FvH4_6g15310

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000358
Physical Location & Seq
Reverse (-)
9531987 .. 9533051
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15310.t1

Sequence Viewer

Length: 1065 bp
ATGAATGCCCTATGTGACGATGAACTAGCCTTAATTTTGAACTGGATCAAGGACTCAGACGATAGAAAATCAGTCTCTCAGGTCTGCAAGCAATGGTGGCAAGTGGAGAGTCAGAACCGGTCATCAATTCGTGTTCTTGACCTCGATATTCTTCCTGCATTATTACATAGATTTCCAAACTTGGTCACGTTCCAAACACCAAAGTCTATAAGCAACGACAACCTCGAATTATTAGCCCAAGGATGTCCCAAACTAGAGGTCCTCGACCTCACAGCACCGTGTCTTTCACCTGCAACAGTTATGACACAAGGTCTATGCACACTCGCAAATAGGGGTCCCGGATTATCCAAGGTTTCGCTTCGTGGGAGGCGCTTATGGGATGGGCGTGACACAACAACTGCGTCGTTCGAACCTTTCGGGAATAACTTGAAGCATTTGGATTTGGGGAACTGTTTGAATGTTTATGACACAACCCTTTTCAAAGCAATTGGGTCCTCAAGTTGTTCCATTACGGTTTTGAATTTGGAACGCTCTAGAATTACGGATTGTGGATTGGGATTTTTGACAGACGGCTCTTGCTCAAACACCATAAAGGAATTGGTCCTTGAGGGGTGTCGCTATATCAGTGATTCAGGGGTCTCGCTCTTGCGGAAGATGTGTGTCTTGGAAGAGCTAAGTTTGGCTTTTTGTAAACGAGTAACTGACGTTGGAGGTGTTGCGATCTCCGCAATCGGAACCCTCAAGAAATTGAACCTTGTTTCTGGACCTAAAGTGACAGACACCACCATTGTTGCGCTTGCCAAGAATTGCCTCAACTTGGAGACGCTTGAATTGAGGCATAATGAATTCGTGACCGGAGATGGTATCCGTGCATTTTTGGGTCACAAATGCTTGCAAGTGATTGATCTACGAGGTACTCACACATCTGTAGTTGGATGTGATTTGGAAGAGCTAGCGCTTGCATGCCCGTCTTTGAAGTCTATAGTTGTAGCGGAGGGATCAAAAGAGAGGTTGTTCCGTGAAATGCAAGATAGCACTCTTAGCAGATTCATGTGCTTCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

355

Amino Acids

38.83

Weight (kDa)

