RchiOBHm_Chr2g0157401

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000358
Physical Location & Seq
Forward (+)
73793816 .. 73796157
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52613

Sequence Viewer

Length: 1194 bp
ATGGGTATCCATGGAGGTTTGGTCAGGAGTGTCTTTTCGAGAAACCGATCTTTTAAGACTCATGAGAGCAATGGGAGGAACAATATGACAGAACGGAGAAGATGGAGCTCAGTTAGACTCAGATCATATCTATGTGGGGATGAATTTAAGTCAGTGGTTGCAGACAAGGATTCAGCTTCAGTTAGGAGCTTTGAGGCTAGTGTATCGCAGCTCAATTCGGTGCTTGTAGAGGTGGATTCTTGTTCTGCTGAGAGCTCTGAGGCCACTGTTACACAACCATTGCAAGAAGACTTAACAGACAAGAAAGATATGCACGTCTACAACACAATGTCTGAAGAGCAAGCAGCAATCATCATCCAGTCAGCATTTAGAGGCTTTCTGACTAGGTGTCAAAATGAAAGGATCAAATCAGAGGTTGGTAAACAGGAGCTTATTGTAGGATCAGAAAGTCCAAGTATGGAGTCTCTGGGGACATCAGTTGAAGTTCAAACAGGAAATTCGGTGGAAGTGCACTCTATACAGGAGGAAAACTTGGCTGCTCAACACCGGCTGACACAACAGAAAGCTAGAGCGCAAGTGCTAAGGCTTAAGGAAGACTGGGATGATAGCACATTGAGTAGCAACATGTCAAAAATGAGGATGCAGAACAGAATGGAAGCGACAACCAGGCGTGAGAGAGCGTTAGCTTATGCTTTTTCACAACAGCTACGGATCTGTTCAAAGAAAAAACATGCGAAATCTGATGGCACAGAACAGAATATGGGGTGGAGCTGGCTAGAACGATGGATGGCAACCCGCCTCCCTGAAAGCTCAAGCTCATTGGTTGAAACTCCTACAAGCAATATTCAGCAGGTCGAGCCAATTTACAGCAACCAAAGAGTTGTGATGATCAGGAAGAGATTATTTGATGGGATGGGTGAAGAGAAAGAGAGCTGTGGATCTAATGAGGTGACTGTTGCATTTGATAACTATTCAGTAACAACAGAAGAAGAGAACAGTAGCTTCAACTCAGTTGATCAAAGCAGGGTCAAGGCTACAAAAGGTGTATCAAGGCGAAAAACTACGCCGAGTCATGAGTGTGGGAAAGATTACCTCAAGGTAAGCAAGAAGGATTGTTCAAGGGAGGCTGAGAAAGATGCAATCGACAAGTCGAAGAAAACCGGGAGTGTCAAGTGCAAAAACTATTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

397

Amino Acids

44.86

Weight (kDa)

