RLG00000024410

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000358
Physical Location & Seq
Forward (+)
35584457 .. 35587489
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024410

Sequence Viewer

Length: 1602 bp
ATGGATGCCCTATGTAACCATGAACTAGACCTAATCTTGAACAGGGTTAAGGACCCAGACGATAGAAAATCATTCTCTCAGGTTAGTAAGCGATTGTGGGCAGTGGAGCGTCTGAACCGATCATCCATTCGCCTTCTCGAACTCATTCGTCTCCCTCGATTACTTGATAGATTTCCAAACTTGGTCACATTCCAAACATCCCTGCCTCTAAGCAACGATGACCTCGAATTATTAGCCCAAAGATGTCCCAAACTAGAGGTCATCGACCTTGGAACACCGGCATTGTCCTTCATAAAAGTTGGGACCCAAGGTCTATGCACACTAGCAAATAGGTGTCCCAAGTTATCCAAGGTTTTGCTTCGTCGGAGGTATATGATGAGTGAGCATGATGGAATTGTGTCGTTCATACCTTTAGCGGATAACTTGAAGCACTTGGATTTGGGATACATTGTGTTGGTTTCTGACAAAACCCTTGAAGCAATTGGGTCCTCAAGTTGTCCGATTACCGTTTTGAACTTGGAAAGCTGTCATATTACGGATTGTGGATTGAGATTTTTGACAAATGGGTCTTGCTCAAAAACCATAAAGGAATTGGTCCTTGCAAGGTGTCAGGGAATCACTGATTCTGGGGTCTCGCTCTTGCAGAAGATGTGTGCCTTGGAGGAGCTAAATTTGGCTCATTGTGACCAAGTCACTGACGTTGGAGGTGTGGCAATCTCCGCAATTCGAACCCTCAAGAAACTGGACTTTGCTAGGGGACCCAGAGTGACAGCTTTGGGACCCAGAGTGACAGACCGCACCATTCTTGCTCTCGCCGAGAATTGCCTCAACTTGGAGATGCTTGATTTGAGTGGTAATAAATTCGTGACCGGAGTTGGTATTCGTGCATTTTTGGGTCACAAGTGCTTACAATCCCTTGATCTACGCTATATTCGGGTTTATGTTAGTGGATCTGATTTGGAAGACCTAGCGCTAGCATGCCCGTCATTGAAGTCTATACTAGTAGAGGGTGGATGGAGAAAAAGATTGAGGGTCATCGACCTTACAACACCGGTGCGGTCCTTTAGTGGAGTTGGGACCCGAGGTCTATGCACACTAGCAAATAAGTGTCCCAGATTTTCCAAGGTTGTGCTTCGTGGGAGATATTATAAGATTGAGGATGATGGAATTGTGTCTTTCATAACTTTAGCGGATAACTTGAAGCATTTGAATTTGGAATTGTGTAAGCTGGTTTCTAATGAAACCCTTAGGGCAATTGGGTCCTCAAGTACGATTAGCGTTTTGAATTTGGCAGGCTGTGTGAATATCACGGATTGTGGATTGAGACTTTTGACAAACGGGTCTTGCTCAAAAACCATAAAGGAATTGGTCCTTAAGGGGTGTCATGGAATCACTGATTCTGGGGTCTCACTCTTGCAGAAGATGTGTGTCTTGGAGGAGCTAAATTTGACTCATTGTCGGCGAGTCACTGAAGTTGGAGGCGTGGCGATCTCCGCAATTCTAACCCTCAAGAAATTGAACTTTGCTTGGGGCCCCAAAGTCACAGACCGCACCATTCTCGCTCTCGCTGAGAATTGCCTCAACTTAATTAGAGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

534

Amino Acids

58.55

Weight (kDa)