6.33

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 5 - 41 4.9e-10 F-box
DUF7885 PF25372 141 - 217 7.2e-09 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 222 - 296 7e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
AciI CCGC 3 cut(s) 649, 726, 992
AclWI GGATC 2 cut(s) 53, 1006
AcsI RAATTY 2 cut(s) 520, 845
AfaI GTAC 1 cut(s) 916
AfeI AGCGCT 1 cut(s) 957
AfiI CCNNNNNNNGG 1 cut(s) 817
AgeI ACCGGT 1 cut(s) 117
AgsI TTSAA 8 cut(s) 40, 430, 457, 481, 520, 751, 830, 976
AhdI GACNNNNNGTC 1 cut(s) 309
AluBI AGCT 2 cut(s) 673, 952
AluI AGCT 2 cut(s) 673, 952
Alw26I GTCTC 3 cut(s) 79, 643, 815
AlwI GGATC 2 cut(s) 53, 1006
Aor51HI AGCGCT 1 cut(s) 957
ApoI RAATTY 2 cut(s) 520, 845
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AsiGI ACCGGT 1 cut(s) 117
AspLEI GCGC 3 cut(s) 372, 796, 958
AspS9I GGNCC 5 cut(s) 259, 335, 492, 601, 764
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 279
AsuII TTCGAA 1 cut(s) 408
AsuNHI GCTAGC 1 cut(s) 952
AvaII GGWCC 5 cut(s) 259, 335, 492, 601, 764
BccI CCATC 2 cut(s) 374, 854
BceAI ACGGC 1 cut(s) 586
BciVI GTATCC 1 cut(s) 875
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 79, 643, 815
BfaI CTAG 4 cut(s) 26, 254, 534, 953
BfmI CTRYAG 2 cut(s) 927, 981
BfoI RGCGCY 2 cut(s) 373, 959
BfuAI ACCTGC 1 cut(s) 298
BfuI GTATCC 1 cut(s) 875
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 5 cut(s) 259, 335, 492, 601, 764
BmeRI GACNNNNNGTC 1 cut(s) 309
BmgT120I GGNCC 5 cut(s) 259, 335, 492, 601, 764
BmiI GGNNCC 4 cut(s) 336, 337, 493, 736
BmrFI CCNGG 1 cut(s) 339
BmtI GCTAGC 1 cut(s) 956
Bpu14I TTCGAA 1 cut(s) 408
BpuEI CTTGAG 3 cut(s) 481, 626, 725
BpuMI CCSGG 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 643
BsaJI CCNNGG 2 cut(s) 238, 348
BsaWI WCCGGW 2 cut(s) 117, 854
Bsc4I CCNNNNNNNGG 1 cut(s) 817
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 238, 348
BseGI GGATG 3 cut(s) 248, 385, 941
BseLI CCNNNNNNNGG 1 cut(s) 817
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 2 cut(s) 69, 92
BseNI ACTGG 1 cut(s) 47
BshTI ACCGGT 1 cut(s) 117
BsiSI CCGG 3 cut(s) 118, 339, 855
BslFI GGGAC 2 cut(s) 231, 321
BslI CCNNNNNNNGG 1 cut(s) 817
BsmAI GTCTC 3 cut(s) 79, 643, 815
BsmBI CGTCTC 1 cut(s) 815
BsmFI GGGAC 2 cut(s) 231, 321
BsmI GAATGC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 643
Bsp119I TTCGAA 1 cut(s) 408
Bsp143I GATC 4 cut(s) 45, 720, 904, 998
BspACI CCGC 3 cut(s) 649, 726, 992
BspCNI CTCAG 2 cut(s) 68, 91
BspLI GGNNCC 4 cut(s) 336, 337, 493, 736
BspMI ACCTGC 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 956
BspPI GGATC 2 cut(s) 53, 1006
BspQI GCTCTTC 2 cut(s) 663, 942
BspT104I TTCGAA 1 cut(s) 408
BspTNI GGTCTC 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 238, 348