8.65

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 841
AccI GTMKAC 1 cut(s) 318
AciI CCGC 1 cut(s) 796
AclWI GGATC 4 cut(s) 410, 448, 719, 946
AcsI RAATTY 2 cut(s) 143, 496
AcuI CTGAAG 2 cut(s) 162, 354
AflII CTTAAG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 6 cut(s) 482, 488, 720, 827, 1006, 1119
AhdI GACNNNNNGTC 1 cut(s) 387
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 665
Alw21I GWGCWC 3 cut(s) 110, 257, 513
Alw26I GTCTC 1 cut(s) 468
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 4 cut(s) 410, 448, 719, 946
AoxI GGCC 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 208, 344, 536
ApoI RAATTY 2 cut(s) 143, 496
AspLEI GCGC 1 cut(s) 574
AsuC2I CCSGG 1 cut(s) 1162
AsuHPI GGTGA 2 cut(s) 929, 961
BaeGI GKGCMC 1 cut(s) 513
BanII GRGCYC 2 cut(s) 110, 257
BbsI GAAGAC 2 cut(s) 294, 600
Bbv12I GWGCWC 3 cut(s) 110, 257, 513
BbvI GCAGC 3 cut(s) 220, 356, 523
BccI CCATC 6 cut(s) 96, 737, 777, 781, 902, 907
BciT130I CCWGG 1 cut(s) 667
BciVI GTATCC 1 cut(s) 17
BclI TGATCA 2 cut(s) 888, 1015
BcnI CCSGG 1 cut(s) 1162
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 4 cut(s) 198, 384, 567, 776
BfrI CTTAAG 1 cut(s) 587
BfuAI ACCTGC 1 cut(s) 841
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 3 cut(s) 209, 345, 537
BlsI GCNGC 3 cut(s) 210, 346, 538
Bme1390I CCNGG 2 cut(s) 667, 1162
BmeRI GACNNNNNGTC 1 cut(s) 387
BmgBI CACGTC 1 cut(s) 316
BmrFI CCNGG 2 cut(s) 667, 1162
BmrI ACTGGG 1 cut(s) 607
BmsI GCATC 2 cut(s) 630, 1126
BmuI ACTGGG 1 cut(s) 607
BpiI GAAGAC 2 cut(s) 294, 600
Bpu10I CCTNAGC 1 cut(s) 581
BpuEI CTTGAG 2 cut(s) 796, 1079
BpuMI CCSGG 1 cut(s) 1162
BsaJI CCNNGG 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 2 cut(s) 358, 602
Bse3DI GCAATG 2 cut(s) 76, 278
BseBI CCWGG 1 cut(s) 667
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 6 cut(s) 145, 354, 607, 645, 792, 918
BseMI GCAATG 2 cut(s) 76, 278
BseMII CTCAG 6 cut(s) 123, 133, 240, 249, 1023, 1119
BseNI ACTGG 2 cut(s) 358, 602
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 3 cut(s) 220, 356, 523
BshFI GGCC 1 cut(s) 263
BsiHKAI GWGCWC 3 cut(s) 110, 257, 513
BsiSI CCGG 2 cut(s) 547, 1161
BslFI GGGAC 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 3 cut(s) 110, 257, 513
Bsp143I GATC 8 cut(s) 47, 122, 402, 440, 711, 888, 938, 1015
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 1 cut(s) 796
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 6 cut(s) 122, 132, 241, 250, 1022, 1120
BspHI TCATGA 2 cut(s) 61, 1072
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 4 cut(s) 410, 448, 719, 946
BspQI GCTCTTC 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 587
BsrDI GCAATG 2 cut(s) 76, 278
BsrFI RCCGGY 1 cut(s) 546
BsrI ACTGG 2 cut(s) 358, 602
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 8 cut(s) 47, 122, 402, 440, 711, 888, 938, 1015
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 667
Bst4CI ACNGT 3 cut(s) 268, 955, 998
Bst6I CTCTTC 4 cut(s) 330, 890, 915, 984