8.89

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 107 - 215 1.4e-07 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 229 - 324 8.4e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
DUF7885 PF25372 354 - 529 1.2e-11 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1149
AasI GACNNNNNNGTC 2 cut(s) 565, 1339
AciI CCGC 7 cut(s) 416, 720, 796, 1057, 1190, 1494, 1549
AclWI GGATC 1 cut(s) 958
AcsI RAATTY 5 cut(s) 670, 860, 1210, 1285, 1444
AcuI CTGAAG 1 cut(s) 1491
AfaI GTAC 1 cut(s) 1270
AfeI AGCGCT 1 cut(s) 972
AfiI CCNNNNNNNGG 1 cut(s) 832
AflII CTTAAG 1 cut(s) 1373
AgeI ACCGGT 1 cut(s) 1051
AgsI TTSAA 9 cut(s) 40, 427, 476, 514, 991, 1201, 1210, 1285, 1519
AhdI GACNNNNNGTC 3 cut(s) 309, 1083, 1455
AhlI ACTAGT 1 cut(s) 1000
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
AluBI AGCT 5 cut(s) 525, 667, 773, 1228, 1441
AluI AGCT 5 cut(s) 525, 667, 773, 1228, 1441
Alw26I GTCTC 4 cut(s) 155, 637, 1318, 1411
AlwI GGATC 1 cut(s) 958
Ama87I CYCGRG 1 cut(s) 1080
Aor51HI AGCGCT 1 cut(s) 972
AoxI GGCC 1 cut(s) 1531
ApaI GGGCCC 1 cut(s) 1535
ApoI RAATTY 5 cut(s) 670, 860, 1210, 1285, 1444
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AsiGI ACCGGT 1 cut(s) 1051
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 973
AsuII TTCGAA 1 cut(s) 727
AsuNHI GCTAGC 1 cut(s) 973
AvaI CYCGRG 1 cut(s) 1080
AxyI CCTNAGG 1 cut(s) 1247
BaeGI GKGCMC 1 cut(s) 1535
BanII GRGCYC 1 cut(s) 1535
BbsI GAAGAC 1 cut(s) 969
BccI CCATC 3 cut(s) 383, 1008, 1157
BcgI CGANNNNNNTGC 4 cut(s) 1071, 1105, 1540, 1574
BciVI GTATCC 1 cut(s) 437
BcoDI GTCTC 4 cut(s) 155, 637, 1318, 1411
BcuI ACTAGT 1 cut(s) 1000
BfaI CTAG 8 cut(s) 26, 254, 323, 753, 968, 974, 1001, 1097
BfoI RGCGCY 1 cut(s) 974
BfrI CTTAAG 1 cut(s) 1373
BfuI GTATCC 1 cut(s) 437
BmeRI GACNNNNNGTC 3 cut(s) 309, 1083, 1455
BmeT110I CYCGRG 1 cut(s) 1080
BmsI GCATC 2 cut(s) 828, 1585
BmtI GCTAGC 1 cut(s) 977
BpiI GAAGAC 1 cut(s) 969
Bpu14I TTCGAA 1 cut(s) 727
BpuEI CTTGAG 4 cut(s) 475, 719, 1249, 1493
BsaI GGTCTC 2 cut(s) 637, 1411
BsaJI CCNNGG 6 cut(s) 268, 307, 348, 657, 1081, 1122
BsaWI WCCGGW 2 cut(s) 869, 1051
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse118I RCCGGY 2 cut(s) 277, 1051
Bse1I ACTGG 1 cut(s) 747
Bse21I CCTNAGG 1 cut(s) 1247
BseDI CCNNGG 6 cut(s) 268, 307, 348, 657, 1081, 1122
BseGI GGATG 5 cut(s) 10, 122, 197, 1019, 1165
