Rmu_sc0005634.1_g000011

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005634.1
OG0000358
Physical Location & Seq
Forward (+)
50505 .. 51719
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005634.1_g000011.1.cds

Sequence Viewer

Length: 1215 bp
atgtcgcagaaaacgaaacgtcacccatcatctcaattctcaagctttcaatctttcactacaacgcaagtcgtcgtcagtctcgctgtttcagccaaacagagagaaaaaatgggaaaagaattggggagaattcccttgctgtgtcacgaagaacttggcctaatcctcaccaagctcagcgacgcaggtgacagaaaaaccttctcccaggtctgcaaggaatggtttcaagtcgaggctctacaccgatcatcactccgtcttctccgacaccaatttctccgtcaggtactccctagattcccaaatttactcacattcgaaacctccgagcctgtcaccgacgctgacgtcgaattcttagcccaaacatgcccccaactcgagaccattgaccttactacgtcaggtcataaacccttcagtctcttggggtttggtctagtggtggtagcaaatagatgtccaaaattatccaaggtcttgcttaagaggagaaggtctattactgatcccgtaattgtttcgctcataaagttagcacccaatttggcacatttggatttgggaggttgttataacatctcggatagagccctcaaagcaattgggtgttgtggttcacttagctatttagatttggagtcgtgcggttttacggatcgtggattgggttttcttgcaaatgggtcttgctcgaaaacgttaaagacattgatactaggttggtgtaagggaattactgatgttggggtctcaagtttgcagaaaatgcaatgcttggagcacctgaatttgtccaacagttcgaggcataagatcactgacattgggggtgtcgcaatctcggccattaagacccttaagaaattgaacttggctgcgctggccaaactgtccaaccgcacagttgctgctctggctcagaattgccccaacttggaggtgcttgatataagtgaatgtaggttgttaactggagctggtattcgtgcattttcgggtcacgtgtgcttggaaacgattgttttgcatcgtcttcatcaagttagcgcatctgatttggaacacttggtgctgggatgcccgtcattgaagtctatacttctgcatggtgaggagagtttgagcaagatattgcccctgatgcgagagagcactagaaaactcgtgaggatgggtagcgcttttccaacctattcctcaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

404

Amino Acids

44.29

Weight (kDa)

