Rroxscaffold_7G00161250

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000358
Physical Location & Seq
Forward (+)
4037329 .. 4038432
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161250.1

Sequence Viewer

Length: 1104 bp
ATGGGAAAAGAATTGGGGAGAATTCCCTTGCTGTGTCACGAAGAACTTGGCCTAATCCTCACCAAGCTCAGCGACGCAGGTGATAGAAAAACCTTCTCCCAGGTCTGCAAGGAATGGTTTCAAGTCGAGGCTCTACACCGATCATCACTTCGTCTTCTCCGACACCAATTTCTCCGTCAGGTACTCCCTAGATTCCCAAATTTACTCACATTCGAAACCTCCGAGCCTGTCACCGACGCTGACGTCGAATTTTTAGCCCAAACATGTCCTCAACTCGAGACCATTGACCTTACTACGTCAGGTCATAAACCCTTCAGTCTCTTGGGGTTTGGTCTAGTGGTGGTAGCAAATAGATGTCCAAAATTATCCAAGGTCTTGCTTAAAAGGAGAAGGTCTATTACTGATCCCGTAATTGTTTCGCTCATAAAGTTAGCACCCAATTTGGCACATTTGGATTTTGGAGGTTGTTATAACATCTCGGATAGAGCCCTCAAAGCAATTGGGTGTTGTGGTTCACTTTGCTATTTAGATTTGGAGTCGTGTGGTTTTACGGATCGTGGATTGGGTTTTCTTGCAAATGGGTCTTCCTCGAAAACGTTAAAGACATTGATACTAGCTTGGTGTAAGGGAATTACTGATGTTGGGGTCTCAAGTTTGCAGAAAATGCAATGCTTGGAGCACCTGAATTTGTCCAACAGTTCGAGGCATAAGATCACGGACATTGGGGGTGTCGCAATCTCGGCCATTAAGACCCTTAAGAAATTGAACTTGGCTGCGCTGGCCAAACTGTCCAACCGCACAGTTGCTGCTCTGGCTCAGAATTGCCCCAACTTGGAGGTGCTTGATATAAGTGAATGTAGGTTGTTAACTGGAGCTGGTATTCGTGCATTTTCTGGTCATGTGTGCTTGGAAACGATTGTTTTGCATCGTCTTCATCAAGTTAGCGCATCTGATTTGGAACACTTGGTGCTGGGATGCCCGTCATTGAAGTCTATACTTCTGCATGGTGAGGAGAGTTTGAGCAAGATATTGCCCCTGATGCGAGAGAGCACTAGAAGACTCGTGAGGATGGGTAGCGCTTTTCCAACCTATTCCTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

367

Amino Acids

40.21

Weight (kDa)