BstAFI CTTAAG 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 342, 773
BstDEI CTNAG 7 cut(s) 109, 119, 249, 258, 581, 1009, 1128
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 6 cut(s) 145, 354, 607, 645, 792, 918
BstHHI GCGC 1 cut(s) 574
BstKTI GATC 8 cut(s) 50, 125, 405, 443, 714, 891, 941, 1018
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 8 cut(s) 47, 122, 402, 440, 711, 888, 938, 1015
BstMWI GCNNNNNNNGC 1 cut(s) 856
BstNI CCWGG 1 cut(s) 667
BstNSI RCATGY 2 cut(s) 628, 734
BstSCI CCNGG 2 cut(s) 665, 1160
BstSLI GKGCMC 1 cut(s) 513
BstV1I GCAGC 3 cut(s) 220, 356, 523
BstV2I GAAGAC 2 cut(s) 294, 600
BstX2I RGATCY 2 cut(s) 711, 938
BstYI RGATCY 2 cut(s) 711, 938
BsuI GTATCC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 10
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 6 cut(s) 145, 354, 607, 645, 792, 918
BtsIMutI CAGTG 2 cut(s) 159, 264
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 2 cut(s) 342, 773
CciI TCATGA 2 cut(s) 61, 1072
CfoI GCGC 1 cut(s) 574
Cfr10I RCCGGY 1 cut(s) 546
CviAII CATG 5 cut(s) 11, 62, 625, 731, 1073
DdeI CTNAG 7 cut(s) 109, 119, 249, 258, 581, 1009, 1128
DpnI GATC 8 cut(s) 49, 124, 404, 442, 713, 890, 940, 1017
DpnII GATC 8 cut(s) 47, 122, 402, 440, 711, 888, 938, 1015
DriI GACNNNNNGTC 1 cut(s) 387
Eam1104I CTCTTC 4 cut(s) 330, 890, 915, 984
Eam1105I GACNNNNNGTC 1 cut(s) 387
EarI CTCTTC 4 cut(s) 330, 890, 915, 984
Ecl136II GAGCTC 2 cut(s) 108, 255
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 2 cut(s) 110, 257
Eco53kI GAGCTC 2 cut(s) 108, 255
Eco57I CTGAAG 2 cut(s) 162, 354
EcoICRI GAGCTC 2 cut(s) 108, 255
EcoRII CCWGG 1 cut(s) 665
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 2 cut(s) 110, 257
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 5 cut(s) 14, 65, 628, 734, 1076
FaqI GGGAC 1 cut(s) 484
FatI CATG 5 cut(s) 10, 61, 624, 730, 1072
FauI CCCGC 1 cut(s) 803
FbaI TGATCA 2 cut(s) 888, 1015
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 209, 345, 537
FokI GGATG 6 cut(s) 152, 341, 614, 652, 799, 925
FriOI GRGCYC 2 cut(s) 110, 257
Fsp4HI GCNGC 3 cut(s) 209, 345, 537
FspBI CTAG 4 cut(s) 198, 384, 567, 776
GlaI GCGC 1 cut(s) 573
GluI GCNGC 3 cut(s) 209, 345, 537
HaeIII GGCC 1 cut(s) 263
HapII CCGG 2 cut(s) 547, 1161
HhaI GCGC 1 cut(s) 574
Hin1II CATG 5 cut(s) 14, 65, 628, 734, 1076
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HinfI GANTC 6 cut(s) 58, 117, 170, 236, 461, 1069
HpaII CCGG 2 cut(s) 547, 1161
HphI GGTGA 2 cut(s) 929, 961
Hpy166II GTNNAC 3 cut(s) 319, 422, 511
Hpy188I TCNGA 7 cut(s) 122, 259, 334, 381, 412, 445, 742
Hpy188III TCNNGA 5 cut(s) 25, 39, 62, 892, 1073
Hpy8I GTNNAC 3 cut(s) 319, 422, 511
HpyAV CCTTC 1 cut(s) 1102
HpyCH4III ACNGT 3 cut(s) 268, 955, 998
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 8 cut(s) 161, 283, 313, 511, 643, 959, 1139, 1176
HpyF10VI GCNNNNNNNGC 1 cut(s) 856
HpyF3I CTNAG 7 cut(s) 109, 119, 249, 258, 581, 1009, 1128
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 5 cut(s) 14, 65, 628, 734, 1076