9.36

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AarI CACCTGC 1 cut(s) 179
AasI GACNNNNNNGTC 1 cut(s) 353
AatII GACGTC 1 cut(s) 357
Acc36I ACCTGC 1 cut(s) 179
AciI CCGC 2 cut(s) 654, 907
AclI AACGTT 1 cut(s) 707
AclWI GGATC 2 cut(s) 509, 672
AcoI YGGCCR 2 cut(s) 852, 891
AcsI RAATTY 4 cut(s) 132, 310, 359, 796
AcuI CTGAAG 1 cut(s) 409
AcvI CACGTG 1 cut(s) 1012
AcyI GRCGYC 1 cut(s) 354
AdeI CACNNNGTG 1 cut(s) 1078
AfaI GTAC 1 cut(s) 294
AfeI AGCGCT 1 cut(s) 1189
AfiI CCNNNNNNNGG 1 cut(s) 943
AflII CTTAAG 2 cut(s) 491, 866
AflIII ACRYGT 1 cut(s) 1011
AgsI TTSAA 4 cut(s) 50, 233, 877, 1099
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AluBI AGCT 4 cut(s) 45, 178, 633, 986
AluI AGCT 4 cut(s) 45, 178, 633, 986
Alw21I GWGCWC 2 cut(s) 792, 1163
Alw26I GTCTC 4 cut(s) 86, 383, 434, 763
AlwI GGATC 2 cut(s) 509, 672
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 1 cut(s) 386
Aor51HI AGCGCT 1 cut(s) 1189
AoxI GGCC 3 cut(s) 160, 852, 891
ApeKI GCWGC 2 cut(s) 884, 917
ApoI RAATTY 4 cut(s) 132, 310, 359, 796
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 3 cut(s) 889, 1058, 1190
AsuHPI GGTGA 5 cut(s) 14, 163, 203, 334, 1130
AsuII TTCGAA 1 cut(s) 324
AvaI CYCGRG 1 cut(s) 386
BalI TGGCCA 1 cut(s) 893
BanII GRGCYC 1 cut(s) 601
BarI GAAGNNNNNNTAC 2 cut(s) 493, 525
BauI CACGAG 1 cut(s) 1172
BbrPI CACGTG 1 cut(s) 1012
BbsI GAAGAC 2 cut(s) 257, 1034
Bbv12I GWGCWC 2 cut(s) 792, 1163
BbvI GCAGC 2 cut(s) 871, 904
BccI CCATC 2 cut(s) 34, 1174
BcgI CGANNNNNNTGC 2 cut(s) 1015, 1049
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 4 cut(s) 86, 383, 434, 763
BfaI CTAG 4 cut(s) 300, 446, 725, 1164
BfoI RGCGCY 1 cut(s) 1191
BfrI CTTAAG 2 cut(s) 491, 866
BfuAI ACCTGC 1 cut(s) 179
BisI GCNGC 2 cut(s) 885, 918
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 2 cut(s) 886, 919
Bme1390I CCNGG 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 4 cut(s) 1045, 1067, 1076, 1140
BpiI GAAGAC 2 cut(s) 257, 1034
BpmI CTGGAG 1 cut(s) 1002
Bpu1102I GCTNAGC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 2 cut(s) 25, 745
BsaAI YACGTR 1 cut(s) 1012
BsaHI GRCGYC 1 cut(s) 354
BsaI GGTCTC 2 cut(s) 383, 763
BsaJI CCNNGG 2 cut(s) 210, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 943
Bse1I ACTGG 1 cut(s) 985
Bse3DI GCAATG 1 cut(s) 785
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 210, 480
BseGI GGATG 2 cut(s) 1091, 1185
BseLI CCNNNNNNNGG 1 cut(s) 943
BseMI GCAATG 1 cut(s) 785
BseMII CTCAG 2 cut(s) 193, 941
BseNI ACTGG 1 cut(s) 985
BseRI GAGGAG 2 cut(s) 511, 1136
BseXI GCAGC 2 cut(s) 871, 904
BseYI CCCAGC 1 cut(s) 1081
BshFI GGCC 3 cut(s) 162, 854, 893
BsiHKAI GWGCWC 2 cut(s) 792, 1163
BsiHKCI CYCGRG 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 943
BsmAI GTCTC 4 cut(s) 86, 383, 434, 763
BsnI GGCC 3 cut(s) 162, 854, 893
Bso31I GGTCTC 2 cut(s) 383, 763
BsoBI CYCGRG 1 cut(s) 386
Bsp119I TTCGAA 1 cut(s) 324
Bsp1286I GDGCHC 3 cut(s) 601, 792, 1163
Bsp143I GATC 4 cut(s) 251, 514, 664, 822
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 2 cut(s) 654, 907
BspANI GGCC 3 cut(s) 162, 854, 893
BspCNI CTCAG 2 cut(s) 192, 940
BspMI ACCTGC 1 cut(s) 179
BspPI GGATC 2 cut(s) 509, 672
BspT104I TTCGAA 1 cut(s) 324