BssMI GATC 4 cut(s) 45, 720, 904, 998
BssT1I CCWWGG 2 cut(s) 238, 348
Bst4CI ACNGT 4 cut(s) 279, 298, 452, 514
Bst6I CTCTTC 2 cut(s) 663, 942
BstBI TTCGAA 1 cut(s) 408
BstC8I GCNNGC 6 cut(s) 89, 798, 893, 954, 960, 964
BstDEI CTNAG 4 cut(s) 55, 78, 674, 1040
BstF5I GGATG 3 cut(s) 248, 385, 941
BstH2I RGCGCY 2 cut(s) 373, 959
BstHHI GCGC 3 cut(s) 372, 796, 958
BstKTI GATC 4 cut(s) 48, 723, 907, 1001
BstMAI GTCTC 3 cut(s) 79, 643, 815
BstMBI GATC 4 cut(s) 45, 720, 904, 998
BstMWI GCNNNNNNNGC 3 cut(s) 97, 725, 1041
BstNSI RCATGY 1 cut(s) 966
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 2 cut(s) 927, 981
BsuI GTATCC 1 cut(s) 875
BtsCI GGATG 3 cut(s) 248, 385, 941
BtsIMutI CAGTG 1 cut(s) 631
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 6 cut(s) 89, 798, 893, 954, 960, 964
CfoI GCGC 3 cut(s) 372, 796, 958
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 5 cut(s) 259, 335, 492, 601, 764
CseI GACGC 2 cut(s) 390, 832
Csp6I GTAC 1 cut(s) 915
CspAI ACCGGT 1 cut(s) 117
CspCI CAANNNNNGTGG 2 cut(s) 772, 807
CviAII CATG 2 cut(s) 963, 1051
CviJI RGCY 6 cut(s) 29, 236, 573, 673, 683, 952
CviKI_1 RGCY 6 cut(s) 29, 236, 573, 673, 683, 952
CviQI GTAC 1 cut(s) 915
DdeI CTNAG 4 cut(s) 55, 78, 674, 1040
DpnI GATC 4 cut(s) 47, 722, 906, 1000
DpnII GATC 4 cut(s) 45, 720, 904, 998
DriI GACNNNNNGTC 1 cut(s) 309
Eam1104I CTCTTC 2 cut(s) 663, 942
Eam1105I GACNNNNNGTC 1 cut(s) 309
EarI CTCTTC 2 cut(s) 663, 942
Eco130I CCWWGG 2 cut(s) 238, 348
Eco31I GGTCTC 1 cut(s) 643
Eco47I GGWCC 5 cut(s) 259, 335, 492, 601, 764
Eco47III AGCGCT 1 cut(s) 957
EcoO109I RGGNCCY 3 cut(s) 259, 335, 492
EcoRI GAATTC 1 cut(s) 845
EcoT14I CCWWGG 2 cut(s) 238, 348
ErhI CCWWGG 2 cut(s) 238, 348
Esp3I CGTCTC 1 cut(s) 815
FaeI CATG 2 cut(s) 966, 1054
FalI AAGNNNNNCTT 2 cut(s) 667, 699
FaqI GGGAC 2 cut(s) 231, 321
FatI CATG 2 cut(s) 962, 1050
FokI GGATG 3 cut(s) 255, 392, 948
FspBI CTAG 4 cut(s) 26, 254, 534, 953
GlaI GCGC 3 cut(s) 371, 795, 957
HaeII RGCGCY 2 cut(s) 373, 959
HapII CCGG 3 cut(s) 118, 339, 855
HgaI GACGC 2 cut(s) 390, 832
HhaI GCGC 3 cut(s) 372, 796, 958
Hin1II CATG 2 cut(s) 966, 1054
Hin6I GCGC 3 cut(s) 370, 794, 956
HinP1I GCGC 3 cut(s) 370, 794, 956
HinfI GANTC 4 cut(s) 53, 109, 629, 1047
HpaII CCGG 3 cut(s) 118, 339, 855
HphI GGTGA 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 3 cut(s) 58, 114, 734
Hpy188III TCNNGA 6 cut(s) 137, 418, 534, 742, 762, 850
Hpy8I GTNNAC 1 cut(s) 692
Hpy99I CGWCG 1 cut(s) 406
HpyCH4III ACNGT 4 cut(s) 279, 298, 452, 514
HpyCH4IV ACGT 2 cut(s) 188, 705
HpyCH4V TGCA 8 cut(s) 87, 158, 293, 318, 872, 895, 962, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 725, 1041