9.09

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 16 - 48 1.5e-07 F-box
DUF7885 PF25372 77 - 298 1.7e-15 Leucine Rich Repeat Domain of unknown function (DUF7885)
LRR_At5g56370 PF24758 247 - 355 7.2e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AarI CACCTGC 1 cut(s) 68
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 246
Acc36I ACCTGC 1 cut(s) 68
AciI CCGC 1 cut(s) 796
AclI AACGTT 1 cut(s) 596
AclWI GGATC 2 cut(s) 398, 561
AcoI YGGCCR 2 cut(s) 741, 780
AcsI RAATTY 4 cut(s) 21, 199, 248, 685
AcuI CTGAAG 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 243
AdeI CACNNNGTG 1 cut(s) 967
AfaI GTAC 1 cut(s) 183
AfeI AGCGCT 1 cut(s) 1078
AfiI CCNNNNNNNGG 1 cut(s) 832
AflII CTTAAG 1 cut(s) 755
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 3 cut(s) 122, 766, 988
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 752, 784
AluBI AGCT 3 cut(s) 67, 617, 875
AluI AGCT 3 cut(s) 67, 617, 875
Alw21I GWGCWC 2 cut(s) 681, 1052
Alw26I GTCTC 3 cut(s) 272, 323, 652
AlwI GGATC 2 cut(s) 398, 561
AlwNI CAGNNNCTG 1 cut(s) 806
Ama87I CYCGRG 1 cut(s) 275
Aor51HI AGCGCT 1 cut(s) 1078
AoxI GGCC 3 cut(s) 49, 741, 780
ApeKI GCWGC 2 cut(s) 773, 806
ApoI RAATTY 4 cut(s) 21, 199, 248, 685
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 3 cut(s) 778, 947, 1079
AsuHPI GGTGA 4 cut(s) 52, 92, 223, 1019
AsuII TTCGAA 1 cut(s) 213
AvaI CYCGRG 1 cut(s) 275
BalI TGGCCA 1 cut(s) 782
BanII GRGCYC 1 cut(s) 490
BarI GAAGNNNNNNTAC 2 cut(s) 382, 414
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 4 cut(s) 146, 576, 923, 1063
Bbv12I GWGCWC 2 cut(s) 681, 1052
BbvI GCAGC 2 cut(s) 760, 793
BccI CCATC 1 cut(s) 1063
BcgI CGANNNNNNTGC 2 cut(s) 904, 938
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 3 cut(s) 272, 323, 652
BfaI CTAG 4 cut(s) 189, 335, 614, 1053
BfoI RGCGCY 1 cut(s) 1080
BfrI CTTAAG 1 cut(s) 755
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 2 cut(s) 774, 807
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 2 cut(s) 775, 808
Bme1390I CCNGG 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 4 cut(s) 934, 956, 965, 1029
BpiI GAAGAC 4 cut(s) 146, 576, 923, 1063
BpmI CTGGAG 1 cut(s) 891
Bpu1102I GCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 634
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 2 cut(s) 272, 652
BsaJI CCNNGG 2 cut(s) 99, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse1I ACTGG 1 cut(s) 874
Bse3DI GCAATG 1 cut(s) 674
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 99, 369
BseGI GGATG 2 cut(s) 980, 1074
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 2 cut(s) 82, 830
BseNI ACTGG 1 cut(s) 874
BseRI GAGGAG 1 cut(s) 1025
BseXI GCAGC 2 cut(s) 760, 793
BseYI CCCAGC 1 cut(s) 970
BshFI GGCC 3 cut(s) 51, 743, 782
BsiHKAI GWGCWC 2 cut(s) 681, 1052
BsiHKCI CYCGRG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 832
BsmAI GTCTC 3 cut(s) 272, 323, 652
BsnI GGCC 3 cut(s) 51, 743, 782
Bso31I GGTCTC 2 cut(s) 272, 652
BsoBI CYCGRG 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 490, 681, 1052
Bsp143I GATC 4 cut(s) 140, 403, 553, 711
Bsp1720I GCTNAGC 1 cut(s) 68
BspACI CCGC 1 cut(s) 796
BspANI GGCC 3 cut(s) 51, 743, 782
BspCNI CTCAG 2 cut(s) 81, 829
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 2 cut(s) 398, 561
BspT104I TTCGAA 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 755
BspTNI GGTCTC 2 cut(s) 272, 652
BsrDI GCAATG 1 cut(s) 674
BsrI ACTGG 1 cut(s) 874
BssECI CCNNGG 2 cut(s) 99, 369
BssMI GATC 4 cut(s) 140, 403, 553, 711
BssNI GRCGYC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 1061
BssT1I CCWWGG 1 cut(s) 369
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 698, 789, 802
BstACI GRCGYC 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 755
BstAPI GCANNNNNTGC 1 cut(s) 664
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 2 cut(s) 68, 816
BstF5I GGATG 2 cut(s) 980, 1074
BstH2I RGCGCY 1 cut(s) 1080
BstHHI GCGC 3 cut(s) 778, 947, 1079
BstKTI GATC 4 cut(s) 143, 406, 556, 714
BstMAI GTCTC 3 cut(s) 272, 323, 652
BstMBI GATC 4 cut(s) 140, 403, 553, 711
BstMWI GCNNNNNNNGC 6 cut(s) 494, 664, 740, 779, 812, 1039
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 760, 793
BstV2I GAAGAC 4 cut(s) 146, 576, 923, 1063
BsuRI GGCC 3 cut(s) 51, 743, 782
BtsCI GGATG 2 cut(s) 980, 1074
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 780
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 3 cut(s) 778, 947, 1079
CseI GACGC 2 cut(s) 83, 245
Csp6I GTAC 1 cut(s) 182
CviAII CATG 3 cut(s) 264, 899, 1004
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 68, 816