BspTI CTTAAG 2 cut(s) 491, 866
BspTNI GGTCTC 2 cut(s) 383, 763
BsrDI GCAATG 1 cut(s) 785
BsrI ACTGG 1 cut(s) 985
BssECI CCNNGG 2 cut(s) 210, 480
BssMI GATC 4 cut(s) 251, 514, 664, 822
BssNI GRCGYC 1 cut(s) 354
BssSI CACGAG 1 cut(s) 1172
BssT1I CCWWGG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 1172
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 809, 900, 913
BstACI GRCGYC 1 cut(s) 354
BstAFI CTTAAG 2 cut(s) 491, 866
BstAPI GCANNNNNTGC 1 cut(s) 775
BstBAI YACGTR 1 cut(s) 1012
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 4 cut(s) 179, 364, 629, 927
BstF5I GGATG 2 cut(s) 1091, 1185
BstH2I RGCGCY 1 cut(s) 1191
BstHHI GCGC 3 cut(s) 889, 1058, 1190
BstKTI GATC 4 cut(s) 254, 517, 667, 825
BstMAI GTCTC 4 cut(s) 86, 383, 434, 763
BstMBI GATC 4 cut(s) 251, 514, 664, 822
BstMWI GCNNNNNNNGC 7 cut(s) 92, 605, 775, 851, 890, 923, 1150
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 2 cut(s) 871, 904
BstV2I GAAGAC 2 cut(s) 257, 1034
BsuRI GGCC 3 cut(s) 162, 854, 893
BtsCI GGATG 2 cut(s) 1091, 1185
BtsIMutI CAGTG 1 cut(s) 825
BveI ACCTGC 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 891
CaiI CAGNNNCTG 1 cut(s) 917
CfoI GCGC 3 cut(s) 889, 1058, 1190
CseI GACGC 2 cut(s) 194, 356
Csp6I GTAC 1 cut(s) 293
CviAII CATG 2 cut(s) 375, 1115
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 4 cut(s) 179, 364, 629, 927
DpnI GATC 4 cut(s) 253, 516, 666, 824
DpnII GATC 4 cut(s) 251, 514, 664, 822
DraIII CACNNNGTG 1 cut(s) 1078
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 2 cut(s) 852, 891
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 601
Eco31I GGTCTC 2 cut(s) 383, 763
Eco47III AGCGCT 1 cut(s) 1189
Eco57I CTGAAG 1 cut(s) 409
Eco72I CACGTG 1 cut(s) 1012
Eco88I CYCGRG 1 cut(s) 386
EcoRI GAATTC 2 cut(s) 132, 359
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 2 cut(s) 378, 1118
FaiI YATR 8 cut(s) 376, 417, 536, 582, 819, 959, 1106, 1116
FatI CATG 2 cut(s) 374, 1114
Fnu4HI GCNGC 2 cut(s) 885, 918
FokI GGATG 2 cut(s) 1098, 1192
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 2 cut(s) 885, 918
FspBI CTAG 4 cut(s) 300, 446, 725, 1164
GlaI GCGC 3 cut(s) 888, 1057, 1189
GluI GCNGC 2 cut(s) 885, 918
GsaI CCCAGC 1 cut(s) 1085
GsuI CTGGAG 1 cut(s) 1002
HaeII RGCGCY 1 cut(s) 1191
HaeIII GGCC 3 cut(s) 162, 854, 893
HgaI GACGC 2 cut(s) 194, 356
HhaI GCGC 3 cut(s) 889, 1058, 1190
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 2 cut(s) 378, 1118
Hin6I GCGC 3 cut(s) 887, 1056, 1188
HinP1I GCGC 3 cut(s) 887, 1056, 1188
HincII GTYRAC 1 cut(s) 978
HindII GTYRAC 1 cut(s) 978
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 2 cut(s) 303, 647
HpaI GTTAAC 1 cut(s) 978
HphI GGTGA 5 cut(s) 14, 163, 203, 334, 1130
Hpy166II GTNNAC 2 cut(s) 626, 978
Hpy188I TCNGA 5 cut(s) 272, 334, 592, 930, 1063
Hpy188III TCNNGA 3 cut(s) 149, 388, 1174
Hpy8I GTNNAC 2 cut(s) 626, 978
Hpy99I CGWCG 4 cut(s) 77, 188, 350, 359
HpyAV CCTTC 3 cut(s) 214, 433, 495
HpyCH4III ACNGT 3 cut(s) 809, 900, 913
HpyCH4IV ACGT 5 cut(s) 19, 354, 407, 707, 1011
HpyCH4V TGCA 7 cut(s) 219, 686, 769, 778, 998, 1036, 1114
HpyF10VI GCNNNNNNNGC 7 cut(s) 92, 605, 775, 851, 890, 923, 1150
HpyF3I CTNAG 4 cut(s) 179, 364, 629, 927