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMII CTCAG 2 cut(s) 92, 1560
BseNI ACTGG 1 cut(s) 747
BseRI GAGGAG 2 cut(s) 677, 1451
BseSI GKGCMC 1 cut(s) 1535
BshFI GGCC 1 cut(s) 1533
BshTI ACCGGT 1 cut(s) 1051
BsiHKCI CYCGRG 1 cut(s) 1080
BsiSI CCGG 3 cut(s) 278, 870, 1052
BslFI GGGAC 7 cut(s) 231, 316, 321, 771, 792, 1090, 1095
BslI CCNNNNNNNGG 1 cut(s) 832
BsmAI GTCTC 4 cut(s) 155, 637, 1318, 1411
BsmBI CGTCTC 1 cut(s) 155
BsmFI GGGAC 7 cut(s) 231, 316, 321, 771, 792, 1090, 1095
BsnI GGCC 1 cut(s) 1533
Bso31I GGTCTC 2 cut(s) 637, 1411
BsoBI CYCGRG 1 cut(s) 1080
Bsp119I TTCGAA 1 cut(s) 727
Bsp120I GGGCCC 1 cut(s) 1531
Bsp1286I GDGCHC 1 cut(s) 1535
Bsp143I GATC 4 cut(s) 119, 919, 950, 1488
BspACI CCGC 7 cut(s) 416, 720, 796, 1057, 1190, 1494, 1549
BspANI GGCC 1 cut(s) 1533
BspCNI CTCAG 2 cut(s) 91, 1561
BspOI GCTAGC 1 cut(s) 977
BspPI GGATC 1 cut(s) 958
BspT104I TTCGAA 1 cut(s) 727
BspTI CTTAAG 1 cut(s) 1373
BspTNI GGTCTC 2 cut(s) 637, 1411
BsrFI RCCGGY 2 cut(s) 277, 1051
BsrI ACTGG 1 cut(s) 747
BssAI RCCGGY 2 cut(s) 277, 1051
BssECI CCNNGG 6 cut(s) 268, 307, 348, 657, 1081, 1122
BssMI GATC 4 cut(s) 119, 919, 950, 1488
BssT1I CCWWGG 5 cut(s) 268, 307, 348, 657, 1122
Bst4CI ACNGT 1 cut(s) 508
BstAFI CTTAAG 1 cut(s) 1373
BstBI TTCGAA 1 cut(s) 727
BstC8I GCNNGC 3 cut(s) 975, 979, 1294
BstDEI CTNAG 4 cut(s) 78, 209, 1247, 1569
BstF5I GGATG 5 cut(s) 10, 122, 197, 1019, 1165
BstH2I RGCGCY 1 cut(s) 974
BstHHI GCGC 1 cut(s) 973
BstKTI GATC 4 cut(s) 122, 922, 953, 1491
BstMAI GTCTC 4 cut(s) 155, 637, 1318, 1411
BstMBI GATC 4 cut(s) 119, 919, 950, 1488
BstMWI GCNNNNNNNGC 2 cut(s) 719, 1493
BstNSI RCATGY 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 1535
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
Bsu36I CCTNAGG 1 cut(s) 1247
BsuI GTATCC 1 cut(s) 437
BsuRI GGCC 1 cut(s) 1533
BtsCI GGATG 5 cut(s) 10, 122, 197, 1019, 1165
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 5 cut(s) 108, 618, 693, 1392, 1467
Cac8I GCNNGC 3 cut(s) 975, 979, 1294
CfoI GCGC 1 cut(s) 973
Cfr10I RCCGGY 2 cut(s) 277, 1051
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 1269
CspAI ACCGGT 1 cut(s) 1051
CviAII CATG 4 cut(s) 20, 386, 978, 1385
CviJI RGCY 9 cut(s) 236, 525, 667, 677, 773, 1228, 1296, 1441, 1533
CviKI_1 RGCY 9 cut(s) 236, 525, 667, 677, 773, 1228, 1296, 1441, 1533
CviQI GTAC 1 cut(s) 1269
DdeI CTNAG 4 cut(s) 78, 209, 1247, 1569
