNI GCATC 2 cut(s) 136, 977
SfuI TTCGAA 1 cut(s) 192
SinI GGWCC 1 cut(s) 493
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 2 cut(s) 632, 1073
SspI AATATT 1 cut(s) 409
SspMI CTAG 4 cut(s) 26, 497, 503, 824
StuI AGGCCT 1 cut(s) 30
StyI CCWWGG 1 cut(s) 381
TaiI ACGT 2 cut(s) 289, 461
TaqI TCGA 4 cut(s) 138, 192, 255, 527
TfiI GAWTC 4 cut(s) 171, 625, 645, 1068
Tru1I TTAA 3 cut(s) 39, 768, 860
Tru9I TTAA 3 cut(s) 39, 768, 860
TseFI GTSAC 4 cut(s) 184, 724, 908, 956
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 4 cut(s) 184, 724, 908, 956
TspDTI ATGAA 5 cut(s) 196, 285, 324, 546, 629
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 7 cut(s) 178, 291, 415, 439, 523, 700, 841
XceI RCATGY 1 cut(s) 246
XspI CTAG 4 cut(s) 26, 497, 503, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.