DpnI GATC 4 cut(s) 142, 405, 555, 713
DpnII GATC 4 cut(s) 140, 403, 553, 711
DraIII CACNNNGTG 1 cut(s) 967
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
EaeI YGGCCR 2 cut(s) 741, 780
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 490
Eco31I GGTCTC 2 cut(s) 272, 652
Eco47III AGCGCT 1 cut(s) 1078
Eco57I CTGAAG 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 3 cut(s) 267, 902, 1007
FaiI YATR 9 cut(s) 265, 306, 425, 471, 708, 848, 900, 995, 1005
FatI CATG 3 cut(s) 263, 898, 1003
Fnu4HI GCNGC 2 cut(s) 774, 807
FokI GGATG 2 cut(s) 987, 1081
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 2 cut(s) 774, 807
FspBI CTAG 4 cut(s) 189, 335, 614, 1053
GlaI GCGC 3 cut(s) 777, 946, 1078
GluI GCNGC 2 cut(s) 774, 807
GsaI CCCAGC 1 cut(s) 974
GsuI CTGGAG 1 cut(s) 891
HaeII RGCGCY 1 cut(s) 1080
HaeIII GGCC 3 cut(s) 51, 743, 782
HgaI GACGC 2 cut(s) 83, 245
HhaI GCGC 3 cut(s) 778, 947, 1079
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 3 cut(s) 267, 902, 1007
Hin6I GCGC 3 cut(s) 776, 945, 1077
HinP1I GCGC 3 cut(s) 776, 945, 1077
HincII GTYRAC 1 cut(s) 867
HindII GTYRAC 1 cut(s) 867
HinfI GANTC 3 cut(s) 192, 536, 1059
HpaI GTTAAC 1 cut(s) 867
HphI GGTGA 4 cut(s) 52, 92, 223, 1019
Hpy166II GTNNAC 2 cut(s) 515, 867
Hpy188I TCNGA 5 cut(s) 161, 223, 481, 819, 952
Hpy188III TCNNGA 3 cut(s) 38, 277, 1063
Hpy8I GTNNAC 2 cut(s) 515, 867
Hpy99I CGWCG 3 cut(s) 77, 239, 248
HpyAV CCTTC 3 cut(s) 103, 322, 384
HpyCH4III ACNGT 3 cut(s) 698, 789, 802
HpyCH4IV ACGT 3 cut(s) 243, 296, 596
HpyCH4V TGCA 7 cut(s) 108, 575, 658, 667, 887, 925, 1003
HpyF10VI GCNNNNNNNGC 6 cut(s) 494, 664, 740, 779, 812, 1039
HpyF3I CTNAG 2 cut(s) 68, 816
HpySE526I ACGT 3 cut(s) 243, 296, 596
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 3 cut(s) 267, 902, 1007
HspAI GCGC 3 cut(s) 776, 945, 1077
KspAI GTTAAC 1 cut(s) 867
Kzo9I GATC 4 cut(s) 140, 403, 553, 711
LmnI GCTCC 2 cut(s) 676, 872
Lsp1109I GCAGC 2 cut(s) 760, 793
LweI GCATC 4 cut(s) 934, 956, 965, 1029
MaeI CTAG 4 cut(s) 189, 335, 614, 1053
MaeII ACGT 3 cut(s) 243, 296, 596
MaeIII GTNAC 2 cut(s) 35, 229
MalI GATC 4 cut(s) 142, 405, 555, 713
MboI GATC 4 cut(s) 140, 403, 553, 711
MboII GAAGA 5 cut(s) 53, 146, 576, 923, 1068
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 3 cut(s) 490, 681, 1052
MlsI TGGCCA 1 cut(s) 782
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 2 cut(s) 545, 1053
MmeI TCCRAC 3 cut(s) 184, 717, 816
Mox20I TGGCCA 1 cut(s) 782
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 782
MseI TTAA 5 cut(s) 381, 599, 747, 756, 866
Msp20I TGGCCA 1 cut(s) 782
MspCI CTTAAG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 6 cut(s) 494, 664, 740, 779, 812, 1039
NdeII GATC 4 cut(s) 140, 403, 553, 711
NlaIII CATG 3 cut(s) 267, 902, 1007
NmeAIII GCCGAG 1 cut(s) 719
NmuCI GTSAC 2 cut(s) 35, 229
NspI RCATGY 1 cut(s) 267
NspV TTCGAA 1 cut(s) 213
PaeR7I CTCGAG 1 cut(s) 275
PaqCI CACCTGC 1 cut(s) 68
PciI ACATGT 1 cut(s) 263
PcsI WCGNNNNNNNCGW 3 cut(s) 157, 219, 243
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 2 cut(s) 775, 808
PleI GAGTC 2 cut(s) 544, 1053
PpsI GAGTC 2 cut(s) 544, 1053
PscI ACATGT 1 cut(s) 263
PsiI TTATAA 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 596
Psp6I CCWGG 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 970
PspGI CCWGG 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 806
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 5 cut(s) 381, 599, 747, 756, 866
SatI GCNGC 2 cut(s) 774, 807
Sau3AI GATC 4 cut(s) 140, 403, 553, 711
SchI GAGTC 2 cut(s) 545, 1053
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 3 cut(s) 490, 681, 1052
SfaNI GCATC 4 cut(s) 934, 956, 965, 1029
Sfr274I CTCGAG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 213
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 275, 649, 755
SmoI CTYRAG 3 cut(s) 275, 649, 755
SsiI CCGC 1 cut(s) 796
SspMI CTAG 4 cut(s) 189, 335, 614, 1053
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 3 cut(s) 698, 789, 802
TaiI ACGT 3 cut(s) 246, 299, 599
TaqI TCGA 6 cut(s) 126, 213, 246, 276, 590, 701
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 5 cut(s) 381, 599, 747, 756, 866
Tru9I TTAA 5 cut(s) 381, 599, 747, 756, 866
TseFI GTSAC 2 cut(s) 35, 229
TseI GCWGC 2 cut(s) 773, 806
Tsp45I GTSAC 2 cut(s) 35, 229
TspDTI ATGAA 1 cut(s) 923
TspGWI ACGGA 3 cut(s) 164, 566, 731
Vha464I CTTAAG 1 cut(s) 755
XapI RAATTY 4 cut(s) 21, 199, 248, 685
XceI RCATGY 1 cut(s) 267
XhoI CTCGAG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 4 cut(s) 189, 335, 614, 1053
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.