DpnI GATC 4 cut(s) 121, 921, 952, 1490
DpnII GATC 4 cut(s) 119, 919, 950, 1488
DrdI GACNNNNNNGTC 2 cut(s) 565, 1339
DriI GACNNNNNGTC 3 cut(s) 309, 1083, 1455
DseDI GACNNNNNNGTC 2 cut(s) 565, 1339
Eam1105I GACNNNNNGTC 3 cut(s) 309, 1083, 1455
Eco130I CCWWGG 5 cut(s) 268, 307, 348, 657, 1122
Eco24I GRGCYC 1 cut(s) 1535
Eco31I GGTCTC 2 cut(s) 637, 1411
Eco47III AGCGCT 1 cut(s) 972
Eco57I CTGAAG 1 cut(s) 1491
Eco81I CCTNAGG 1 cut(s) 1247
Eco88I CYCGRG 1 cut(s) 1080
EcoO109I RGGNCCY 9 cut(s) 52, 303, 486, 758, 779, 1077, 1260, 1531, 1532
EcoT14I CCWWGG 5 cut(s) 268, 307, 348, 657, 1122
EcoT38I GRGCYC 1 cut(s) 1535
ErhI CCWWGG 5 cut(s) 268, 307, 348, 657, 1122
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 4 cut(s) 23, 389, 981, 1388
FaqI GGGAC 7 cut(s) 231, 316, 321, 771, 792, 1090, 1095
FatI CATG 4 cut(s) 19, 385, 977, 1384
FokI GGATG 5 cut(s) 17, 109, 184, 1026, 1172
FriOI GRGCYC 1 cut(s) 1535
FspBI CTAG 8 cut(s) 26, 254, 323, 753, 968, 974, 1001, 1097
GlaI GCGC 1 cut(s) 972
HaeII RGCGCY 1 cut(s) 974
HaeIII GGCC 1 cut(s) 1533
HapII CCGG 3 cut(s) 278, 870, 1052
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 973
Hin1II CATG 4 cut(s) 23, 389, 981, 1388
Hin6I GCGC 1 cut(s) 971
HinP1I GCGC 1 cut(s) 971
HinfI GANTC 6 cut(s) 615, 623, 1389, 1397, 1450, 1464
HpaII CCGG 3 cut(s) 278, 870, 1052
Hpy188I TCNGA 5 cut(s) 114, 366, 463, 501, 955
Hpy188III TCNNGA 5 cut(s) 37, 137, 736, 865, 1510
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 2 cut(s) 143, 298
HpyCH4III ACNGT 1 cut(s) 508
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 6 cut(s) 318, 602, 643, 887, 1092, 1417
HpyF10VI GCNNNNNNNGC 2 cut(s) 719, 1493
HpyF3I CTNAG 4 cut(s) 78, 209, 1247, 1569
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 4 cut(s) 23, 389, 981, 1388
HspAI GCGC 1 cut(s) 971
KflI GGGWCCC 4 cut(s) 303, 758, 779, 1077
Kzo9I GATC 4 cut(s) 119, 919, 950, 1488
LmnI GCTCC 3 cut(s) 106, 664, 1438
LweI GCATC 2 cut(s) 828, 1585
MaeI CTAG 8 cut(s) 26, 254, 323, 753, 968, 974, 1001, 1097
MaeII ACGT 1 cut(s) 699
MalI GATC 4 cut(s) 121, 921, 952, 1490
MboI GATC 4 cut(s) 119, 919, 950, 1488
MboII GAAGA 3 cut(s) 658, 974, 1432
MfeI CAATTG 2 cut(s) 480, 1254
MflI RGATCY 1 cut(s) 950
MhlI GDGCHC 1 cut(s) 1535
MlyI GAGTC 2 cut(s) 1444, 1473
MmeI TCCRAC 3 cut(s) 344, 682, 1456
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 4 cut(s) 48, 1374, 1586, 1600