HpyF3I CTNAG 4 cut(s) 55, 78, 674, 1040
HpySE526I ACGT 2 cut(s) 188, 705
Hsp92II CATG 2 cut(s) 966, 1054
HspAI GCGC 3 cut(s) 370, 794, 956
KflI GGGWCCC 1 cut(s) 335
Kzo9I GATC 4 cut(s) 45, 720, 904, 998
LguI GCTCTTC 2 cut(s) 663, 942
LpnPI CCDG 9 cut(s) 28, 65, 131, 168, 303, 352, 618, 747, 868
MaeI CTAG 4 cut(s) 26, 254, 534, 953
MaeII ACGT 2 cut(s) 188, 705
MaeIII GTNAC 7 cut(s) 14, 184, 386, 697, 772, 850, 881
MalI GATC 4 cut(s) 47, 722, 906, 1000
MboI GATC 4 cut(s) 45, 720, 904, 998
MboII GAAGA 4 cut(s) 143, 664, 680, 959
MfeI CAATTG 1 cut(s) 486
MlyI GAGTC 2 cut(s) 47, 118
MmeI TCCRAC 2 cut(s) 688, 913
MseI TTAA 1 cut(s) 32
MspI CCGG 3 cut(s) 118, 339, 855
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 3 cut(s) 97, 725, 1041
NciI CCSGG 1 cut(s) 339
NdeII GATC 4 cut(s) 45, 720, 904, 998
NheI GCTAGC 1 cut(s) 952
NlaIII CATG 2 cut(s) 966, 1054
NlaIV GGNNCC 4 cut(s) 336, 337, 493, 736
NmuCI GTSAC 6 cut(s) 14, 184, 386, 772, 850, 881
NspI RCATGY 1 cut(s) 966
NspV TTCGAA 1 cut(s) 408
PaeI GCATGC 1 cut(s) 966
PaqCI CACCTGC 1 cut(s) 298
PciSI GCTCTTC 2 cut(s) 663, 942
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 629, 1047
PfoI TCCNGGA 1 cut(s) 337
PinAI ACCGGT 1 cut(s) 117
PleI GAGTC 2 cut(s) 47, 117
PpsI GAGTC 2 cut(s) 47, 117
PpuMI RGGWCCY 3 cut(s) 259, 335, 492
Psp5II RGGWCCY 3 cut(s) 259, 335, 492
PspN4I GGNNCC 4 cut(s) 336, 337, 493, 736
PspPI GGNCC 5 cut(s) 259, 335, 492, 601, 764
PspPPI RGGWCCY 3 cut(s) 259, 335, 492
RsaI GTAC 1 cut(s) 916
RsaNI GTAC 1 cut(s) 915
SapI GCTCTTC 2 cut(s) 663, 942
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 45, 720, 904, 998
Sau96I GGNCC 5 cut(s) 259, 335, 492, 601, 764
SchI GAGTC 2 cut(s) 47, 118
ScrFI CCNGG 1 cut(s) 339
SfcI CTRYAG 2 cut(s) 927, 981
SfuI TTCGAA 1 cut(s) 408
SinI GGWCC 5 cut(s) 259, 335, 492, 601, 764
SmlI CTYRAG 3 cut(s) 496, 605, 740
SmoI CTYRAG 3 cut(s) 496, 605, 740
SphI GCATGC 1 cut(s) 966
SsiI CCGC 3 cut(s) 649, 726, 992
SspMI CTAG 4 cut(s) 26, 254, 534, 953
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 2 cut(s) 238, 348
TaaI ACNGT 4 cut(s) 279, 298, 452, 514
TaiI ACGT 2 cut(s) 191, 708
TaqI TCGA 4 cut(s) 144, 225, 264, 408
TfiI GAWTC 2 cut(s) 629, 1047
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 631
TseFI GTSAC 6 cut(s) 14, 184, 386, 772, 850, 881
Tsp45I GTSAC 6 cut(s) 14, 184, 386, 772, 850, 881
TspDTI ATGAA 4 cut(s) 17, 36, 858, 1039
TspGWI ACGGA 3 cut(s) 557, 857, 1007
TspRI CASTG 1 cut(s) 631
VpaK11BI GGWCC 5 cut(s) 259, 335, 492, 601, 764
XapI RAATTY 2 cut(s) 520, 845
XbaI TCTAGA 1 cut(s) 533
XceI RCATGY 1 cut(s) 966
XcmI CCANNNNNNNNNTGG 1 cut(s) 595
XspI CTAG 4 cut(s) 26, 254, 534, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.