HspAI GCGC 1 cut(s) 572
Ksp22I TGATCA 2 cut(s) 888, 1015
Kzo9I GATC 8 cut(s) 47, 122, 402, 440, 711, 888, 938, 1015
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 4 cut(s) 105, 186, 427, 768
Lsp1109I GCAGC 3 cut(s) 220, 356, 523
LweI GCATC 2 cut(s) 630, 1126
MaeI CTAG 4 cut(s) 198, 384, 567, 776
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 3 cut(s) 268, 949, 976
MalI GATC 8 cut(s) 49, 124, 404, 442, 713, 890, 940, 1017
MboI GATC 8 cut(s) 47, 122, 402, 440, 711, 888, 938, 1015
MboII GAAGA 9 cut(s) 111, 299, 347, 605, 907, 932, 998, 1001, 1165
MflI RGATCY 2 cut(s) 711, 938
MhlI GDGCHC 3 cut(s) 110, 257, 513
MluCI AATT 4 cut(s) 143, 214, 496, 861
MlyI GAGTC 4 cut(s) 52, 111, 470, 1078
MseI TTAA 4 cut(s) 54, 147, 293, 588
MslI CAYNNNNRTG 2 cut(s) 130, 1077
MspCI CTTAAG 1 cut(s) 587
MspI CCGG 2 cut(s) 547, 1161
MspR9I CCNGG 2 cut(s) 667, 1162
MvaI CCWGG 1 cut(s) 667
MwoI GCNNNNNNNGC 1 cut(s) 856
NciI CCSGG 1 cut(s) 1162
NcoI CCATGG 1 cut(s) 10
NdeII GATC 8 cut(s) 47, 122, 402, 440, 711, 888, 938, 1015
NlaIII CATG 5 cut(s) 14, 65, 628, 734, 1076
NmeAIII GCCGAG 1 cut(s) 1092
NmuCI GTSAC 1 cut(s) 949
NspI RCATGY 2 cut(s) 628, 734
PagI TCATGA 2 cut(s) 61, 1072
PciI ACATGT 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 170, 236
PkrI GCNGC 3 cut(s) 210, 346, 538
PleI GAGTC 4 cut(s) 52, 111, 469, 1077
PpsI GAGTC 4 cut(s) 52, 111, 469, 1077
PscI ACATGT 1 cut(s) 624
Psp124BI GAGCTC 2 cut(s) 110, 257
Psp6I CCWGG 1 cut(s) 665
PspGI CCWGG 1 cut(s) 665
PsuI RGATCY 2 cut(s) 711, 938
RseI CAYNNNNRTG 2 cut(s) 130, 1077
SacI GAGCTC 2 cut(s) 110, 257
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 4 cut(s) 54, 147, 293, 588
SatI GCNGC 3 cut(s) 209, 345, 537
Sau3AI GATC 8 cut(s) 47, 122, 402, 440, 711, 888, 938, 1015
SchI GAGTC 4 cut(s) 52, 111, 470, 1078
ScrFI CCNGG 2 cut(s) 667, 1162
SduI GDGCHC 3 cut(s) 110, 257, 513
SfaNI GCATC 2 cut(s) 630, 1126
SmiMI CAYNNNNRTG 2 cut(s) 130, 1077
SmlI CTYRAG 3 cut(s) 587, 811, 1094
SmoI CTYRAG 3 cut(s) 587, 811, 1094
Sse9I AATT 4 cut(s) 143, 214, 496, 861
SsiI CCGC 1 cut(s) 796
SspI AATATT 1 cut(s) 844
SspMI CTAG 4 cut(s) 198, 384, 567, 776
SstI GAGCTC 2 cut(s) 110, 257
StyD4I CCNGG 2 cut(s) 665, 1160
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 268, 955, 998
TaiI ACGT 1 cut(s) 318
TaqI TCGA 4 cut(s) 38, 855, 1143, 1151
TasI AATT 4 cut(s) 143, 214, 496, 861
TfiI GAWTC 2 cut(s) 170, 236
Tru1I TTAA 4 cut(s) 54, 147, 293, 588
Tru9I TTAA 4 cut(s) 54, 147, 293, 588
TscAI CASTG 2 cut(s) 159, 271
TseFI GTSAC 1 cut(s) 949
TseI GCWGC 3 cut(s) 208, 344, 536
Tsp45I GTSAC 1 cut(s) 949
TspDTI ATGAA 3 cut(s) 156, 411, 1176
TspGWI ACGGA 2 cut(s) 109, 724
TspRI CASTG 2 cut(s) 159, 271
Vha464I CTTAAG 1 cut(s) 587
VneI GTGCAC 1 cut(s) 509
XapI RAATTY 2 cut(s) 143, 496
XceI RCATGY 2 cut(s) 628, 734
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 4 cut(s) 198, 384, 567, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.