MspCI CTTAAG 1 cut(s) 1373
MspI CCGG 3 cut(s) 278, 870, 1052
MunI CAATTG 2 cut(s) 480, 1254
MwoI GCNNNNNNNGC 2 cut(s) 719, 1493
NdeII GATC 4 cut(s) 119, 919, 950, 1488
NheI GCTAGC 1 cut(s) 973
NlaIII CATG 4 cut(s) 23, 389, 981, 1388
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 9 cut(s) 184, 683, 691, 766, 787, 865, 896, 1465, 1540
NspI RCATGY 1 cut(s) 981
NspV TTCGAA 1 cut(s) 727
PaeI GCATGC 1 cut(s) 981
PcsI WCGNNNNNNNCGW 2 cut(s) 154, 222
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 4 cut(s) 615, 623, 1389, 1397
PflFI GACNNNGTC 1 cut(s) 689
PinAI ACCGGT 1 cut(s) 1051
PleI GAGTC 2 cut(s) 1444, 1472
PpsI GAGTC 2 cut(s) 1444, 1472
PpuMI RGGWCCY 7 cut(s) 52, 303, 486, 758, 779, 1077, 1260
PsiI TTATAA 1 cut(s) 1149
Psp5II RGGWCCY 7 cut(s) 52, 303, 486, 758, 779, 1077, 1260
PspOMI GGGCCC 1 cut(s) 1531
PspPPI RGGWCCY 7 cut(s) 52, 303, 486, 758, 779, 1077, 1260
PsuI RGATCY 1 cut(s) 950
PsyI GACNNNGTC 1 cut(s) 689
RsaI GTAC 1 cut(s) 1270
RsaNI GTAC 1 cut(s) 1269
SaqAI TTAA 4 cut(s) 48, 1374, 1586, 1600
Sau3AI GATC 4 cut(s) 119, 919, 950, 1488
SchI GAGTC 2 cut(s) 1444, 1473
SduI GDGCHC 1 cut(s) 1535
SfaNI GCATC 2 cut(s) 828, 1585
SfuI TTCGAA 1 cut(s) 727
SgrAI CRCCGGYG 1 cut(s) 1051
SmlI CTYRAG 5 cut(s) 490, 734, 1264, 1373, 1508
SmoI CTYRAG 5 cut(s) 490, 734, 1264, 1373, 1508
SpeI ACTAGT 1 cut(s) 1000
SphI GCATGC 1 cut(s) 981
SsiI CCGC 7 cut(s) 416, 720, 796, 1057, 1190, 1494, 1549
SspMI CTAG 8 cut(s) 26, 254, 323, 753, 968, 974, 1001, 1097
StyI CCWWGG 5 cut(s) 268, 307, 348, 657, 1122
TaaI ACNGT 1 cut(s) 508
TaiI ACGT 1 cut(s) 702
TaqI TCGA 6 cut(s) 138, 157, 225, 264, 727, 1038
TfiI GAWTC 4 cut(s) 615, 623, 1389, 1397
Tru1I TTAA 4 cut(s) 48, 1374, 1586, 1600
Tru9I TTAA 4 cut(s) 48, 1374, 1586, 1600
TscAI CASTG 5 cut(s) 108, 625, 700, 1399, 1474
TseFI GTSAC 9 cut(s) 184, 683, 691, 766, 787, 865, 896, 1465, 1540
Tsp45I GTSAC 9 cut(s) 184, 683, 691, 766, 787, 865, 896, 1465, 1540
TspDTI ATGAA 5 cut(s) 36, 280, 394, 1168, 1254
TspGWI ACGGA 2 cut(s) 551, 1325
TspRI CASTG 5 cut(s) 108, 625, 700, 1399, 1474
Tth111I GACNNNGTC 1 cut(s) 689
Vha464I CTTAAG 1 cut(s) 1373
XapI RAATTY 5 cut(s) 670, 860, 1210, 1285, 1444
XceI RCATGY 1 cut(s) 981
XcmI CCANNNNNNNNNTGG 2 cut(s) 589, 1363
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 8 cut(s) 26, 254, 323, 753, 968, 974, 1001, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.