HpySE526I ACGT 5 cut(s) 19, 354, 407, 707, 1011
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 2 cut(s) 378, 1118
HspAI GCGC 3 cut(s) 887, 1056, 1188
KspAI GTTAAC 1 cut(s) 978
Kzo9I GATC 4 cut(s) 251, 514, 664, 822
LmnI GCTCC 2 cut(s) 787, 983
Lsp1109I GCAGC 2 cut(s) 871, 904
LweI GCATC 4 cut(s) 1045, 1067, 1076, 1140
MaeI CTAG 4 cut(s) 300, 446, 725, 1164
MaeII ACGT 5 cut(s) 19, 354, 407, 707, 1011
MaeIII GTNAC 5 cut(s) 20, 146, 191, 340, 1007
MalI GATC 4 cut(s) 253, 516, 666, 824
MboI GATC 4 cut(s) 251, 514, 664, 822
MboII GAAGA 3 cut(s) 164, 257, 1034
MfeI CAATTG 1 cut(s) 609
MhlI GDGCHC 3 cut(s) 601, 792, 1163
MlsI TGGCCA 1 cut(s) 893
MluNI TGGCCA 1 cut(s) 893
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 3 cut(s) 295, 828, 927
Mox20I TGGCCA 1 cut(s) 893
MroXI GAANNNNTTC 1 cut(s) 228
MscI TGGCCA 1 cut(s) 893
MseI TTAA 5 cut(s) 492, 710, 858, 867, 977
Msp20I TGGCCA 1 cut(s) 893
MspCI CTTAAG 2 cut(s) 491, 866
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 609
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 7 cut(s) 92, 605, 775, 851, 890, 923, 1150
NdeII GATC 4 cut(s) 251, 514, 664, 822
NlaIII CATG 2 cut(s) 378, 1118
NmeAIII GCCGAG 1 cut(s) 830
NmuCI GTSAC 5 cut(s) 20, 146, 191, 340, 1007
NspI RCATGY 1 cut(s) 378
NspV TTCGAA 1 cut(s) 324
PaeR7I CTCGAG 1 cut(s) 386
PaqCI CACCTGC 1 cut(s) 179
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 330, 354
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 2 cut(s) 886, 919
PleI GAGTC 1 cut(s) 655
PmaCI CACGTG 1 cut(s) 1012
PmlI CACGTG 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 655
Ppu21I YACGTR 1 cut(s) 1012
PsiI TTATAA 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 707
Psp6I CCWGG 1 cut(s) 210
PspCI CACGTG 1 cut(s) 1012
PspFI CCCAGC 1 cut(s) 1081
PspGI CCWGG 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 917
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 5 cut(s) 492, 710, 858, 867, 977
SatI GCNGC 2 cut(s) 885, 918
Sau3AI GATC 4 cut(s) 251, 514, 664, 822
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 3 cut(s) 601, 792, 1163
SfaNI GCATC 4 cut(s) 1045, 1067, 1076, 1140
Sfr274I CTCGAG 1 cut(s) 386
SfuI TTCGAA 1 cut(s) 324
SlaI CTCGAG 1 cut(s) 386
SmlI CTYRAG 5 cut(s) 40, 386, 491, 760, 866
SmoI CTYRAG 5 cut(s) 40, 386, 491, 760, 866
SsiI CCGC 2 cut(s) 654, 907
SspMI CTAG 4 cut(s) 300, 446, 725, 1164
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 3 cut(s) 809, 900, 913
TaiI ACGT 5 cut(s) 22, 357, 410, 710, 1014
TaqI TCGA 6 cut(s) 237, 324, 357, 387, 701, 812
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 5 cut(s) 492, 710, 858, 867, 977
Tru9I TTAA 5 cut(s) 492, 710, 858, 867, 977
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 5 cut(s) 20, 146, 191, 340, 1007
TseI GCWGC 2 cut(s) 884, 917
Tsp45I GTSAC 5 cut(s) 20, 146, 191, 340, 1007
TspDTI ATGAA 1 cut(s) 1034
TspGWI ACGGA 3 cut(s) 251, 275, 677
TspRI CASTG 1 cut(s) 832
Vha464I CTTAAG 2 cut(s) 491, 866
XapI RAATTY 4 cut(s) 132, 310, 359, 796
XceI RCATGY 1 cut(s) 378
XhoI CTCGAG 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 4 cut(s) 300, 446, 725, 1164
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.