Rh6CG474800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000358
Physical Location & Seq
Reverse (-)
64428530 .. 64429090
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG474800.1

Sequence Viewer

Length: 309 bp
ATGGGTTCCCTCTACTCTGTGACAGACAACACAATTGTTGCTCTTGCTCGGAATTGCCTCAATTTGGAGCTGCTTGAACTGAGAGGTTGTAAGGTGACTGGAGCTGGTATTCGTGCATTTTCGGGTCACAAGTGCTTACAGACCCTTAATCTCTTCTGTTGTGTGTCTGGTATTAGAGGGTCTGATTTAGAACGTTTGGCGCGAAAATGCCCGGCATTGAAGTCTATTGTGGTGGATGAAAGATTGAGGAATAGGATGTGGCGTGTAATGCGAGATGGCACTATTAGCAAATTTCTGGAGTTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

102

Amino Acids

11.43

Weight (kDa)

9.49

Isoelectric Point (pI)

14.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35670
fragaria_vesca FvH4_1g05120 FvH4_1g05120 FvH4_2g32511 FvH4_2g32520 FvH4_2g32530 FvH4_2g32540 FvH4_2g32590 FvH4_2g32600 FvH4_2g32610 FvH4_2g32630 FvH4_2g34980 FvH4_2g34990 FvH4_2g35000 FvH4_2g35530 FvH4_3g30491 FvH4_5g19260 FvH4_5g19260 FvH4_5g33281 FvH4_6g06400 FvH4_6g07350 FvH4_6g07350 FvH4_6g07350 FvH4_6g10172 FvH4_6g10180 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g11570 FvH4_6g15310 FvH4_6g41671 FvH4_6g41680 FvH4_6g41680
malus_domestica MD09G1117800.v1.1 MD15G1093400.v1.1 MD17G1109100.v1.1
prunus_persica Prupe.1G448200_v2.0.a1 Prupe.3G206100_v2.0.a1 Prupe.3G206100_v2.0.a1
pyrus_communis pycom09g04310 pycom17g10160
rosa_chinensis RchiOBHm_Chr2g0157391 RchiOBHm_Chr2g0157401 RchiOBHm_Chr3g0468781 RchiOBHm_Chr6g0306251 RchiOBHm_Chr6g0307021 RchiOBHm_Chr6g0307031
rosa_laevigata RLG00000010745 RLG00000010746 RLG00000010811 RLG00000012028 RLG00000020986 RLG00000024410
rosa_multiflora Rmu_co8477457.1_g000001 Rmu_sc0000126.1_g000004 Rmu_sc0000195.1_g000016 Rmu_sc0001639.1_g000026 Rmu_sc0001639.1_g000027 Rmu_sc0001639.1_g000028 Rmu_sc0005634.1_g000011 Rmu_sc0005634.1_g000012 Rmu_sc0017002.1_g000001 Rmu_sc0022075.1_g000001
rosa_roxburghii Rroxscaffold_2G00092220 Rroxscaffold_2G00092230 Rroxscaffold_6G00412570 Rroxscaffold_6G00412580 Rroxscaffold_7G00161250 Rroxscaffold_7G00161270
rosa_rugosa Rorug02G0460900 Rorug02G0461000 Rorug03G0096400 Rorug03G0096400 Rorug06G0348200 Rorug06G0348400 Rorug06G0355000 Rorug06G0355100
rosa_samantha Rh2AG525300 Rh2AG525400 Rh2BG539400 Rh2CG510000 Rh2DG548500 Rh3AG145800 Rh3DG167000 Rh6BG433900 Rh6BG434000 Rh6BG440200 Rh6BG440600 Rh6CG353800 Rh6CG474800 Rh6CG475100 Rh6CG482000 Rh6CG482100 Rh6DG461100 Rh6DG461300 Rh6DG461400 Rh6DG468300 Rh6DG468400
rosa_wichuraiana Rw2G043480 Rw2G043490 Rw3G013740 Rw6G040150 Rw6G040670 Rw6G040680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 202
AclI AACGTT 1 cut(s) 193
AcsI RAATTY 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 77, 220
AluBI AGCT 2 cut(s) 70, 104
AluI AGCT 2 cut(s) 70, 104
ApeKI GCWGC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 290
AspLEI GCGC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 106
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 212
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 103
BseGI GGATG 2 cut(s) 241, 261
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 241, 261
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 268, 285
BstSCI CCNGG 1 cut(s) 210
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 57
BtsCI GGATG 2 cut(s) 241, 261
CfoI GCGC 1 cut(s) 202
CviJI RGCY 2 cut(s) 70, 104
CviKI_1 RGCY 2 cut(s) 70, 104
DdeI CTNAG 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 2 cut(s) 248, 268
Fsp4HI GCNGC 1 cut(s) 71
GlaI GCGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 120
HapII CCGG 1 cut(s) 212
HhaI GCGC 1 cut(s) 202
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 51, 184
Hpy188III TCNNGA 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 285
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 193
HspAI GCGC 1 cut(s) 200
LmnI GCTCC 2 cut(s) 67, 101
LpnPI CCDG 5 cut(s) 84, 90, 153, 225, 281
Lsp1109I GCAGC 1 cut(s) 57
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 3 cut(s) 19, 94, 125
MboII GAAGA 1 cut(s) 145
MfeI CAATTG 1 cut(s) 33
MluCI AATT 4 cut(s) 33, 52, 61, 290
MnlI CCTC 5 cut(s) 20, 68, 77, 170, 240
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 33
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 268, 285
NciI CCSGG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 3 cut(s) 19, 94, 125
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PkrI GCNGC 1 cut(s) 72
Psp1406I AACGTT 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 212
SetI ASST 5 cut(s) 72, 88, 96, 106, 196
Sse9I AATT 4 cut(s) 33, 52, 61, 290
StyD4I CCNGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 196
TasI AATT 4 cut(s) 33, 52, 61, 290
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseFI GTSAC 3 cut(s) 19, 94, 125
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 3 cut(s) 19, 94, 125
TspDTI ATGAA 2 cut(s) 252, 292
XapI RAATTY 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.